>AAPC_PENCL (Q40784) Putative apospory-associated protein C|
          Length = 329

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
 Frame = +2

Query: 47  IYNTAPSKFTTIDQSSGLGFRLVRMGFEDMYLGSPGGMYDKFGNDY-------FLCTGPA 205
           +Y  APSK   ID      F + + G  D  + +P     K   D+        LC  PA
Sbjct: 230 VYLAAPSKIAIIDHEKKKTFVVTKEGLPDAVVWNPWDKKAKAMQDFGDAEYKNMLCVEPA 289

Query: 206 SILVPVVVGPGEEWRG 253
           ++  P+ + PGEEWRG
Sbjct: 290 AVEKPITLKPGEEWRG 305

>GATA3_CHICK (P23825) GATA-binding factor 3 (GATA-3) (Transcription factor|
           NF-E1C)
          Length = 444

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = -2

Query: 300 HHQKKSYKLSCSMTCAPLHSSPGPTTTGTRMDAGPVQRK*SLPNLSYIPPGLPRYMSSNP 121
           HH    + LS     +  HSSPGP +      +  +    S P+L   PP  P+ +S +P
Sbjct: 106 HHSASPWNLSPFSKTSIHHSSPGPLSVYPPASSSTLSAGHSSPHLFTFPPTPPKDVSPDP 165

Query: 120 ILTS 109
            +++
Sbjct: 166 SIST 169

>GATA3_BRARE (Q91428) Transcription factor GATA-3 (GATA-binding factor 3)|
          Length = 438

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = -2

Query: 300 HHQKKSYKLSCSMTCAPLHSSPGPTTTGTRMDAGPVQRK*SLPNLSYIPPGLPRYMSSNP 121
           HH    + L      +  HSSPGP +      +  +    S P+L   PP  P+ +S +P
Sbjct: 99  HHSTSPWNLGPFPKTSLHHSSPGPLSVYPPASSSSLSAGHSSPHLFTFPPTPPKDVSPDP 158

Query: 120 ILTS 109
            +++
Sbjct: 159 AIST 162

>GATA3_MOUSE (P23772) Trans-acting T-cell-specific transcription factor GATA-3|
           (GATA-binding factor 3)
          Length = 443

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = -2

Query: 300 HHQKKSYKLSCSMTCAPLHSSPGPTTTGTRMDAGPVQRK*SLPNLSYIPPGLPRYMSSNP 121
           HH    + LS     +  H SPGP +      +  +    S P+L   PP  P+ +S +P
Sbjct: 105 HHTASPWNLSPFSKTSIHHGSPGPLSVYPPASSSSLAAGHSSPHLFTFPPTPPKDVSPDP 164

Query: 120 ILTS 109
            L++
Sbjct: 165 SLST 168

>GATA3_HUMAN (P23771) Trans-acting T-cell-specific transcription factor GATA-3|
           (GATA-binding factor 3)
          Length = 443

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = -2

Query: 300 HHQKKSYKLSCSMTCAPLHSSPGPTTTGTRMDAGPVQRK*SLPNLSYIPPGLPRYMSSNP 121
           HH    + LS     +  H SPGP +      +  +    + P+L   PP  P+ +S +P
Sbjct: 106 HHTASPWNLSPFSKTSIHHGSPGPLSVYPPASSSSLSGGHASPHLFTFPPTPPKDVSPDP 165

Query: 120 ILTS 109
            L++
Sbjct: 166 SLST 169

>YT44_STRFR (P20188) Hypothetical 44.4 kDa protein in transposon Tn4556|
          Length = 395

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 139 VHVLEPHPHKPEPQPARLVD 80
           +H+   HPH+P PQP +L D
Sbjct: 248 LHLRTRHPHRPAPQPVQLRD 267

>PSAA_ENCLE (Q9MUK4) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)|
           (PSI-A) (Fragment)
          Length = 719

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -1

Query: 157 SSWAAQVHVLEPHPHKPEPQPARLVD--GGELGGRGVVDALLPLPXGGAAY 11
           + W    H L P    P+   +  V   GG+L   G   ALLP+P G A +
Sbjct: 470 AQWVQNTHALAPGSTAPDATASTSVTWGGGDLVAVGGKVALLPIPLGTADF 520

>ACCA_PROMM (Q7V6D6) Acetyl-coenzyme A carboxylase carboxyl transferase subunit|
           alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase
           carboxyltransferase subunit alpha) (ACCase subunit
           alpha)
          Length = 329

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 109 PEPQPARLVDGGELGGRGVVDALLPLPXGG 20
           PE   A  + G +L   GVVD +LP P GG
Sbjct: 243 PEAAAALKITGPDLLNLGVVDEVLPEPAGG 272

>PSAA_SEQSE (Q9MUK3) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)|
           (PSI-A) (Fragment)
          Length = 720

