ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal25i16 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468034.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1418 Score = 137 bits (69), Expect = 1e-29 Identities = 156/184 (84%), Gaps = 1/184 (0%) Strand = Plus / Plus Query: 1 gcgccgccgtcctgggcctcgcacctcgccctcgcccctccccacaccttctccctcggc 60 |||||||||||||||||||||||||| ||| |||||| | || |||||||| |||||| Sbjct: 162 gcgccgccgtcctgggcctcgcacctgtcccccgccccctcgcagaccttctcgctcggc 221 Query: 61 catttcccaaccccgattcacaagtggaacctgccaaatctgccggnagggcactgaagt 120 |||||||| || ||||| ||||||||||| ||||| ||| |||| | | ||||| || || Sbjct: 222 catttcccgacgccgatccacaagtggaatctgcccaatttgcc-gaatggcacggaggt 280 Query: 121 atggatcaagcgggatgatctgtccggtatgcagctgagcgggaacaaggtccggaagct 180 ||||||||||| || || | || || |||||| ||||||||||||||||||||||||| Sbjct: 281 gtggatcaagcgagacgacatctcaggcatgcagttgagcgggaacaaggtccggaagct 340 Query: 181 cgag 184 |||| Sbjct: 341 cgag 344
>dbj|AK071811.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113F04, full insert sequence Length = 1417 Score = 137 bits (69), Expect = 1e-29 Identities = 156/184 (84%), Gaps = 1/184 (0%) Strand = Plus / Plus Query: 1 gcgccgccgtcctgggcctcgcacctcgccctcgcccctccccacaccttctccctcggc 60 |||||||||||||||||||||||||| ||| |||||| | || |||||||| |||||| Sbjct: 161 gcgccgccgtcctgggcctcgcacctgtcccccgccccctcgcagaccttctcgctcggc 220 Query: 61 catttcccaaccccgattcacaagtggaacctgccaaatctgccggnagggcactgaagt 120 |||||||| || ||||| ||||||||||| ||||| ||| |||| | | ||||| || || Sbjct: 221 catttcccgacgccgatccacaagtggaatctgcccaatttgcc-gaatggcacggaggt 279 Query: 121 atggatcaagcgggatgatctgtccggtatgcagctgagcgggaacaaggtccggaagct 180 ||||||||||| || || | || || |||||| ||||||||||||||||||||||||| Sbjct: 280 gtggatcaagcgagacgacatctcaggcatgcagttgagcgggaacaaggtccggaagct 339 Query: 181 cgag 184 |||| Sbjct: 340 cgag 343
>gb|BT019000.1| Zea mays clone Contig488.F mRNA sequence Length = 1411 Score = 113 bits (57), Expect = 2e-22 Identities = 150/180 (83%), Gaps = 1/180 (0%) Strand = Plus / Plus Query: 1 gcgccgccgtcctgggcctcgcacctcgccctcgcccctccccacaccttctccctcggc 60 |||||||||| |||||| |||||||| ||| | ||| ||| |||||||| |||||| Sbjct: 120 gcgccgccgttgtgggccacgcacctctcccccatgccttgccataccttctcgctcggc 179 Query: 61 catttcccaaccccgattcacaagtggaacctgccaaatctgccggnagggcactgaagt 120 ||||||||||| ||||||||||||||||| ||||| ||| |||||| | || || ||||| Sbjct: 180 catttcccaacaccgattcacaagtggaatctgcccaatttgccggaa-ggaacggaagt 238 Query: 121 atggatcaagcgggatgatctgtccggtatgcagctgagcgggaacaaggtccggaagct 180 ||||||||||| || ||| | || || |||||| |||| || ||||||||||||||||| Sbjct: 239 gtggatcaagcgagacgatttatcaggcatgcagttgagtggaaacaaggtccggaagct 298
>gb|AY106365.1| Zea mays PCO076269 mRNA sequence Length = 1286 Score = 113 bits (57), Expect = 2e-22 Identities = 150/180 (83%), Gaps = 1/180 (0%) Strand = Plus / Plus Query: 1 gcgccgccgtcctgggcctcgcacctcgccctcgcccctccccacaccttctccctcggc 60 |||||||||| |||||| |||||||| ||| | ||| ||| |||||||| |||||| Sbjct: 152 gcgccgccgttgtgggccacgcacctctcccccatgccttgccataccttctcgctcggc 211 Query: 61 catttcccaaccccgattcacaagtggaacctgccaaatctgccggnagggcactgaagt 120 ||||||||||| ||||||||||||||||| ||||| ||| |||||| | || || ||||| Sbjct: 212 catttcccaacaccgattcacaagtggaatctgcccaatttgccggaa-ggaacggaagt 270 Query: 121 atggatcaagcgggatgatctgtccggtatgcagctgagcgggaacaaggtccggaagct 180 ||||||||||| || ||| | || || |||||| |||| || ||||||||||||||||| Sbjct: 271 gtggatcaagcgagacgatttatcaggcatgcagttgagtggaaacaaggtccggaagct 330
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 63.9 bits (32), Expect = 2e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 149 atgcagctgagcgggaacaaggtccggaagctcgag 184 |||||| ||||||||||||||||||||||||||||| Sbjct: 32666296 atgcagttgagcgggaacaaggtccggaagctcgag 32666261 Score = 61.9 bits (31), Expect = 6e-07 Identities = 55/63 (87%) Strand = Plus / Minus Query: 1 gcgccgccgtcctgggcctcgcacctcgccctcgcccctccccacaccttctccctcggc 60 |||||||||||||||||||||||||| ||| |||||| | || |||||||| |||||| Sbjct: 32666787 gcgccgccgtcctgggcctcgcacctgtcccccgccccctcgcagaccttctcgctcggc 32666728 Query: 61 cat 63 ||| Sbjct: 32666727 cat 32666725 Score = 42.1 bits (21), Expect = 0.58 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 cgccgccgtcctgggcctcgc 22 ||||||||||||||||||||| Sbjct: 30488446 cgccgccgtcctgggcctcgc 30488426
