| Clone Name | baal25j24 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK064203.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-E01, full insert sequence Length = 1600 Score = 355 bits (179), Expect = 1e-94 Identities = 389/459 (84%) Strand = Plus / Plus Query: 51 gatgcagctctcttgttgttcttgaaatatacagatgaagaaagatctttgcgaggtgga 110 ||||||||||| || || |||||||||||| | ||||||||||||||||| |||| || Sbjct: 1 gatgcagctcttttattattcttgaaatatgctaatgaagaaagatctttgagaggaggg 60 Query: 111 acaaagttggctgttcatgtcttgcgcatatgccaagcaaatattgaatctaaccttact 170 |||||||||||||||||||||||||| |||||||||| |||||||||||| | || | Sbjct: 61 acaaagttggctgttcatgtcttgcgtctatgccaagccaatattgaatctcatgataat 120 Query: 171 gatcagataaaagtaccaacactctttggtctccttcacctgctcagtagcaaaaaagca 230 |||| ||| || | ||||| || |||| |||||| |||||| | ||||||| || Sbjct: 121 aatcaaatacaattgccaactctagttggcctcctttgcctgcttgctggcaaaaaggcc 180 Query: 231 tacaacaatgtcctccttcgccataatgtgttctgcattttgcaaattgctgctggaagg 290 ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct: 181 tacaacaatgtatatcttcgacataatgtgttctgcatattgcaaattgctgctggaagg 240 Query: 291 cctccaacactgtatggagttccaaagaatgtcgccccatctccactggtccaggagata 350 ||||||||||| |||||||||| ||| |||| | ||| ||| | | |||| ||||||| Sbjct: 241 tctccaacactgcatggagttccgaaggttgtcactccacctcaagttgtcctggagata 300 Query: 351 tccgttgatcagcatactaaagctgattcctcggttcctcaactatcaaggcctcaagaa 410 || ||||||||| ||||||||||||||||| |||||||||| |||||||||||||||| Sbjct: 301 tctagtgatcagcacactaaagctgattcctcagttcctcaacaatcaaggcctcaagaa 360 Query: 411 ccttccactagcactcctagtgtccgtgaggtcttacctgccactgtaccttccaaagat 470 ||||||||||||||||||||||||||||| ||||||||| || ||| ||| | |||||| Sbjct: 361 ccttccactagcactcctagtgtccgtgaagtcttacctacctctggacccttaaaagat 420 Query: 471 gctgataacatatctaactgtagcgagcgaaggaatgtt 509 || ||||| ||||||||||| || ||| ||||||||||| Sbjct: 421 gcggataatatatctaactgcagtgagagaaggaatgtt 459 Score = 79.8 bits (40), Expect = 9e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 465 aaagatgctgataacatatctaactgtagcgagcgaaggaatgttgtcaaaattagggtt 524 |||||||| ||||| ||||||||||| || ||| ||||||||||||||||||| |||||| Sbjct: 535 aaagatgcggataatatatctaactgcagtgagagaaggaatgttgtcaaaataagggtt 594 Query: 525 aggcgtactgcatcatccag 544 | ||| || |||||||||| Sbjct: 595 aaacgtgcttcatcatccag 614 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 465 aaagatgctgataacatatctaactgtagcgagcgaaggaatgtt 509 |||||||| ||||| ||||||||||| || ||| ||||||||||| Sbjct: 475 aaagatgcggataatatatctaactgcagtgagagaaggaatgtt 519
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 202 bits (102), Expect = 9e-49 Identities = 189/218 (86%) Strand = Plus / Plus Query: 292 ctccaacactgtatggagttccaaagaatgtcgccccatctccactggtccaggagatat 351 ||||||||||| |||||||||| ||| |||| | ||| ||| | | |||| |||||||| Sbjct: 14491789 ctccaacactgcatggagttccgaaggttgtcactccacctcaagttgtcctggagatat 14491848 Query: 352 ccgttgatcagcatactaaagctgattcctcggttcctcaactatcaaggcctcaagaac 411 | ||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||| Sbjct: 14491849 ctagtgatcagcacactaaagctgattcctcagttcctcaacaatcaaggcctcaagaac 14491908 Query: 412 cttccactagcactcctagtgtccgtgaggtcttacctgccactgtaccttccaaagatg 471 |||||||||||||||||||||||||||| ||||||||| || ||| ||| | ||||||| Sbjct: 14491909 cttccactagcactcctagtgtccgtgaagtcttacctacctctggacccttaaaagatg 14491968 Query: 472 ctgataacatatctaactgtagcgagcgaaggaatgtt 509 | ||||| ||||||||||| || ||| ||||||||||| Sbjct: 14491969 cggataatatatctaactgcagtgagagaaggaatgtt 14492006 Score = 111 bits (56), Expect = 2e-21 Identities = 149/180 (82%) Strand = Plus / Plus Query: 111 acaaagttggctgttcatgtcttgcgcatatgccaagcaaatattgaatctaaccttact 170 |||||||||||||||||||||||||| |||||||||| |||||||||||| | || | Sbjct: 