ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal25i15 |
|---|---|
| Clone Library Name | barley_pub |
>TCL2_CAEEL (Q9N428) T-cell defective protein 2| Length = 435 Score = 30.8 bits (68), Expect = 1.3 Identities = 12/35 (34%), Positives = 23/35 (65%) Frame = +1 Query: 178 SLKRGRSKLIRIFRLCNYFPPRKEMMRFSSNWVLI 282 +LK + K +RI++L + P+KE+ +S W++I Sbjct: 341 ALKEAKEKEMRIWKLAPFETPKKEVPLYSGRWLVI 375
>Y157_AQUAE (O66547) Hypothetical protein aq_157 precursor| Length = 162 Score = 29.6 bits (65), Expect = 2.9 Identities = 13/27 (48%), Positives = 21/27 (77%) Frame = +3 Query: 129 FEKVMEEKRKALDALKKSEERKVEIDK 209 ++K+++EK+K L+ALKKS E K +K Sbjct: 53 YQKLIQEKQKKLEALKKSLESKALSEK 79
>KCY_PYRHO (O58988) Cytidylate kinase (EC 2.7.4.14) (CK) (Cytidine| monophosphate kinase) (CMP kinase) Length = 192 Score = 29.6 bits (65), Expect = 2.9 Identities = 13/41 (31%), Positives = 25/41 (60%) Frame = +3 Query: 129 FEKVMEEKRKALDALKKSEERKVEIDKDLQAMQLLSTKKGN 251 F ++ +EK +L+ +K E EID+++ Q+ + K+GN Sbjct: 40 FRQMAKEKGMSLEEFQKYAELHPEIDREVDRRQIEAAKEGN 80
>FLHC_SALTY (O52222) Flagellar transcriptional activator flhC| Length = 192 Score = 29.3 bits (64), Expect = 3.7 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = +1 Query: 166 ML*RSLKRGRSKLIRIFRLCNYFPPRKEMMRFSSNWVL 279 ML + R +LIR+++ PP K M+ FS++W + Sbjct: 28 MLESETQLSRGRLIRLYKELRGSPPPKGMLPFSTDWFM 65
>FLHC_XENNE (Q9X9F3) Flagellar transcriptional activator flhC| Length = 194 Score = 29.3 bits (64), Expect = 3.7 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = +1 Query: 166 ML*RSLKRGRSKLIRIFRLCNYFPPRKEMMRFSSNWVL 279 ML + R +LIR+++ PP K M+ FS++W + Sbjct: 28 MLESETQLSRGRLIRLYKELRGSPPPKGMLPFSTDWFM 65
>LPP20_HELPY (P0A0V0) LPP20 lipoprotein precursor| Length = 175 Score = 28.5 bits (62), Expect = 6.4 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 7/52 (13%) Frame = +3 Query: 147 EKRKALDALKK-------SEERKVEIDKDLQAMQLLSTKKGNDEVFIKLGAD 281 EK + +DA K +E+ +DK+L A ++L+ G D VF+ +G D Sbjct: 108 EKTRTVDASGKRSISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLD 159
>LPP20_HELPJ (P0A0V1) LPP20 lipoprotein precursor| Length = 175 Score = 28.5 bits (62), Expect = 6.4 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 7/52 (13%) Frame = +3 Query: 147 EKRKALDALKK-------SEERKVEIDKDLQAMQLLSTKKGNDEVFIKLGAD 281 EK + +DA K +E+ +DK+L A ++L+ G D VF+ +G D Sbjct: 108 EKTRTVDASGKRSISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLD 159
>FLHC_SHIFL (P0ABZ0) Flagellar transcriptional activator flhC| Length = 192 Score = 28.1 bits (61), Expect = 8.3 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = +1 Query: 166 ML*RSLKRGRSKLIRIFRLCNYFPPRKEMMRFSSNWVL 279 ML + R +LI++++ PP K M+ FS++W + Sbjct: 28 MLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM 65
>FLHC_ECOLI (P0ABY7) Flagellar transcriptional activator flhC| Length = 192 Score = 28.1 bits (61), Expect = 8.3 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = +1 Query: 166 ML*RSLKRGRSKLIRIFRLCNYFPPRKEMMRFSSNWVL 279 ML + R +LI++++ PP K M+ FS++W + Sbjct: 28 MLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM 65
>FLHC_ECOL6 (P0ABY8) Flagellar transcriptional activator flhC| Length = 192 Score = 28.1 bits (61), Expect = 8.3 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = +1 Query: 166 ML*RSLKRGRSKLIRIFRLCNYFPPRKEMMRFSSNWVL 279 ML + R +LI++++ PP K M+ FS++W + Sbjct: 28 MLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM 65
>FLHC_ECO57 (P0ABY9) Flagellar transcriptional activator flhC| Length = 192 Score = 28.1 bits (61), Expect = 8.3 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = +1 Query: 166 ML*RSLKRGRSKLIRIFRLCNYFPPRKEMMRFSSNWVL 279 ML + R +LI++++ PP K M+ FS++W + Sbjct: 28 MLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM 65
