ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal25j16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF475114.1| Triticum aestivum 60s ribosomal protein L21 mRNA,... 200 7e-49
2gb|AY107603.1| Zea mays PCO098394 mRNA sequence 170 6e-40
3gb|BT016206.1| Zea mays clone Contig39 mRNA sequence 168 2e-39
4gb|AF457939.1| Zea mays clone cho1c.pk003.g2, mRNA sequence 168 2e-39
5ref|NM_196917.1| Oryza sativa (japonica cultivar-group) 60S ribo... 163 1e-37
6gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 geno... 163 1e-37
7dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 163 1e-37
8gb|AF093630.1|AF093630 Oryza sativa 60S ribosomal protein L21 (R... 163 1e-37
9gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 163 1e-37
10gb|AY105020.1| Zea mays PCO098402 mRNA sequence 161 6e-37
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 153 1e-34
12gb|AC137930.3| Oryza sativa (japonica cultivar-group) chromosome... 153 1e-34
13gb|AC137697.2| Genomic sequence for Oryza sativa, Nipponbare str... 153 1e-34
14dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 153 1e-34
15dbj|AK120267.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 1e-34
16ref|NM_100841.2| Arabidopsis thaliana structural constituent of ... 64 1e-07
17gb|AY081656.1| Arabidopsis thaliana similar to ribosomal protein... 64 1e-07
18gb|AY059923.1| Arabidopsis thaliana Similar to ribosomal protein... 64 1e-07
19emb|BX814291.1|CNS0ADUZ Arabidopsis thaliana Full-length cDNA Co... 64 1e-07
20gb|AC000132.1|F21M12 Sequence of BAC F21M12 from Arabidopsis tha... 64 1e-07
21ref|NM_104579.3| Arabidopsis thaliana structural constituent of ... 58 6e-06
22ref|NM_104563.3| Arabidopsis thaliana structural constituent of ... 58 6e-06
23gb|AC079733.1| Arabidopsis thaliana chromosome 1 BAC T8L23 genom... 58 6e-06
24gb|AY091167.1| Arabidopsis thaliana putative 60S ribosomal prote... 58 6e-06
25gb|AY050840.1| Arabidopsis thaliana putative 60S ribosomal prote... 58 6e-06
26gb|AC079732.4|AC079732 Arabidopsis thaliana chromosome 1 BAC F12... 58 6e-06
27gb|BT004794.1| Arabidopsis thaliana At1g57860 gene, complete cds 58 6e-06
28gb|AY086851.1| Arabidopsis thaliana clone 28545 mRNA, complete s... 58 6e-06
29ref|NM_100831.2| Arabidopsis thaliana structural constituent of ... 56 3e-05
30gb|AC003970.1| Arabidopsis thaliana chromosome I BAC F14J9 genom... 56 3e-05
31gb|BT000775.1| Arabidopsis thaliana clone RAFL04-10-C15 (R11681)... 56 3e-05
32gb|AY059119.1| Arabidopsis thaliana putative 60S ribosomal prote... 56 3e-05
33gb|AF370227.1| Arabidopsis thaliana putative 60S ribosomal prote... 56 3e-05
34emb|BX816463.1|CNS0AANS Arabidopsis thaliana Full-length cDNA Co... 56 3e-05
35emb|BX814226.1|CNS0AC0R Arabidopsis thaliana Full-length cDNA Co... 50 0.002
36dbj|AP004496.1| Lotus japonicus genomic DNA, chromosome 1, clone... 48 0.006
37ref|XM_774277.1| Giardia lamblia ATCC 50803 ribosomal protein rp... 40 1.5
38gb|DQ115823.1| Cyanobacteria phage AS-1 contig_16 genomic sequence 40 1.5
39ref|NM_193726.1| Oryza sativa (japonica cultivar-group), predic... 38 5.9
40gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 38 5.9
41gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 38 5.9
42gb|CP000316.1| Polaromonas sp. JS666, complete genome 38 5.9
43gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 38 5.9
44emb|AL162274.17| Human DNA sequence from clone RP11-45A17 on chr... 38 5.9
45dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.9
46dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 38 5.9
47dbj|AP003217.3| Oryza sativa (japonica cultivar-group) genomic D... 38 5.9
48gb|AE004990.1| Halobacterium sp. NRC-1 section 21 of 170 of the ... 38 5.9
49gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 38 5.9
50gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 38 5.9 
>gb|AF475114.1| Triticum aestivum 60s ribosomal protein L21 mRNA, partial cds
          Length = 519

 Score =  200 bits (101), Expect = 7e-49
 Identities = 115/120 (95%)
 Strand = Plus / Plus

                                                                       
Query: 7   ctgcggtcgcggacgcgcgacctgttcgcgcgccccttccggaagaagggttacatcccg 66
           |||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct: 43  ctgcggtcgcggacgcgcgacctgttcgcgcggcccttccgtaagaaggggtacatcccg 102