14490577 acaaagttggctgttcatgtcttgcgtctatgccaagccaatattgaatctcatgataat 14490636 Query: 171 gatcagataaaagtaccaacactctttggtctccttcacctgctcagtagcaaaaaagca 230 |||| ||| || | ||||| || |||| |||||| |||||| | ||||||| || Sbjct: 14490637 aatcaaatacaattgccaactctagttggcctcctttgcctgcttgctggcaaaaaggcc 14490696 Query: 231 tacaacaatgtcctccttcgccataatgtgttctgcattttgcaaattgctgctggaagg 290 ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct: 14490697 tacaacaatgtatatcttcgacataatgtgttctgcatattgcaaattgctgctggaagg 14490756 Score = 105 bits (53), Expect = 1e-19 Identities = 92/105 (87%) Strand = Plus / Plus Query: 3 gaagctagcagggttcttcttgatcttgagcttcaccataaagggctagatgcagctctc 62 |||||| ||||||||||| ||||||| ||| ||||||||||||| || ||||||||||| Sbjct: 14490393 gaagctggcagggttcttattgatctcgagtttcaccataaaggacttgatgcagctctt 14490452 Query: 63 ttgttgttcttgaaatatacagatgaagaaagatctttgcgaggt 107 || || |||||||||||| | ||||||||||||||||| ||||| Sbjct: 14490453 ttattattcttgaaatatgctaatgaagaaagatctttgagaggt 14490497 Score = 79.8 bits (40), Expect = 9e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 465 aaagatgctgataacatatctaactgtagcgagcgaaggaatgttgtcaaaattagggtt 524 |||||||| ||||| ||||||||||| || ||| ||||||||||||||||||| |||||| Sbjct: 14492082 aaagatgcggataatatatctaactgcagtgagagaaggaatgttgtcaaaataagggtt 14492141 Query: 525 aggcgtactgcatcatccag 544 | ||| || |||||||||| Sbjct: 14492142 aaacgtgcttcatcatccag 14492161 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 465 aaagatgctgataacatatctaactgtagcgagcgaaggaatgtt 509 |||||||| ||||| ||||||||||| || ||| ||||||||||| Sbjct: 14492022 aaagatgcggataatatatctaactgcagtgagagaaggaatgtt 14492066
>dbj|AP005683.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1585_D02 Length = 103172 Score = 202 bits (102), Expect = 9e-49 Identities = 189/218 (86%) Strand = Plus / Plus Query: 292 ctccaacactgtatggagttccaaagaatgtcgccccatctccactggtccaggagatat 351 ||||||||||| |||||||||| ||| |||| | ||| ||| | | |||| |||||||| Sbjct: 91354 ctccaacactgcatggagttccgaaggttgtcactccacctcaagttgtcctggagatat 91413 Query: 352 ccgttgatcagcatactaaagctgattcctcggttcctcaactatcaaggcctcaagaac 411 | ||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||| Sbjct: 91414 ctagtgatcagcacactaaagctgattcctcagttcctcaacaatcaaggcctcaagaac 91473 Query: 412 cttccactagcactcctagtgtccgtgaggtcttacctgccactgtaccttccaaagatg 471 |||||||||||||||||||||||||||| ||||||||| || ||| ||| | ||||||| Sbjct: 91474 cttccactagcactcctagtgtccgtgaagtcttacctacctctggacccttaaaagatg 91533 Query: 472 ctgataacatatctaactgtagcgagcgaaggaatgtt 509 | ||||| ||||||||||| || ||| ||||||||||| Sbjct: 91534 cggataatatatctaactgcagtgagagaaggaatgtt 91571 Score = 111 bits (56), Expect = 2e-21 Identities = 149/180 (82%) Strand = Plus / Plus Query: 111 acaaagttggctgttcatgtcttgcgcatatgccaagcaaatattgaatctaaccttact 170 |||||||||||||||||||||||||| |||||||||| |||||||||||| | || | Sbjct: 90142 acaaagttggctgttcatgtcttgcgtctatgccaagccaatattgaatctcatgataat 90201 Query: 171 gatcagataaaagtaccaacactctttggtctccttcacctgctcagtagcaaaaaagca 230 |||| ||| || | ||||| || |||| |||||| |||||| | ||||||| || Sbjct: 90202 aatcaaatacaattgccaactctagttggcctcctttgcctgcttgctggcaaaaaggcc 90261 Query: 231 tacaacaatgtcctccttcgccataatgtgttctgcattttgcaaattgctgctggaagg 290 ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct: 90262 tacaacaatgtatatcttcgacataatgtgttctgcatattgcaaattgctgctggaagg 90321 Score = 105 bits (53), Expect = 1e-19 Identities = 92/105 (87%) Strand = Plus / Plus Query: 3 gaagctagcagggttcttcttgatcttgagcttcaccataaagggctagatgcagctctc 62 |||||| ||||||||||| ||||||| ||| ||||||||||||| || ||||||||||| Sbjct: 89958 gaagctggcagggttcttattgatctcgagtttcaccataaaggacttgatgcagctctt 90017 Query: 63 ttgttgttcttgaaatatacagatgaagaaagatctttgcgaggt 