>MBD1_HUMAN (Q9UIS9) Methyl-CpG-binding domain protein 1 (Methyl-CpG-binding| protein MBD1) (Protein containing methyl-CpG-binding domain 1) Length = 605 Score = 28.1 bits (61), Expect = 8.3 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = -2 Query: 57 CSHLPWCILPVRPALRRR 4 C H P C+ P RP LRR+ Sbjct: 237 CGHCPICLRPPRPGLRRQ 254
>FLHC_YEREN (O86047) Flagellar transcriptional activator flhC| Length = 193 Score = 28.1 bits (61), Expect = 8.3 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = +1 Query: 166 ML*RSLKRGRSKLIRIFRLCNYFPPRKEMMRFSSNWVL 279 ML + R +LI++++ PP K M+ FS++W + Sbjct: 28 MLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM 65
>FLHC_PROMI (O34202) Flagellar transcriptional activator flhC| Length = 193 Score = 28.1 bits (61), Expect = 8.3 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = +1 Query: 166 ML*RSLKRGRSKLIRIFRLCNYFPPRKEMMRFSSNWVL 279 ML + R +LI++++ PP K M+ FS++W + Sbjct: 28 MLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM 65
>FLHC_ERWCA (Q9X601) Flagellar transcriptional activator flhC| Length = 193 Score = 28.1 bits (61), Expect = 8.3 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = +1 Query: 166 ML*RSLKRGRSKLIRIFRLCNYFPPRKEMMRFSSNWVL 279 ML + R +LI++++ PP K M+ FS++W + Sbjct: 28 MLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM 65
>FLHC_SERMA (O85807) Flagellar transcriptional activator flhC| Length = 194 Score = 28.1 bits (61), Expect = 8.3 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = +1 Query: 166 ML*RSLKRGRSKLIRIFRLCNYFPPRKEMMRFSSNWVL 279 ML + R +LI++++ PP K M+ FS++W + Sbjct: 29 MLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFM 66
>MYH10_RAT (Q9JLT0) Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle| myosin heavy chain IIb) (NMMHC II-b) (NMMHC-IIB) (Cellular myosin heavy chain, type B) (Nonmuscle myosin heavy chain-B) (NMMHC-B) Length = 1976 Score = 28.1 bits (61), Expect = 8.3 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Frame = +3 Query: 132 EKVMEEKRKALDALKKSEERKVEID-KDLQAMQLLSTKKGNDEVFIKL 272 E +E++RK AL + ++K+EID KDL+A Q+ + K DEV +L Sbjct: 1602 EAELEDERKQR-ALAVASKKKMEIDLKDLEA-QIEAANKARDEVIKQL 1647
>MYH10_MOUSE (Q61879) Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle| myosin heavy chain IIb) (NMMHC II-b) (NMMHC-IIB) (Cellular myosin heavy chain, type B) (Nonmuscle myosin heavy chain-B) (NMMHC-B) Length = 1976 Score = 28.1 bits (61), Expect = 8.3 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Frame = +3 Query: 132 EKVMEEKRKALDALKKSEERKVEID-KDLQAMQLLSTKKGNDEVFIKL 272 E +E++RK AL + ++K+EID KDL+A Q+ + K DEV +L Sbjct: 1602 EAELEDERKQR-ALAVASKKKMEIDLKDLEA-QIEAANKARDEVIKQL 1647
>MYH10_HUMAN (P35580) Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle| myosin heavy chain IIb) (NMMHC II-b) (NMMHC-IIB) (Cellular myosin heavy chain, type B) (Nonmuscle myosin heavy chain-B) (NMMHC-B) Length = 1976 Score = 28.1 bits (61), Expect = 8.3 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Frame = +3 Query: 132 EKVMEEKRKALDALKKSEERKVEID-KDLQAMQLLSTKKGNDEVFIKL 272 E +E++RK AL + ++K+EID KDL+A Q+ + K DEV +L Sbjct: 1602 EAELEDERKQR-ALAVASKKKMEIDLKDLEA-QIEAANKARDEVIKQL 1647
>MYH10_BOVIN (Q27991) Myosin-10 (Myosin heavy chain, nonmuscle IIb) (Nonmuscle| myosin heavy chain IIb) (NMMHC II-b) (NMMHC-IIB) (Cellular myosin heavy chain, type B) (Nonmuscle myosin heavy chain-B) (NMMHC-B) Length = 1976 Score = 28.1 bits (61), Expect = 8.3 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%) Frame = +3 Query: 132 EKVMEEKRKALDALKKSEERKVEID-KDLQAMQLLSTKKGNDEVFIKL 272 E +E++RK AL + ++K+EID KDL+A Q+ + K DEV +L Sbjct: 1602 EAELEDERKQR-ALAVASKKKMEIDLKDLEA-QIEAANKARDEVIKQL 1647 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,287,443 Number of Sequences: 219361 Number of extensions: 508243 Number of successful extensions: 1482 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 1453 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1482 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