                                                                       
Query: 67  ctcaccacctacctgcgcacctacaaggtcggngagtacgtcgacgtcaaggtgaacggc 126
           |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 103 ctcaccacctacctgcgcacctacaaggtcggggagcacgtcgacgtcaaggtgaacggc 162
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>gb|AY107603.1| Zea mays PCO098394 mRNA sequence
          Length = 965

 Score =  170 bits (86), Expect = 6e-40
 Identities = 109/117 (93%)
 Strand = Plus / Plus

                                                                       
Query: 10  cggtcgcggacgcgcgacctgttcgcgcgccccttccggaagaagggttacatcccgctc 69
           ||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct: 139 cggtcgcggacccgcgacctgttcgcgcggccgttccgcaagaagggttacatcccgctc 198

                                                                    
Query: 70  accacctacctgcgcacctacaaggtcggngagtacgtcgacgtcaaggtgaacggc 126
           ||||| |||||||||||||||||| |||| || ||||||||||||||||||||||||
Sbjct: 199 accacgtacctgcgcacctacaagatcggcgactacgtcgacgtcaaggtgaacggc 255
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>gb|BT016206.1| Zea mays clone Contig39 mRNA sequence
          Length = 748

 Score =  168 bits (85), Expect = 2e-39
 Identities = 111/120 (92%)
 Strand = Plus / Plus

                                                                       
Query: 7   ctgcggtcgcggacgcgcgacctgttcgcgcgccccttccggaagaagggttacatcccg 66
           |||||||||||||| ||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct: 82  ctgcggtcgcggacccgcgacctgttcgcgcggcccttccgcaagaaggggtacatcccg 141

                                                                       
Query: 67  ctcaccacctacctgcgcacctacaaggtcggngagtacgtcgacgtcaaggtgaacggc 126
           |||||||| |||||||||||||||||| |||| || ||||||||||||||||| ||||||
Sbjct: 142 ctcaccacgtacctgcgcacctacaagatcggcgactacgtcgacgtcaaggttaacggc 201
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>gb|AF457939.1| Zea mays clone cho1c.pk003.g2, mRNA sequence
          Length = 526

 Score =  168 bits (85), Expect = 2e-39
 Identities = 111/120 (92%)
 Strand = Plus / Plus

                                                                       
Query: 7   ctgcggtcgcggacgcgcgacctgttcgcgcgccccttccggaagaagggttacatcccg 66
           ||||| ||||||||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 56  ctgcgctcgcggacgcgcgacctcttcgcgcgccccttccgcaagaagggctacatcccg 115

                                                                       
Query: 67  ctcaccacctacctgcgcacctacaaggtcggngagtacgtcgacgtcaaggtgaacggc 126
           |||||||||||||| |||||||||||| |||| || |||||||| |||||||||||||||
Sbjct: 116 ctcaccacctacctccgcacctacaagatcggcgattacgtcgatgtcaaggtgaacggc 175
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>ref|NM_196917.1| Oryza sativa (japonica cultivar-group) 60S ribosomal protein L21
           (OSJNBa0006L06.3), mRNA
          Length = 783

 Score =  163 bits (82), Expect = 1e-37
 Identities = 105/113 (92%)
 Strand = Plus / Plus

                                                                       
Query: 14  cgcggacgcgcgacctgttcgcgcgccccttccggaagaagggttacatcccgctcacca 73
           ||||||||||||||||||||||||| || ||| |||||||||| ||||||||||||||||
Sbjct: 103 cgcggacgcgcgacctgttcgcgcggccgttcaggaagaaggggtacatcccgctcacca 162

                                                                
Query: 74  cctacctgcgcacctacaaggtcggngagtacgtcgacgtcaaggtgaacggc 126
           ||||||| |||||||||||| |||| ||| |||||||||||||||||||||||
Sbjct: 163 cctacctccgcacctacaagatcggcgagcacgtcgacgtcaaggtgaacggc 215
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>gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 genomic sequence, complete
             sequence
          Length = 162339

 Score =  163 bits (82), Expect = 1e-37
 Identities = 105/113 (92%)
 Strand = Plus / Minus

                                                                         
Query: 14    cgcggacgcgcgacctgttcgcgcgccccttccggaagaagggttacatcccgctcacca 73
             ||||||||||||||||||||||||| || ||| |||||||||| ||||||||||||||||
Sbjct: 15286 cgcggacgcgcgacctgttcgcgcggccgttcaggaagaaggggtacatcccgctcacca 15227

                                                                  
Query: 74    cctacctgcgcacctacaaggtcggngagtacgtcgacgtcaaggtgaacggc 126
             ||||||| |||||||||||| |||| ||| |||||||||||||||||||||||
Sbjct: 15226 cctacctccgcacctacaagatcggcgagcacgtcgacgtcaaggtgaacggc 15174
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  163 bits (82), Expect = 1e-37
 Identities = 105/113 (92%)
 Strand = Plus / Minus