107 || || |||||||||||| | ||||||||||||||||| ||||| Sbjct: 90018 ttattattcttgaaatatgctaatgaagaaagatctttgagaggt 90062 Score = 79.8 bits (40), Expect = 9e-12 Identities = 70/80 (87%) Strand = Plus / Plus Query: 465 aaagatgctgataacatatctaactgtagcgagcgaaggaatgttgtcaaaattagggtt 524 |||||||| ||||| ||||||||||| || ||| ||||||||||||||||||| |||||| Sbjct: 91647 aaagatgcggataatatatctaactgcagtgagagaaggaatgttgtcaaaataagggtt 91706 Query: 525 aggcgtactgcatcatccag 544 | ||| || |||||||||| Sbjct: 91707 aaacgtgcttcatcatccag 91726 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Plus Query: 465 aaagatgctgataacatatctaactgtagcgagcgaaggaatgtt 509 |||||||| ||||| ||||||||||| || ||| ||||||||||| Sbjct: 91587 aaagatgcggataatatatctaactgcagtgagagaaggaatgtt 91631
>gb|AC120496.2| Genomic sequence for Sorghum bicolor, clone SBBBc0267M07, complete sequence Length = 120132 Score = 192 bits (97), Expect = 8e-46 Identities = 166/189 (87%) Strand = Plus / Minus Query: 356 tgatcagcatactaaagctgattcctcggttcctcaactatcaaggcctcaagaaccttc 415 ||||||||| |||||||||||||||||| ||||||| | ||||| |||||| |||||||| Sbjct: 10877 tgatcagcacactaaagctgattcctcgattcctcagccatcaaagcctcaggaaccttc 10818 Query: 416 cactagcactcctagtgtccgtgaggtcttacctgccactgtaccttccaaagatgctga 475 ||||||||||||||||||||| |||||||||||| | ||| |||| | ||||||||||| Sbjct: 10817 cactagcactcctagtgtccgggaggtcttacctacgtctggacctactaaagatgctga 10758 Query: 476 taacatatctaactgtagcgagcgaaggaatgttgtcaaaattagggttaggcgtactgc 535 ||| ||||||||||| ||||| |||||||||| |||||||||||||| | || |||||| Sbjct: 10757 taatatatctaactgcagcgaaagaaggaatgtggtcaaaattagggtgaagcttactgc 10698 Query: 536 atcatccag 544 || ||||| Sbjct: 10697 gtcttccag 10689 Score = 129 bits (65), Expect = 1e-26 Identities = 95/105 (90%) Strand = Plus / Minus Query: 3 gaagctagcagggttcttcttgatcttgagcttcaccataaagggctagatgcagctctc 62 |||||||||||||||||| ||||||||||| | ||||||||||| || ||||||||||| Sbjct: 11938 gaagctagcagggttcttattgatcttgagttacaccataaaggacttgatgcagctctt 11879 Query: 63 ttgttgttcttgaaatatacagatgaagaaagatctttgcgaggt 107 |||||||||||||||||| ||||||||||| |||||||||||| Sbjct: 11878 ttgttgttcttgaaatatgtagatgaagaaaagtctttgcgaggt 11834 Score = 69.9 bits (35), Expect = 8e-09 Identities = 44/47 (93%) Strand = Plus / Minus Query: 110 aacaaagttggctgttcatgtcttgcgcatatgccaagcaaatattg 156 ||||||||||||||||||||||||||| ||||| ||||||| ||||| Sbjct: 11761 aacaaagttggctgttcatgtcttgcgtatatgtcaagcaagtattg 11715
>gb|AY105668.1| Zea mays PCO066968 mRNA sequence Length = 858 Score = 192 bits (97), Expect = 8e-46 Identities = 163/185 (88%) Strand = Plus / Plus Query: 360 cagcatactaaagctgattcctcggttcctcaactatcaaggcctcaagaaccttccact 419 ||||| |||||||||||||||||| ||||||||| ||||| |||||| |||||||||||| Sbjct: 12 cagcacactaaagctgattcctcgattcctcaaccatcaaagcctcaggaaccttccact 71 Query: 420 agcactcctagtgtccgtgaggtcttacctgccactgtaccttccaaagatgctgataac 479 ||||||||||||||||| |||||||||||| || ||| || | |||||||||||||| Sbjct: 72 agcactcctagtgtccgggaggtcttacctacctctggccccactaaagatgctgataat 131 Query: 480 atatctaactgtagcgagcgaaggaatgttgtcaaaattagggttaggcgtactgcatca 539 ||||||||||| ||||| ||||||||||| |||||||||||||| | || |||||| || Sbjct: 132 atatctaactgcagcgaacgaaggaatgtggtcaaaattagggtgaagcttactgcgtct 191 Query: 540 tccag 544 ||||| Sbjct: 192 tccag 196
>emb|CR956360.10| Pig DNA sequence from clone CH242-245E12 on chromosome 7, complete sequence Length = 185507 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Minus Query: 71 cttgaaatatacagatgaagaaagat 96 ||||||||||| |||||||||||||| Sbjct: 5868 cttgaaatatatagatgaagaaagat 5843
>dbj|AP007164.1| Aspergillus oryzae RIB40 genomic DNA, SC111 Length = 2356219 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 335 actggtccaggagatatccgtt 356 |||||||||||||||||||||| Sbjct: 2322466 actggtccaggagatatccgtt 2322445
