>PUR4_DROME (P35421) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)|
           (FGAM synthase) (FGAMS) (Formylglycinamide ribotide
           amidotransferase) (FGARAT) (Formylglycinamide ribotide
           synthetase) (Adenosine-2)
          Length = 1354

 Score = 32.3 bits (72), Expect = 0.94
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +3

Query: 138 GSARTRPATCSTRFKLSLKSMSFAPEASEEVPPLGFKRTPCIFSK 272
           G +  R    STR+ ++    S APEA+  VP LG + T C++++
Sbjct: 112 GYSEVRRMETSTRYLVTFGEGSKAPEAARFVPLLGDRMTQCLYTE 156

>P200_MYCPN (P75211) Protein P200|
          Length = 1036

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 18/88 (20%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
 Frame = +1

Query: 304 IKRDVCDKLVESLCSKRKDHFVYDPLSTSESSSFRNDNTCDELDLRIASVLQSTGHHYEG 483
           +K+ + +  ++    K++  F+  P  TS  +  R+DN   E  +   ++ Q+   HY  
Sbjct: 73  VKKQIVESSIDFFDEKKRGVFIVPPAGTSVINDDRDDNKAVEETVSKTAISQNQLAHYAN 132

Query: 484 GFWDDGQKYD---VADKRHVAIVTTRQS 558
               + ++++   VA + +  + +TR S
Sbjct: 133 SELVETEQFELKPVALEHNQVLTSTRHS 160

>TRAJ9_ECOLI (Q00738) Protein traJ|
          Length = 215

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -3

Query: 278 DCFRKYARSSFKS--QWWYFLRCFRCKAHRFQAELEPC 171
           +CF K  RSSF S  +W+  L+   CK    +AE+E C
Sbjct: 46  NCFEKLIRSSFNSCDEWFDSLK-LECKLQLSRAEIESC 82

>STU1_YEAST (P38198) Mitotic spindle protein STU1|
          Length = 1513

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = -3

Query: 335 STNLSHTSLFIPSWSNNGPDCFRKYARSSFKSQWWYFLRCFRCKAHR 195
           ++ L +  ++I  W   G    +   R + +  +WYF +C+   A R
Sbjct: 499 TSKLENNIIYIEEWLKKGISDSQTTVREAMRLTFWYFYKCYPTNAKR 545

>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 550

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 106 GRQGAPQGPRPEAPGPGQRRAPQGSS 183
           G  GAP+GP    PG G RR P G +
Sbjct: 522 GPGGAPRGPGGRPPGGGNRRPPGGGN 547

>IF2_STRAW (Q82K53) Translation initiation factor IF-2|
          Length = 1046

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +1

Query: 106 GRQGAPQGPRPEAPGPGQRRAPQ 174
           G  GAP GPRP+  G GQ RAP+
Sbjct: 242 GGAGAPGGPRPQGAG-GQDRAPR 263

>YAED_SCHPO (Q09853) Hypothetical protein C23D3.13c in chromosome I|
          Length = 1616

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +1

Query: 268 LKQSGPLFDQLGIKRDVCDKLVESLCSKRKDHFVYDPLSTSESSSFRNDNTCDELDLRIA 447
           L++S  +F    I   VC   ++     + DH  +  +S S S  F+  N   EL  R A
Sbjct: 768 LRKSSEVFYSFSILETVCSCNLDRFLDSKLDHSGWSLISKSLSEVFKIINVAPELRTRAA 827

Query: 448 SVL 456
           + L
Sbjct: 828 NCL 830


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,845,675
Number of Sequences: 219361
Number of extensions: 1347213
Number of successful extensions: 5029
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5015
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)