                                                                            
Query: 14       cgcggacgcgcgacctgttcgcgcgccccttccggaagaagggttacatcccgctcacca 73
                ||||||||||||||||||||||||| || ||| |||||||||| ||||||||||||||||
Sbjct: 16670769 cgcggacgcgcgacctgttcgcgcggccgttcaggaagaaggggtacatcccgctcacca 16670710

                                                                     
Query: 74       cctacctgcgcacctacaaggtcggngagtacgtcgacgtcaaggtgaacggc 126
                ||||||| |||||||||||| |||| ||| |||||||||||||||||||||||
Sbjct: 16670709 cctacctccgcacctacaagatcggcgagcacgtcgacgtcaaggtgaacggc 16670657
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>gb|AF093630.1|AF093630 Oryza sativa 60S ribosomal protein L21 (RPL21) mRNA, complete cds
          Length = 753

 Score =  163 bits (82), Expect = 1e-37
 Identities = 105/113 (92%)
 Strand = Plus / Plus

                                                                       
Query: 14  cgcggacgcgcgacctgttcgcgcgccccttccggaagaagggttacatcccgctcacca 73
           ||||||||||||||||||||||||| || ||| |||||||||| ||||||||||||||||
Sbjct: 42  cgcggacgcgcgacctgttcgcgcggccgttcaggaagaaggggtacatcccgctcacca 101

                                                                
Query: 74  cctacctgcgcacctacaaggtcggngagtacgtcgacgtcaaggtgaacggc 126
           ||||||| |||||||||||| |||| ||| |||||||||||||||||||||||
Sbjct: 102 cctacctccgcacctacaagatcggcgagcacgtcgacgtcaaggtgaacggc 154
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  163 bits (82), Expect = 1e-37
 Identities = 105/113 (92%)
 Strand = Plus / Minus

                                                                            
Query: 14       cgcggacgcgcgacctgttcgcgcgccccttccggaagaagggttacatcccgctcacca 73
                ||||||||||||||||||||||||| || ||| |||||||||| ||||||||||||||||
Sbjct: 16679809 cgcggacgcgcgacctgttcgcgcggccgttcaggaagaaggggtacatcccgctcacca 16679750

                                                                     
Query: 74       cctacctgcgcacctacaaggtcggngagtacgtcgacgtcaaggtgaacggc 126
                ||||||| |||||||||||| |||| ||| |||||||||||||||||||||||
Sbjct: 16679749 cctacctccgcacctacaagatcggcgagcacgtcgacgtcaaggtgaacggc 16679697
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>gb|AY105020.1| Zea mays PCO098402 mRNA sequence
          Length = 784

 Score =  161 bits (81), Expect = 6e-37
 Identities = 110/120 (91%)
 Strand = Plus / Plus

                                                                       
Query: 7   ctgcggtcgcggacgcgcgacctgttcgcgcgccccttccggaagaagggttacatcccg 66
           |||||||||||||| ||||||||||||||||| |||||||| |||||||| |||||||| 
Sbjct: 118 ctgcggtcgcggacccgcgacctgttcgcgcggcccttccgcaagaaggggtacatccca 177

                                                                       
Query: 67  ctcaccacctacctgcgcacctacaaggtcggngagtacgtcgacgtcaaggtgaacggc 126
           |||||||| |||||||||||||||||| |||| || ||||||||||||||||| ||||||
Sbjct: 178 ctcaccacgtacctgcgcacctacaagatcggcgactacgtcgacgtcaaggttaacggc 237
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  153 bits (77), Expect = 1e-34
 Identities = 109/120 (90%)
 Strand = Plus / Plus

                                                                           
Query: 7       ctgcggtcgcggacgcgcgacctgttcgcgcgccccttccggaagaagggttacatcccg 66
               |||||| |||||||||||||||| |||||||| || ||||| ||||||||||||||||||
Sbjct: 2246797 ctgcgggcgcggacgcgcgacctcttcgcgcggccgttccgcaagaagggttacatcccg 2246856

                                                                           
Query: 67      ctcaccacctacctgcgcacctacaaggtcggngagtacgtcgacgtcaaggtgaacggc 126
               ||||||||||||||| | || |||||| |||| || ||||||||||||||||||||||||
Sbjct: 2246857 ctcaccacctacctgaggacgtacaagatcggcgattacgtcgacgtcaaggtgaacggc 2246916
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>gb|AC137930.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0030C11,
              complete sequence
          Length = 156647

 Score =  153 bits (77), Expect = 1e-34
 Identities = 109/120 (90%)
 Strand = Plus / Plus

                                                                          
Query: 7      ctgcggtcgcggacgcgcgacctgttcgcgcgccccttccggaagaagggttacatcccg 66
              |||||| |||||||||||||||| |||||||| || ||||| ||||||||||||||||||
Sbjct: 137091 ctgcgggcgcggacgcgcgacctcttcgcgcggccgttccgcaagaagggttacatcccg 137150