>ref|XM_474446.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2466 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 2230 cagctttcttgatgttcttgaaatataca 2202
>ref|XM_472502.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2418 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 2182 cagctttcttgatgttcttgaaatataca 2154
>ref|XM_471771.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2577 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 2341 cagctttcttgatgttcttgaaatataca 2313
>gb|AC145365.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0069E11, complete sequence Length = 136959 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 96440 cagctttcttgatgttcttgaaatataca 96468
>gb|AC105767.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1126_B11, complete sequence Length = 103615 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 20061 cagctttcttgatgttcttgaaatataca 20033
>gb|AC136218.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0039A21, complete sequence Length = 139074 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 106134 cagctttcttgatgttcttgaaatataca 106106
>gb|AY811840.1| Schistosoma japonicum SJCHGC03025 protein mRNA, partial cds Length = 460 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 50 agatgcagctctcttgttgttcttg 74 |||||||| |||||||||||||||| Sbjct: 295 agatgcagatctcttgttgttcttg 271
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 1364945 cagctttcttgatgttcttgaaatataca 1364917
>emb|CT009736.8| Mouse DNA sequence from clone RP23-99F22 on chromosome 17, complete sequence Length = 210326 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 gtctccttcacctgctcagta 219 ||||||||||||||||||||| Sbjct: 129252 gtctccttcacctgctcagta 129272
>emb|AL663007.2|OSJN00206 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0054B09, complete sequence Length = 146506 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 10368 cagctttcttgatgttcttgaaatataca 10340
>emb|AL662942.4|OSJN00135 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033H08, complete sequence Length = 141899 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 346 cagctttcttgatgttcttgaaatataca 374
>emb|AL669859.5| Mouse DNA sequence from clone RP23-167D6 on chromosome 11, complete sequence Length = 155196 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 253 ataatgtgttctgcattttgc 273 ||||||||||||||||||||| Sbjct: 44749 ataatgtgttctgcattttgc 44729
>gb|AC161592.2| Mus musculus BAC clone RP24-252H17 from chromosome 13, complete sequence Length = 186026 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 500 aaggaatgttgtcaaaattag 520 ||||||||||||||||||||| Sbjct: 41062 aaggaatgttgtcaaaattag 41042
>gb|AC119747.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1293G11, from chromosome 3, complete sequence Length = 147806 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 26448 cagctttcttgatgttcttgaaatataca 26420
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 35234235 cagctttcttgatgttcttgaaatataca 35234207 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 14172601 cagctttcttgatgttcttgaaatataca 14172573 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 2889143 cagctttcttgatgttcttgaaatataca 2889171
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 18816976 cagctttcttgatgttcttgaaatataca 18816948
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 8417514 cagctttcttgatgttcttgaaatataca 8417542 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 55 cagctctcttgttgttcttgaaatatac 82 ||||| ||||| |||||||||||||||| Sbjct: 25319862 cagctttcttgatgttcttgaaatatac 25319889