>dbj|AP004068.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1611_C08 Length = 135386 Score = 63.9 bits (32), Expect = 2e-07 Identities = 35/36 (97%) Strand = Plus / Minus Query: 149 atgcagctgagcgggaacaaggtccggaagctcgag 184 |||||| ||||||||||||||||||||||||||||| Sbjct: 93667 atgcagttgagcgggaacaaggtccggaagctcgag 93632 Score = 61.9 bits (31), Expect = 6e-07 Identities = 55/63 (87%) Strand = Plus / Minus Query: 1 gcgccgccgtcctgggcctcgcacctcgccctcgcccctccccacaccttctccctcggc 60 |||||||||||||||||||||||||| ||| |||||| | || |||||||| |||||| Sbjct: 94158 gcgccgccgtcctgggcctcgcacctgtcccccgccccctcgcagaccttctcgctcggc 94099 Query: 61 cat 63 ||| Sbjct: 94098 cat 94096
>gb|AC093420.2| Homo sapiens chromosome 1 clone RP11-282K6, complete sequence Length = 193766 Score = 44.1 bits (22), Expect = 0.15 Identities = 28/30 (93%) Strand = Plus / Plus Query: 27 cgccctcgcccctccccacaccttctccct 56 |||||| |||||||||||||||| |||||| Sbjct: 107198 cgccctagcccctccccacacctgctccct 107227
>ref|XM_391830.2| PREDICTED: Apis mellifera similar to CG15013-PA, isoform A (LOC408277), mRNA Length = 2137 Score = 44.1 bits (22), Expect = 0.15 Identities = 22/22 (100%) Strand = Plus / Minus Query: 14 gggcctcgcacctcgccctcgc 35 |||||||||||||||||||||| Sbjct: 61 gggcctcgcacctcgccctcgc 40
>ref|XM_467623.1| Oryza sativa (japonica cultivar-group), mRNA Length = 558 Score = 42.1 bits (21), Expect = 0.58 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 cgccgccgtcctgggcctcgc 22 ||||||||||||||||||||| Sbjct: 66 cgccgccgtcctgggcctcgc 86
>gb|BT013578.1| Lycopersicon esculentum clone 132323R, mRNA sequence Length = 1492 Score = 42.1 bits (21), Expect = 0.58 Identities = 45/53 (84%) Strand = Plus / Plus Query: 43 cacaccttctccctcggccatttcccaaccccgattcacaagtggaacctgcc 95 |||||||| || || || ||||| || || || |||||||||||||||||||| Sbjct: 245 cacaccttttcgcttggtcattttccgactccaattcacaagtggaacctgcc 297
>gb|AC149292.15| Sus scrofa clone ch242-69g11, complete sequence Length = 215342 Score = 42.1 bits (21), Expect = 0.58 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 ggccatttcccaaccccgatt 78 ||||||||||||||||||||| Sbjct: 105212 ggccatttcccaaccccgatt 105192
>dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0643A10 Length = 187931 Score = 42.1 bits (21), Expect = 0.58 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 cgccgccgtcctgggcctcgc 22 ||||||||||||||||||||| Sbjct: 454 cgccgccgtcctgggcctcgc 434
>dbj|AP004888.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0617A09 Length = 134804 Score = 42.1 bits (21), Expect = 0.58 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 cgccgccgtcctgggcctcgc 22 ||||||||||||||||||||| Sbjct: 94494 cgccgccgtcctgggcctcgc 94474
>gb|AC161225.14| Mus musculus chromosome 5, clone RP23-37G13, complete sequence Length = 165525 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 cccctccccacaccttctcc 54 |||||||||||||||||||| Sbjct: 98322 cccctccccacaccttctcc 98303
>gb|AC160638.6| Mus musculus BAC clone RP23-99K6 from chromosome 15, complete sequence Length = 218870 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 ggcactgaagtatggatcaa 129 |||||||||||||||||||| Sbjct: 65436 ggcactgaagtatggatcaa 65417
>gb|AC108527.6| Rattus norvegicus 9 BAC CH230-7F11 (Children's Hospital Oakland Research Institute) complete sequence Length = 225777 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 cctccccacaccttctccct 56 |||||||||||||||||||| Sbjct: 19945 cctccccacaccttctccct 19964
>emb|CR380948.1| Candida glabrata strain CBS138 chromosome B complete sequence Length = 502101 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 cctcgccctcgcccctcccc 43 |||||||||||||||||||| Sbjct: 480340 cctcgccctcgcccctcccc 480321
>gb|AE005934.1| Caulobacter crescentus CB15 section 260 of 359 of the complete genome Length = 11398 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 cgccgccgtcctgggcctcg 21 |||||||||||||||||||| Sbjct: 10069 cgccgccgtcctgggcctcg 10088