                                                                          
Query: 67     ctcaccacctacctgcgcacctacaaggtcggngagtacgtcgacgtcaaggtgaacggc 126
              ||||||||||||||| | || |||||| |||| || ||||||||||||||||||||||||
Sbjct: 137151 ctcaccacctacctgaggacgtacaagatcggcgattacgtcgacgtcaaggtgaacggc 137210
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>gb|AC137697.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0081A17, from chromosome 3, complete sequence
          Length = 134821

 Score =  153 bits (77), Expect = 1e-34
 Identities = 109/120 (90%)
 Strand = Plus / Minus

                                                                         
Query: 7     ctgcggtcgcggacgcgcgacctgttcgcgcgccccttccggaagaagggttacatcccg 66
             |||||| |||||||||||||||| |||||||| || ||||| ||||||||||||||||||
Sbjct: 79259 ctgcgggcgcggacgcgcgacctcttcgcgcggccgttccgcaagaagggttacatcccg 79200

                                                                         
Query: 67    ctcaccacctacctgcgcacctacaaggtcggngagtacgtcgacgtcaaggtgaacggc 126
             ||||||||||||||| | || |||||| |||| || ||||||||||||||||||||||||
Sbjct: 79199 ctcaccacctacctgaggacgtacaagatcggcgattacgtcgacgtcaaggtgaacggc 79140
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  153 bits (77), Expect = 1e-34
 Identities = 109/120 (90%)
 Strand = Plus / Plus

                                                                           
Query: 7       ctgcggtcgcggacgcgcgacctgttcgcgcgccccttccggaagaagggttacatcccg 66
               |||||| |||||||||||||||| |||||||| || ||||| ||||||||||||||||||
Sbjct: 2246809 ctgcgggcgcggacgcgcgacctcttcgcgcggccgttccgcaagaagggttacatcccg 2246868

                                                                           
Query: 67      ctcaccacctacctgcgcacctacaaggtcggngagtacgtcgacgtcaaggtgaacggc 126
               ||||||||||||||| | || |||||| |||| || ||||||||||||||||||||||||
Sbjct: 2246869 ctcaccacctacctgaggacgtacaagatcggcgattacgtcgacgtcaaggtgaacggc 2246928
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>dbj|AK120267.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047I10, full
           insert sequence
          Length = 2007

 Score =  153 bits (77), Expect = 1e-34
 Identities = 109/120 (90%)
 Strand = Plus / Plus

                                                                       
Query: 7   ctgcggtcgcggacgcgcgacctgttcgcgcgccccttccggaagaagggttacatcccg 66
           |||||| |||||||||||||||| |||||||| || ||||| ||||||||||||||||||
Sbjct: 99  ctgcgggcgcggacgcgcgacctcttcgcgcggccgttccgcaagaagggttacatcccg 158

                                                                       
Query: 67  ctcaccacctacctgcgcacctacaaggtcggngagtacgtcgacgtcaaggtgaacggc 126
           ||||||||||||||| | || |||||| |||| || ||||||||||||||||||||||||
Sbjct: 159 ctcaccacctacctgaggacgtacaagatcggcgattacgtcgacgtcaaggtgaacggc 218
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>ref|NM_100841.2| Arabidopsis thaliana structural constituent of ribosome AT1G09690
           mRNA, complete cds
          Length = 755

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 79/95 (83%)
 Strand = Plus / Plus

                                                                       
Query: 28  ctgttcgcgcgccccttccggaagaagggttacatcccgctcaccacctacctgcgcacc 87
           ||||||||| | || ||| |||||||||||||||| || ||| | || |||||| | |||
Sbjct: 81  ctgttcgcgaggccattcaggaagaagggttacattccactctcgacttacctgagaacc 140

                                              
Query: 88  tacaaggtcggngagtacgtcgacgtcaaggtgaa 122
           | ||||||||| || |||||||| || ||||||||
Sbjct: 141 ttcaaggtcggcgattacgtcgatgtgaaggtgaa 175
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>gb|AY081656.1| Arabidopsis thaliana similar to ribosomal protein L21 (At1g09690)
           mRNA, complete cds
          Length = 538

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 79/95 (83%)
 Strand = Plus / Plus

                                                                       
Query: 28  ctgttcgcgcgccccttccggaagaagggttacatcccgctcaccacctacctgcgcacc 87
           ||||||||| | || ||| |||||||||||||||| || ||| | || |||||| | |||
Sbjct: 40  ctgttcgcgaggccattcaggaagaagggttacattccactctcgacttacctgagaacc 99

                                              
Query: 88  tacaaggtcggngagtacgtcgacgtcaaggtgaa 122
           | ||||||||| || |||||||| || ||||||||
Sbjct: 100 ttcaaggtcggcgattacgtcgatgtgaaggtgaa 134
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>gb|AY059923.1| Arabidopsis thaliana Similar to ribosomal protein L21 (At1g09690;
           F21M12.8) mRNA, complete cds
          Length = 665

