ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal25j11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y1582_MYCLE (Q9CBU4) Hypothetical zinc metalloprotease ML1582 (E... 28 5.3
2Y072_CHLTR (O84075) Hypothetical zinc metalloprotease CT_072 (EC... 28 5.3
3DPO4_HALSA (Q9HQT4) DNA polymerase IV (EC 2.7.7.7) (Pol IV) 28 9.1

>Y1582_MYCLE (Q9CBU4) Hypothetical zinc metalloprotease ML1582 (EC 3.4.24.-)|
          Length = 404

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 51  AWAGLLINAINSIPAGELDGGRIALAMWGR 140
           A   L++ AIN +P    DGG IA+A++ R
Sbjct: 322 AQLNLILGAINLVPLLPFDGGHIAIAVFER 351



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>Y072_CHLTR (O84075) Hypothetical zinc metalloprotease CT_072 (EC 3.4.24.-)|
          Length = 619

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +3

Query: 51  AWAGLL---INAINSIPAGELDGGRIALAMW 134
           AW GL+   +  +N +P   LDGG I L +W
Sbjct: 547 AWIGLISVNLAVLNLLPIPVLDGGYILLCLW 577



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>DPO4_HALSA (Q9HQT4) DNA polymerase IV (EC 2.7.7.7) (Pol IV)|
          Length = 411

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 2   CSKRRNTAIHKPTGIVGLGWSPDQ 73
           C +RR  A+     +VG+G+ PDQ
Sbjct: 30  CERRREPALRGAPVVVGMGYEPDQ 53


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,519,665
Number of Sequences: 219361
Number of extensions: 314222
Number of successful extensions: 914
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 80,573,946
effective HSP length: 23
effective length of database: 75,528,643
effective search space used: 1812687432
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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