>gb|AC117379.3| Homo sapiens 3 BAC RP11-392C7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181191 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 cccctccccacaccttctcc 54 |||||||||||||||||||| Sbjct: 146786 cccctccccacaccttctcc 146767
>gb|DQ156348.1| Uncultured marine group II euryarchaeote HF70_59C08 clone fosmid HF70_59C08, complete sequence Length = 37383 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 accccgattcacaagtggaa 89 |||||||||||||||||||| Sbjct: 3816 accccgattcacaagtggaa 3797
>dbj|AB168344.1| Macaca fascicularis testis cDNA clone: QtsA-11367, similar to human hypothetical protein MGC4189 (MGC4189), mRNA, RefSeq: NM_032308.1 Length = 942 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 cctcgccctcgcccctcccc 43 |||||||||||||||||||| Sbjct: 26 cctcgccctcgcccctcccc 7
>gb|AC110619.3| Homo sapiens BAC clone RP11-649N20 from 2, complete sequence Length = 161830 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 33 cgcccctccccacaccttctccct 56 ||||||||||||||||| |||||| Sbjct: 98849 cgcccctccccacacctcctccct 98826
>emb|AM160695.1| Unidentified microorganism metagenome environmental cosmid clone 10B03, sub clone 10B03-P1 Length = 778 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 tatggatcaagcgggatgat 139 |||||||||||||||||||| Sbjct: 447 tatggatcaagcgggatgat 428
>gb|M18043.1|CHKCFOS Chicken c-fos proto-oncogene, complete cds Length = 3858 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 cctcgccctcgcccctcccc 43 |||||||||||||||||||| Sbjct: 296 cctcgccctcgcccctcccc 315
>ref|NM_131913.1| Rattus norvegicus X-prolyl aminopeptidase (aminopeptidase P) 1, soluble (Xpnpep1), mRNA Length = 2381 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 cccacaccttctccctcgg 59 ||||||||||||||||||| Sbjct: 912 cccacaccttctccctcgg 894
>gb|BC061758.1| Rattus norvegicus X-prolyl aminopeptidase (aminopeptidase P) 1, soluble, mRNA (cDNA clone MGC:72323 IMAGE:5600093), complete cds Length = 2444 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 cccacaccttctccctcgg 59 ||||||||||||||||||| Sbjct: 1022 cccacaccttctccctcgg 1004
>gb|AC164091.3| Mus musculus BAC clone RP23-97M20 from chromosome 3, complete sequence Length = 218807 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 cccctccccacaccttctc 53 ||||||||||||||||||| Sbjct: 80164 cccctccccacaccttctc 80182
>gb|AC023591.8| Homo sapiens chromosome 15, clone RP11-768L13, complete sequence Length = 171456 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 25 ctcgccctcgcccctcccc 43 ||||||||||||||||||| Sbjct: 5045 ctcgccctcgcccctcccc 5063
>gb|AC007950.7| Homo sapiens chromosome 15, clone RP11-44M14, complete sequence Length = 170979 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 25 ctcgccctcgcccctcccc 43 ||||||||||||||||||| Sbjct: 105668 ctcgccctcgcccctcccc 105650
>emb|AL355512.22| Human DNA sequence from clone RP11-525A16 on chromosome 10 Contains the DUSP5 gene for dual specificity phosphatase 5 (HVH3), two novel genes, a high-mobility group box 3 (HMGB3) pseudogene and a CpG island, complete sequence Length = 199785 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 caccttctccctcggccat 63 ||||||||||||||||||| Sbjct: 44281 caccttctccctcggccat 44263
>gb|AC139206.5| Mus musculus chromosome 1, clone RP23-82P18, complete sequence Length = 304494 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 ctccccacaccttctccct 56 ||||||||||||||||||| Sbjct: 134782 ctccccacaccttctccct 134800
>emb|AL034552.23|HS824J5 Human DNA sequence from clone RP5-824J5 on chromosome 20q11.23-12 Contains GSSs and STSs, complete sequence Length = 55569 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 40 ccccacaccttctccctcggcca 62 ||||||||||||||||| ||||| Sbjct: 31426 ccccacaccttctccctgggcca 31404
>emb|AJ515144.2|AXY515144 Achromobacter xylosoxidans plasmid pA81, strain A8 Length = 98192 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 3 gccgccgtcctgggcctcg 21 ||||||||||||||||||| Sbjct: 57304 gccgccgtcctgggcctcg 57322