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -1

Query: 157 SSWAAQVHVLEPHPHKPEPQPARLVD--GGELGGRGVVDALLPLPXGGAAY 11
           + W    H L P    P+   +  +   GG+L   G   ALLP+P G A +
Sbjct: 472 AQWIQNTHALAPSLTAPDATASTSLTWGGGDLVAVGAKVALLPIPLGTADF 522

>PEX6_RAT (P54777) Peroxisome assembly factor 2 (PAF-2) (Peroxisomal-type|
           ATPase 1) (Peroxin-6) (Peroxisomal biogenesis factor 6)
          Length = 978

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -1

Query: 145 AQVHVLEPHPHKPEPQPARLVDGG--ELGGRGVVDALLPLPXGGAAYTLL 2
           A +HVLEP P +  P    L  GG   + G G+V AL P     A   LL
Sbjct: 4   AVLHVLEPFPTETPPLAVLLPPGGPWPVTGVGLVLALRPASESPAGPALL 53

>PSAA_CYCRE (Q9MUK0) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)|
           (PSI-A) (Fragment)
          Length = 717

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -1

Query: 157 SSWAAQVHVLEPHPHKPEPQPARLVD--GGELGGRGVVDALLPLPXGGAAY 11
           + W    H L P    P+   +  +   GG+L   G   ALLP+P G A +
Sbjct: 470 AQWVQNTHALAPGSTAPDATASTSLTWGGGDLVAVGGKVALLPIPLGTADF 520

>TENS1_BOVIN (Q9GLM4) Tensin-1|
          Length = 1715

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 23/67 (34%), Positives = 30/67 (44%)
 Frame = -2

Query: 255 APLHSSPGPTTTGTRMDAGPVQRK*SLPNLSYIPPGLPRYMSSNPILTSLNPSPLDWSMV 76
           +P  SS       T+   GP Q   SLP L+  P   P+ ++S+P  T     PL     
Sbjct: 816 SPATSSSSSFLPTTQSSVGPQQPPASLPGLTTQPQLPPKEVTSDPSRTP-EEEPL----- 869

Query: 75  VNLEGAV 55
            NLEG V
Sbjct: 870 -NLEGLV 875

>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (RPB1) (Fragment)
          Length = 467

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
 Frame = -2

Query: 255 APLHSSPGPTTTGTRMDAGPVQRK*SLPNLSYIP------PGLPRYMSSNPILTSLNPS 97
           +P +S   P  T T  +  P     S  + SY P      P  PRY   +P  T  +PS
Sbjct: 263 SPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPS 321

>MCEA_KLEPN (Q9Z4N4) Microcin E492 precursor (MccE492)|
          Length = 103

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 122 GFEDMYLGSPGGMYDKFGNDYFLCTGPASILVPVVVGPGEEWRGA 256
           G     LG+ GG     G    +  GP ++ +PV++GP   W G+
Sbjct: 47  GLGSAALGAAGGALQTVGQG-LIDHGPVNVPIPVLIGP--SWNGS 88

>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RPB1)
          Length = 1970

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
 Frame = -2

Query: 255  APLHSSPGPTTTGTRMDAGPVQRK*SLPNLSYIP------PGLPRYMSSNPILTSLNPS 97
            +P +S   P  T T  +  P     S  + SY P      P  PRY   +P  T  +PS
Sbjct: 1766 SPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPS 1824

>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RPB1)
          Length = 1970

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
 Frame = -2

Query: 255  APLHSSPGPTTTGTRMDAGPVQRK*SLPNLSYIP------PGLPRYMSSNPILTSLNPS 97
            +P +S   P  T T  +  P     S  + SY P      P  PRY   +P  T  +PS
Sbjct: 1766 SPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPS 1824

>NR4A3_HUMAN (Q92570) Orphan nuclear receptor NR4A3 (Nuclear hormone receptor|
           NOR-1) (Neuron-derived orphan receptor 1)
           (Mitogen-induced nuclear orphan receptor)
          Length = 626

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 17/41 (41%), Positives = 17/41 (41%)
 Frame = -1

Query: 136 HVLEPHPHKPEPQPARLVDGGELGGRGVVDALLPLPXGGAA 14
           H     PH P P PA    G  LG      A L LP G AA
Sbjct: 192 HFKPSPPHPPAPSPA---GGHHLGYDPTAAAALSLPLGAAA 229

>CO8B_HUMAN (P07358) Complement component C8 beta chain precursor (Complement|
           component 8 beta subunit)
          Length = 591

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +1

Query: 289 FLVVPTELHEKSCSFSNMGDESC--NHPLRS 375
           +L+ P++ H + C+FS+   E C  N P RS
Sbjct: 88  YLLQPSQFHGEPCNFSDKEVEDCVTNRPCRS 118


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,821,117
Number of Sequences: 219361
Number of extensions: 1014043
Number of successful extensions: 3352
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3349
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)