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 79/95 (83%)
 Strand = Plus / Plus

                                                                       
Query: 28  ctgttcgcgcgccccttccggaagaagggttacatcccgctcaccacctacctgcgcacc 87
           ||||||||| | || ||| |||||||||||||||| || ||| | || |||||| | |||
Sbjct: 81  ctgttcgcgaggccattcaggaagaagggttacattccactctcgacttacctgagaacc 140

                                              
Query: 88  tacaaggtcggngagtacgtcgacgtcaaggtgaa 122
           | ||||||||| || |||||||| || ||||||||
Sbjct: 141 ttcaaggtcggcgattacgtcgatgtgaaggtgaa 175
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>emb|BX814291.1|CNS0ADUZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB66ZE01 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 660

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 79/95 (83%)
 Strand = Plus / Plus

                                                                       
Query: 28  ctgttcgcgcgccccttccggaagaagggttacatcccgctcaccacctacctgcgcacc 87
           ||||||||| | || ||| |||||||||||||||| || ||| | || |||||| | |||
Sbjct: 68  ctgttcgcgaggccattcaggaagaagggttacattccactctcgacttacctgagaacc 127

                                              
Query: 88  tacaaggtcggngagtacgtcgacgtcaaggtgaa 122
           | ||||||||| || |||||||| || ||||||||
Sbjct: 128 ttcaaggtcggcgattacgtcgatgtgaaggtgaa 162
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>gb|AC000132.1|F21M12 Sequence of BAC F21M12 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 146505

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                         
Query: 28    ctgttcgcgcgccccttccggaagaagggttacatcccgctcaccacctacctgcgcacc 87
             ||||||||| | || ||| |||||||||||||||| || ||| | || |||||| | |||
Sbjct: 24277 ctgttcgcgaggccattcaggaagaagggttacattccactctcgacttacctgagaacc 24218

                                                
Query: 88    tacaaggtcggngagtacgtcgacgtcaaggtgaa 122
             | ||||||||| || |||||||| || ||||||||
Sbjct: 24217 ttcaaggtcggcgattacgtcgatgtgaaggtgaa 24183
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>ref|NM_104579.3| Arabidopsis thaliana structural constituent of ribosome AT1G57860
           mRNA, complete cds
          Length = 669

 Score = 58.0 bits (29), Expect = 6e-06
 Identities = 76/92 (82%)
 Strand = Plus / Plus

                                                                       
Query: 28  ctgttcgcgcgccccttccggaagaagggttacatcccgctcaccacctacctgcgcacc 87
           ||||||||| | || ||| ||||||||||||| || || ||| |||| |||||  | |||
Sbjct: 78  ctgttcgcgagaccattcaggaagaagggttatattccactctccacttacctcagaacc 137

                                           
Query: 88  tacaaggtcggngagtacgtcgacgtcaaggt 119
           | ||||||||| || |||||||| ||||||||
Sbjct: 138 ttcaaggtcggcgattacgtcgatgtcaaggt 169
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>ref|NM_104563.3| Arabidopsis thaliana structural constituent of ribosome AT1G57660
           mRNA, complete cds
          Length = 715

 Score = 58.0 bits (29), Expect = 6e-06
 Identities = 76/92 (82%)
 Strand = Plus / Plus

                                                                       
Query: 28  ctgttcgcgcgccccttccggaagaagggttacatcccgctcaccacctacctgcgcacc 87
           ||||||||| | || ||| ||||||||||||| || || ||| |||| |||||  | |||
Sbjct: 87  ctgttcgcgagaccattcaggaagaagggttatattccactctccacttacctcagaacc 146

                                           
Query: 88  tacaaggtcggngagtacgtcgacgtcaaggt 119
           | ||||||||| || |||||||| ||||||||
Sbjct: 147 ttcaaggtcggcgattacgtcgatgtcaaggt 178
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>gb|AC079733.1| Arabidopsis thaliana chromosome 1 BAC T8L23 genomic sequence, complete
             sequence
          Length = 90448

 Score = 58.0 bits (29), Expect = 6e-06
 Identities = 76/92 (82%)
 Strand = Plus / Plus

                                                                         
Query: 28    ctgttcgcgcgccccttccggaagaagggttacatcccgctcaccacctacctgcgcacc 87
             ||||||||| | || ||| ||||||||||||| || || ||| |||| |||||  | |||
Sbjct: 46249 ctgttcgcgagaccattcaggaagaagggttatattccactctccacttacctcagaacc 46308

                                             
Query: 88    tacaaggtcggngagtacgtcgacgtcaaggt 119
             | ||||||||| || |||||||| ||||||||
Sbjct: 46309 ttcaaggtcggcgattacgtcgatgtcaaggt 46340
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>gb|AY091167.1| Arabidopsis thaliana putative 60S ribosomal protein L21 (At1g57660)
           mRNA, complete cds
          Length = 526