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 14638360 cagctttcttgatgttcttgaaatataca 14638332 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 atacaacaatgtcctccttc 249 |||||||||||||||||||| Sbjct: 26111695 atacaacaatgtcctccttc 26111714 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 56 agctctcttgttgttcttgaaatataca 83 |||| ||||| ||||||||||||||||| Sbjct: 23766831 agctttcttgatgttcttgaaatataca 23766858
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 14270986 cagctttcttgatgttcttgaaatataca 14270958
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 19020822 cagctttcttgatgttcttgaaatataca 19020794 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 8229014 cagctttcttgatgttcttgaaatataca 8229042
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 18138879 cagctttcttgatgttcttgaaatataca 18138851
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 1364943 cagctttcttgatgttcttgaaatataca 1364915
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 327736 cagctttcttgatgttcttgaaatataca 327764
>dbj|AP004730.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0009J19 Length = 156988 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 113492 cagctttcttgatgttcttgaaatataca 113464
>dbj|AP004851.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1359_D06 Length = 146805 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 56520 cagctttcttgatgttcttgaaatataca 56548
>dbj|AP005619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0624H09 Length = 158719 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 121377 cagctttcttgatgttcttgaaatataca 121405
>dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0603C10 Length = 187620 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 22519 cagctttcttgatgttcttgaaatataca 22547
>dbj|AP004328.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1616_B03 Length = 96081 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 18306 cagctttcttgatgttcttgaaatataca 18278
>dbj|AP003737.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1051_D12 Length = 144262 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 21297 cagctttcttgatgttcttgaaatataca 21269
>dbj|AP006052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0067K15 Length = 160162 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 155867 cagctttcttgatgttcttgaaatataca 155839
>dbj|AP004695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0474F07 Length = 136440 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 76064 cagctttcttgatgttcttgaaatataca 76036
>gb|AC154342.2| Mus musculus BAC clone RP23-227D10 from 17, complete sequence Length = 199709 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 gtctccttcacctgctcagta 219 ||||||||||||||||||||| Sbjct: 165029 gtctccttcacctgctcagta 165049
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 8488277 cagctttcttgatgttcttgaaatataca 8488305 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 55 cagctctcttgttgttcttgaaatatac 82 ||||| ||||| |||||||||||||||| Sbjct: 25638532 cagctttcttgatgttcttgaaatatac 25638559
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 18743203 cagctttcttgatgttcttgaaatataca 18743175
>emb|AL954153.6|CNS08CCR Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0060B11 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 109192 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 2626 cagctttcttgatgttcttgaaatataca 2654
>emb|AL663004.3|OSJN00207 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0049I21, complete sequence Length = 141935 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 21029 cagctttcttgatgttcttgaaatataca 21057