>gb|AC162692.2| Mus musculus chromosome 1, clone RP23-445K23, complete sequence Length = 181625 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 38 ctccccacaccttctccct 56 ||||||||||||||||||| Sbjct: 877 ctccccacaccttctccct 859
>emb|AL645843.14| Mouse DNA sequence from clone RP23-338K15 on chromosome 11 Contains a eukaryotic translation elongation factor 2 (Eef2) pseudogene, complete sequence Length = 141245 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 33 cgcccctccccacaccttctccc 55 |||||| |||||||||||||||| Sbjct: 97057 cgccccaccccacaccttctccc 97035
>gb|AC010649.8| Homo sapiens chromosome 19 clone LLNLR-304C3, complete sequence Length = 37492 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 ccctcgcccctccccacac 47 ||||||||||||||||||| Sbjct: 31658 ccctcgcccctccccacac 31676
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 cgccgccgtcctgggcctc 20 ||||||||||||||||||| Sbjct: 4909378 cgccgccgtcctgggcctc 4909360
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome Length = 1669695 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 23 acctcgccctcgcccctccccac 45 ||||||||||||||| ||||||| Sbjct: 458596 acctcgccctcgcccttccccac 458574
>emb|AJ327796.1|HSA327796 Homo sapiens genomic sequence surrounding NotI site, clone NR5-HK18C Length = 662 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 25 ctcgccctcgcccctcccc 43 ||||||||||||||||||| Sbjct: 280 ctcgccctcgcccctcccc 298
>gb|AC154823.2| Mus musculus BAC clone RP24-538J1 from 17, complete sequence Length = 187746 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 39 tccccacaccttctccctc 57 ||||||||||||||||||| Sbjct: 881 tccccacaccttctccctc 863
>gb|AC154557.2| Mus musculus BAC clone RP23-425M9 from 17, complete sequence Length = 186378 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 39 tccccacaccttctccctc 57 ||||||||||||||||||| Sbjct: 180356 tccccacaccttctccctc 180338
>gb|AC023593.14| Homo sapiens 3 BAC RP11-427I6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 189757 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 cctgggcctcgcacctcgc 29 ||||||||||||||||||| Sbjct: 152568 cctgggcctcgcacctcgc 152586
>gb|AF038591.1|AF038591 Rattus norvegicus cytoplasmic aminopeptidase P (APP) mRNA, complete cds Length = 2381 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 cccacaccttctccctcgg 59 ||||||||||||||||||| Sbjct: 912 cccacaccttctccctcgg 894
>emb|AL954135.7| Mouse DNA sequence from clone RP23-231H10 on chromosome 4, complete sequence Length = 100102 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 cccctccccacaccttctc 53 ||||||||||||||||||| Sbjct: 13340 cccctccccacaccttctc 13322
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 146 ggtatgcagctgagcgggaacaa 168 |||| |||||||||||||||||| Sbjct: 1079911 ggtacgcagctgagcgggaacaa 1079889
>emb|AL513470.8| Mouse DNA sequence from clone RP21-464E5 on chromosome 1, complete sequence Length = 166333 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 38 ctccccacaccttctccct 56 ||||||||||||||||||| Sbjct: 74197 ctccccacaccttctccct 74179
>gb|AC118274.9| Homo sapiens chromosome 15, clone RP11-265M18, complete sequence Length = 177432 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 25 ctcgccctcgcccctcccc 43 ||||||||||||||||||| Sbjct: 17546 ctcgccctcgcccctcccc 17528
>gb|AC159709.8| Mus musculus 10 BAC RP23-136O17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 202716 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 29 ccctcgcccctccccacaccttc 51 |||| |||||||||||||||||| Sbjct: 150567 cccttgcccctccccacaccttc 150589 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,124,377 Number of Sequences: 3902068 Number of extensions: 1124377 Number of successful extensions: 77737 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77353 Number of HSP's gapped (non-prelim): 380 length of query: 184 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 162 effective length of database: 17,147,199,772 effective search space: 2777846363064 effective search space used: 2777846363064 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