 Score = 58.0 bits (29), Expect = 6e-06
 Identities = 76/92 (82%)
 Strand = Plus / Plus

                                                                       
Query: 28  ctgttcgcgcgccccttccggaagaagggttacatcccgctcaccacctacctgcgcacc 87
           ||||||||| | || ||| ||||||||||||| || || ||| |||| |||||  | |||
Sbjct: 40  ctgttcgcgagaccattcaggaagaagggttatattccactctccacttacctcagaacc 99

                                           
Query: 88  tacaaggtcggngagtacgtcgacgtcaaggt 119
           | ||||||||| || |||||||| ||||||||
Sbjct: 100 ttcaaggtcggcgattacgtcgatgtcaaggt 131
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>gb|AY050840.1| Arabidopsis thaliana putative 60S ribosomal protein L21 (At1g57660)
           mRNA, complete cds
          Length = 681

 Score = 58.0 bits (29), Expect = 6e-06
 Identities = 76/92 (82%)
 Strand = Plus / Plus

                                                                       
Query: 28  ctgttcgcgcgccccttccggaagaagggttacatcccgctcaccacctacctgcgcacc 87
           ||||||||| | || ||| ||||||||||||| || || ||| |||| |||||  | |||
Sbjct: 87  ctgttcgcgagaccattcaggaagaagggttatattccactctccacttacctcagaacc 146

                                           
Query: 88  tacaaggtcggngagtacgtcgacgtcaaggt 119
           | ||||||||| || |||||||| ||||||||
Sbjct: 147 ttcaaggtcggcgattacgtcgatgtcaaggt 178
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>gb|AC079732.4|AC079732 Arabidopsis thaliana chromosome 1 BAC F12K22 genomic sequence,
            complete sequence
          Length = 43985

 Score = 58.0 bits (29), Expect = 6e-06
 Identities = 76/92 (82%)
 Strand = Plus / Plus

                                                                        
Query: 28   ctgttcgcgcgccccttccggaagaagggttacatcccgctcaccacctacctgcgcacc 87
            ||||||||| | || ||| ||||||||||||| || || ||| |||| |||||  | |||
Sbjct: 5573 ctgttcgcgagaccattcaggaagaagggttatattccactctccacttacctcagaacc 5632

                                            
Query: 88   tacaaggtcggngagtacgtcgacgtcaaggt 119
            | ||||||||| || |||||||| ||||||||
Sbjct: 5633 ttcaaggtcggcgattacgtcgatgtcaaggt 5664
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>gb|BT004794.1| Arabidopsis thaliana At1g57860 gene, complete cds
          Length = 495

 Score = 58.0 bits (29), Expect = 6e-06
 Identities = 76/92 (82%)
 Strand = Plus / Plus

                                                                       
Query: 28  ctgttcgcgcgccccttccggaagaagggttacatcccgctcaccacctacctgcgcacc 87
           ||||||||| | || ||| ||||||||||||| || || ||| |||| |||||  | |||
Sbjct: 40  ctgttcgcgagaccattcaggaagaagggttatattccactctccacttacctcagaacc 99

                                           
Query: 88  tacaaggtcggngagtacgtcgacgtcaaggt 119
           | ||||||||| || |||||||| ||||||||
Sbjct: 100 ttcaaggtcggcgattacgtcgatgtcaaggt 131
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>gb|AY086851.1| Arabidopsis thaliana clone 28545 mRNA, complete sequence
          Length = 627

 Score = 58.0 bits (29), Expect = 6e-06
 Identities = 76/92 (82%)
 Strand = Plus / Plus

                                                                       
Query: 28  ctgttcgcgcgccccttccggaagaagggttacatcccgctcaccacctacctgcgcacc 87
           ||||||||| | || ||| ||||||||||||| || || ||| |||| |||||  | |||
Sbjct: 84  ctgttcgcgagaccattcaggaagaagggttatattccactctccacttacctcagaacc 143

                                           
Query: 88  tacaaggtcggngagtacgtcgacgtcaaggt 119
           | ||||||||| || |||||||| ||||||||
Sbjct: 144 ttcaaggtcggcgattacgtcgatgtcaaggt 175
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>ref|NM_100831.2| Arabidopsis thaliana structural constituent of ribosome AT1G09590
           mRNA, complete cds
          Length = 675

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                       
Query: 28  ctgttcgcgcgccccttccggaagaagggttacatcccgctcaccacctacctgcgcacc 87
           ||||||||| | || ||| |||||||||||||||| || ||  | || |||||| | |||
Sbjct: 54  ctgttcgcgaggcctttcaggaagaagggttacattcctctatcgacttacctgaggacc 113