>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24, complete sequence Length = 173770 Score = 42.1 bits (21), Expect = 1.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 55 cagctctcttgttgttcttgaaatataca 83 ||||| ||||| ||||||||||||||||| Sbjct: 30080 cagctttcttgatgttcttgaaatataca 30052
>emb|AL512346.41| Mouse DNA sequence from clone RP23-322E15 on chromosome X, complete sequence Length = 227395 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 tcttgagcttcaccataaagg 46 ||||||||||||||||||||| Sbjct: 177209 tcttgagcttcaccataaagg 177189
>gb|AC161494.3| Mus musculus chromosome 5, clone RP23-295B4, complete sequence Length = 182261 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 tcaaggcctcaagaaccttc 415 |||||||||||||||||||| Sbjct: 97057 tcaaggcctcaagaaccttc 97038
>ref|XM_416738.1| PREDICTED: Gallus gallus similar to probable dual-specificity Ser/Thr/Tyr kinase (LOC418529), mRNA Length = 2619 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 214 tcagtagcaaaaaagcatacaaca 237 ||||||| |||||||||||||||| Sbjct: 2518 tcagtagaaaaaaagcatacaaca 2495
>gb|AC138109.3| Mus musculus BAC clone RP24-444I15 from chromosome 1, complete sequence Length = 209820 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 aaatatacagatgaagaaag 94 |||||||||||||||||||| Sbjct: 96625 aaatatacagatgaagaaag 96644
>gb|AC129224.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0029P13, complete sequence Length = 158506 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 55 cagctctcttgttgttcttgaaatatac 82 ||||| ||||| |||||||||||||||| Sbjct: 46875 cagctttcttgatgttcttgaaatatac 46902
>gb|AC135114.4| Mus musculus BAC clone RP24-69H7 from chromosome 14, complete sequence Length = 181062 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 cttcttgatcttgagcttca 37 |||||||||||||||||||| Sbjct: 170874 cttcttgatcttgagcttca 170855
>gb|AC122933.4| Mus musculus BAC clone RP23-18P3 from 14, complete sequence Length = 224941 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 cttcttgatcttgagcttca 37 |||||||||||||||||||| Sbjct: 14407 cttcttgatcttgagcttca 14388
>gb|AC129225.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0051D10, complete sequence Length = 140272 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 55 cagctctcttgttgttcttgaaatatac 82 ||||| ||||| |||||||||||||||| Sbjct: 25880 cagctttcttgatgttcttgaaatatac 25853
>gb|AC144710.2| Danio rerio clone CH211-215E4, complete sequence Length = 193226 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 agcaaaaaagcatacaacaa 238 |||||||||||||||||||| Sbjct: 71501 agcaaaaaagcatacaacaa 71520
>ref|XM_779409.1| PREDICTED: Strongylocentrotus purpuratus similar to PDZ domain containing 3 (LOC579286), mRNA Length = 9591 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 19 ttcttgatcttgagcttcaccata 42 ||||||||||| |||||||||||| Sbjct: 9512 ttcttgatctttagcttcaccata 9489
>ref|XM_782029.1| PREDICTED: Strongylocentrotus purpuratus similar to fibrocystin L (LOC582056), mRNA Length = 12390 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 aacactgtatggagttccaa 315 |||||||||||||||||||| Sbjct: 4843 aacactgtatggagttccaa 4862
>emb|BX957344.6| Zebrafish DNA sequence from clone CH211-129N15 in linkage group 19, complete sequence Length = 168128 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 ccgttgatcagcatactaaa 371 |||||||||||||||||||| Sbjct: 81309 ccgttgatcagcatactaaa 81328
>emb|BX537275.8| Zebrafish DNA sequence from clone DKEYP-120E12 in linkage group 11, complete sequence Length = 173631 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 agcaaaaaagcatacaacaa 238 |||||||||||||||||||| Sbjct: 8491 agcaaaaaagcatacaacaa 8510
>emb|CR387497.1| Gallus gallus finished cDNA, clone ChEST142b23 Length = 1609 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 214 tcagtagcaaaaaagcatacaaca 237 ||||||| |||||||||||||||| Sbjct: 1508 tcagtagaaaaaaagcatacaaca 1485