                                              
Query: 88  tacaaggtcggngagtacgtcgacgtcaaggtgaa 122
           | ||||||||| || |||||||| || ||||||||
Sbjct: 114 ttcaaggtcggcgattacgtcgatgtgaaggtgaa 148
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>gb|AC003970.1| Arabidopsis thaliana chromosome I BAC F14J9 genomic sequence contains
             phyA marker, complete sequence
          Length = 95865

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                         
Query: 28    ctgttcgcgcgccccttccggaagaagggttacatcccgctcaccacctacctgcgcacc 87
             ||||||||| | || ||| |||||||||||||||| || ||  | || |||||| | |||
Sbjct: 88191 ctgttcgcgaggcctttcaggaagaagggttacattcctctatcgacttacctgaggacc 88250

                                                
Query: 88    tacaaggtcggngagtacgtcgacgtcaaggtgaa 122
             | ||||||||| || |||||||| || ||||||||
Sbjct: 88251 ttcaaggtcggcgattacgtcgatgtgaaggtgaa 88285



 Score = 50.1 bits (25), Expect = 0.002
 Identities = 75/92 (81%)
 Strand = Plus / Minus

                                                                         
Query: 28    ctgttcgcgcgccccttccggaagaagggttacatcccgctcaccacctacctgcgcacc 87
             ||||||||| | || ||| ||||||||||||| || || ||| |||| |||||    |||
Sbjct: 44860 ctgttcgcgagaccattcaggaagaagggttatattccactctccacttacctcataacc 44801

                                             
Query: 88    tacaaggtcggngagtacgtcgacgtcaaggt 119
             | ||||||||| || |||||||| ||||||||
Sbjct: 44800 ttcaaggtcggcgattacgtcgatgtcaaggt 44769
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>gb|BT000775.1| Arabidopsis thaliana clone RAFL04-10-C15 (R11681) putative 60S
           ribosomal protein L21 (At1g09590) mRNA, complete cds
          Length = 672

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                       
Query: 28  ctgttcgcgcgccccttccggaagaagggttacatcccgctcaccacctacctgcgcacc 87
           ||||||||| | || ||| |||||||||||||||| || ||  | || |||||| | |||
Sbjct: 54  ctgttcgcgaggcctttcaggaagaagggttacattcctctatcgacttacctgaggacc 113

                                              
Query: 88  tacaaggtcggngagtacgtcgacgtcaaggtgaa 122
           | ||||||||| || |||||||| || ||||||||
Sbjct: 114 ttcaaggtcggcgattacgtcgatgtgaaggtgaa 148
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>gb|AY059119.1| Arabidopsis thaliana putative 60S ribosomal protein L21 (At1g09590)
           mRNA, complete cds
          Length = 526

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                       
Query: 28  ctgttcgcgcgccccttccggaagaagggttacatcccgctcaccacctacctgcgcacc 87
           ||||||||| | || ||| |||||||||||||||| || ||  | || |||||| | |||
Sbjct: 40  ctgttcgcgaggcctttcaggaagaagggttacattcctctatcgacttacctgaggacc 99

                                              
Query: 88  tacaaggtcggngagtacgtcgacgtcaaggtgaa 122
           | ||||||||| || |||||||| || ||||||||
Sbjct: 100 ttcaaggtcggcgattacgtcgatgtgaaggtgaa 134
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>gb|AF370227.1| Arabidopsis thaliana putative 60S ribosomal protein L21 (At1g09590)
           mRNA, complete cds
          Length = 674

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                       
Query: 28  ctgttcgcgcgccccttccggaagaagggttacatcccgctcaccacctacctgcgcacc 87
           ||||||||| | || ||| |||||||||||||||| || ||  | || |||||| | |||
Sbjct: 54  ctgttcgcgaggcctttcaggaagaagggttacattcctctatcgacttacctgaggacc 113

                                              
Query: 88  tacaaggtcggngagtacgtcgacgtcaaggtgaa 122
           | ||||||||| || |||||||| || ||||||||
Sbjct: 114 ttcaaggtcggcgattacgtcgatgtgaaggtgaa 148
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>emb|BX816463.1|CNS0AANS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH4ZD12 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 569

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                       
Query: 28  ctgttcgcgcgccccttccggaagaagggttacatcccgctcaccacctacctgcgcacc 87
           ||||||||| | || ||| |||||||||||||||| || ||  | || |||||| | |||
Sbjct: 22  ctgttcgcgaggcctttcaggaagaagggttacattcctctatcgacttacctgaggacc 81

                                              
Query: 88  tacaaggtcggngagtacgtcgacgtcaaggtgaa 122
           | ||||||||| || |||||||| || ||||||||
Sbjct: 82  ttcaaggtcggcgattacgtcgatgtgaaggtgaa 116
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>emb|BX814226.1|CNS0AC0R Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB62ZA08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 674

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 75/92 (81%)
 Strand = Plus / Plus

                                                                       
Query: 28  ctgttcgcgcgccccttccggaagaagggttacatcccgctcaccacctacctgcgcacc 87
           ||||||||| | || ||| ||||||||||||| || ||  || |||| |||||  | |||
Sbjct: 46  ctgttcgcgagaccattcaggaagaagggttatattccaatctccacttacctcagaacc 105

                                           
Query: 88  tacaaggtcggngagtacgtcgacgtcaaggt 119
           | ||||||||| || |||||||| ||||||||
Sbjct: 106 ttcaaggtcggcgattacgtcgatgtcaaggt 137
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>dbj|AP004496.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT11C13, TM0029a,
             complete sequence
          Length = 53909

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 65/79 (82%)
 Strand = Plus / Plus

                                                                         
Query: 37    cgccccttccggaagaagggttacatcccgctcaccacctacctgcgcacctacaaggtc 96
             ||||||||| ||||||||||   |||||| |||||||||||||| || || |||    ||
Sbjct: 14769 cgccccttcaggaagaagggaaccatccccctcaccacctacctccgtacgtaccgcatc 14828

                                
Query: 97    ggngagtacgtcgacgtca 115
             || || |||||||||||||
Sbjct: 14829 ggcgactacgtcgacgtca 14847
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>ref|XM_774277.1| Giardia lamblia ATCC 50803 ribosomal protein rpl21
           (GLP_165_41283_41762) partial mRNA
          Length = 480

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 34/39 (87%)
 Strand = Plus / Plus

                                                  
Query: 87  ctacaaggtcggngagtacgtcgacgtcaaggtgaacgg 125
           ||||||| ||||  |||||||| || |||||||||||||
Sbjct: 99  ctacaagctcggccagtacgtcaacatcaaggtgaacgg 137
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>gb|DQ115823.1| Cyanobacteria phage AS-1 contig_16 genomic sequence
          Length = 1641

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 20   cgcgcgacctgttcgcgcgc 39
            ||||||||||||||||||||
Sbjct: 1022 cgcgcgacctgttcgcgcgc 1041
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>ref|NM_193726.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 546

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 3   tggtctgcggtcgcggacgcgcg 25
           ||||| |||||||||||||||||
Sbjct: 123 tggtcggcggtcgcggacgcgcg 145
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 19      acgcgcgacctgttcgcgc 37
               |||||||||||||||||||
Sbjct: 3072540 acgcgcgacctgttcgcgc 3072522
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 18     gacgcgcgacctgttcgcgcgcc 40
              ||||||||||||| |||||||||
Sbjct: 988858 gacgcgcgacctgctcgcgcgcc 988836
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 72     cacctacctgcgcacctac 90
              |||||||||||||||||||
Sbjct: 846001 cacctacctgcgcacctac 846019
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 21     gcgcgacctgttcgcgcgc 39
              |||||||||||||||||||
Sbjct: 399143 gcgcgacctgttcgcgcgc 399161
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>emb|AL162274.17| Human DNA sequence from clone RP11-45A17 on chromosome 10 Contains the
              BNIP3 gene for BCL2/adenovirus E1B 19kD-interacting protein
              3, the 5' end of a novel gene, possible ortholog of mouse
              RIKEN cDNA 6330417G02 geneand CpG islands, complete
              sequence
          Length = 148891

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 67     ctcaccacctacctgcgca 85
              |||||||||||||||||||
Sbjct: 100518 ctcaccacctacctgcgca 100536
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 3        tggtctgcggtcgcggacgcgcg 25
                ||||| |||||||||||||||||
Sbjct: 17719837 tggtcggcggtcgcggacgcgcg 17719859
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 20      cgcgcgacctgttcgcgcg 38
               |||||||||||||||||||
Sbjct: 8710522 cgcgcgacctgttcgcgcg 8710504
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>dbj|AP003217.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0094H06
          Length = 147245

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 3      tggtctgcggtcgcggacgcgcg 25
              ||||| |||||||||||||||||
Sbjct: 101372 tggtcggcggtcgcggacgcgcg 101394
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>gb|AE004990.1| Halobacterium sp. NRC-1 section 21 of 170 of the complete genome
          Length = 12326

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 32    tcgcgcgccccttccggaa 50
             |||||||||||||||||||
Sbjct: 10382 tcgcgcgccccttccggaa 10400
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 24      cgacctgttcgcgcgcccc 42
               |||||||||||||||||||
Sbjct: 1533112 cgacctgttcgcgcgcccc 1533130
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 72      cacctacctgcgcacctac 90
               |||||||||||||||||||
Sbjct: 2470619 cacctacctgcgcacctac 2470601


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 388,664
Number of Sequences: 3902068
Number of extensions: 388664
Number of successful extensions: 27448
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26884
Number of HSP's gapped (non-prelim): 564
length of query: 126
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 105
effective length of database: 17,151,101,840
effective search space: 1800865693200
effective search space used: 1800865693200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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