>gb|AF240628.2|AF240628 Homo sapiens chromosome 21 clone B292N6 map 21q21, complete sequence Length = 177273 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 aaatattgaatctaacctta 168 |||||||||||||||||||| Sbjct: 5631 aaatattgaatctaacctta 5612
>emb|BX664738.14| Zebrafish DNA sequence from clone DKEY-240A9 in linkage group 8, complete sequence Length = 180024 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 agcaaaaaagcatacaacaa 238 |||||||||||||||||||| Sbjct: 33783 agcaaaaaagcatacaacaa 33764
>emb|BX537269.8| Zebrafish DNA sequence from clone DKEY-181H1 in linkage group 11, complete sequence Length = 73125 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 agcaaaaaagcatacaacaa 238 |||||||||||||||||||| Sbjct: 32333 agcaaaaaagcatacaacaa 32352
>dbj|AP005391.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0092C08 Length = 131049 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 56 agctctcttgttgttcttgaaatataca 83 |||| ||||| ||||||||||||||||| Sbjct: 56031 agctttcttgatgttcttgaaatataca 56058
>dbj|BS000060.1| Pan troglodytes chromosome 22 clone:RP43-086L15, map 22, complete sequences Length = 159919 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 aaatattgaatctaacctta 168 |||||||||||||||||||| Sbjct: 108775 aaatattgaatctaacctta 108756
>dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1191_A10 Length = 140643 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 atacaacaatgtcctccttc 249 |||||||||||||||||||| Sbjct: 55626 atacaacaatgtcctccttc 55645
>gb|AF111709.1|AF111709 Oryza sativa subsp. indica Retrosat 1 retrotransposon and Ty3-Gypsy type Retrosat 2 retrotransposon, complete sequences; and unknown genes Length = 52684 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 56 agctctcttgttgttcttgaaatataca 83 |||| ||||| ||||||||||||||||| Sbjct: 22722 agctttcttgatgttcttgaaatataca 22695
>dbj|AP001678.1| Homo sapiens genomic DNA, chromosome 21q, section 22/105 Length = 340000 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 aaatattgaatctaacctta 168 |||||||||||||||||||| Sbjct: 230167 aaatattgaatctaacctta 230148
>gb|AC126020.4| Mus musculus BAC clone RP24-364O7 from 8, complete sequence Length = 179287 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 aagaatgtcgccccatctcc 334 |||||||||||||||||||| Sbjct: 94733 aagaatgtcgccccatctcc 94752
>emb|AL806528.14| Mouse DNA sequence from clone RP23-190C17 on chromosome 2, complete sequence Length = 214642 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 ctccttcacctgctcagtag 220 |||||||||||||||||||| Sbjct: 141581 ctccttcacctgctcagtag 141562
>gb|AC164612.4| Mus musculus BAC clone RP23-361B11 from chromosome 9, complete sequence Length = 202803 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 agttggctgttcatgtcttg 134 |||||||||||||||||||| Sbjct: 112956 agttggctgttcatgtcttg 112937
>dbj|AP001254.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B66B12, LL56-APP region, complete sequence Length = 173915 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 aaatattgaatctaacctta 168 |||||||||||||||||||| Sbjct: 52760 aaatattgaatctaacctta 52741 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,150,967 Number of Sequences: 3902068 Number of extensions: 5150967 Number of successful extensions: 103051 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102454 Number of HSP's gapped (non-prelim): 593 length of query: 544 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 521 effective length of database: 17,143,297,704 effective search space: 8931658103784 effective search space used: 8931658103784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)