>TEGU_EBV (P03186) Large tegument protein|
          Length = 3149

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 25/68 (36%), Positives = 35/68 (51%)
 Frame = +3

Query: 132  LTYLDKLKTHSDDLIKQLKFLNPATQQKEAQRLALEAGMYKKATLENAKKFQHFAPNQFS 311
            L+YL KLK +++D ++Q          KE Q   LEA  +K AT E  + F   APN+  
Sbjct: 1348 LSYLQKLKNNNNDQLRQ----------KEVQAWRLEAEGFKPATEEQLEAFLDTAPNKEL 1397

Query: 312  KWLKENKI 335
            K   E K+
Sbjct: 1398 KRQYEKKL 1405

>LRP_CAEEL (Q04833) Low-density lipoprotein receptor-related protein precursor|
           (LRP)
          Length = 4753

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = -2

Query: 155 LELVKVGETGVVTPDELER 99
           LE+VK+GETG+V PDEL R
Sbjct: 821 LEVVKIGETGLVHPDELVR 839

>DNL4_ARATH (Q9LL84) DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV)|
            (Polydeoxyribonucleotide synthase [ATP] 4)
          Length = 1219

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +3

Query: 81   TKAIGISLQFIRSYNTRLTYLDKLKTHSDDLIKQLKFLNPATQQKEAQRLALEAGMYKKA 260
            T A+  +LQ  R+  T +   +KL+ H D L   L  + P   QK  +      G Y+KA
Sbjct: 1106 TVAVEEALQDSRNAKTEMDMKEKLQIHEDPLQAMLMKMFPIPSQKTTETSNRTTGEYRKA 1165

Query: 261  TL 266
             +
Sbjct: 1166 NV 1167

>Y343_METJA (Q57789) Hypothetical protein MJ0343|
          Length = 849

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 19/72 (26%), Positives = 38/72 (52%)
 Frame = +3

Query: 24  EAEKDATKQDIGKDVYDYCTKAIGISLQFIRSYNTRLTYLDKLKTHSDDLIKQLKFLNPA 203
           E E DA+K +I    +DY    +   L+ ++  NT++     +KT++D ++KQ+  +   
Sbjct: 74  EIEADASKMNIN---FDYDLSKLKSELEQLK--NTKID----IKTNTDQILKQINKIKSE 124

Query: 204 TQQKEAQRLALE 239
             +K+  R  +E
Sbjct: 125 LSEKQTIRAKVE 136

>DPO3A_BUCAP (Q8K9S3) DNA polymerase III alpha subunit (EC 2.7.7.7)|
          Length = 1161

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 20/120 (16%)
 Frame = +3

Query: 51  DIGKDVYDYCTKAIGISLQFIRSYNTRLTYLDKLKTHSDDLIKQLK-------------- 188
           +IGK +    T  I   L F   Y +   YL+ ++T+ ++  K L               
Sbjct: 139 EIGKTLLRGQTSLISDCLHFYEKYFSGFYYLELIRTYRENEEKYLSLAVDLSYSQNIPVV 198

Query: 189 ------FLNPATQQKEAQRLALEAGMYKKATLENAKKFQHFAPNQFSKWLKENKIMFEDL 350
                 FLN    +    R+A+  G+     L+ +K   +++ +QF K  KE   +F D+
Sbjct: 199 ATNDVCFLNKEDFKIHKIRIAINEGV----RLKESKIQNNYSKHQFLKTEKEMCFLFSDI 254

>EX5B_BUCBP (Q89AB3) Exodeoxyribonuclease V beta chain (EC 3.1.11.5)|
          Length = 1180

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 19/53 (35%), Positives = 31/53 (58%)
 Frame = +3

Query: 114  RSYNTRLTYLDKLKTHSDDLIKQLKFLNPATQQKEAQRLALEAGMYKKATLEN 272
            ++YN RL+ LD     S + IK+LKFL P  ++  A +L      ++ ++LEN
Sbjct: 1012 KNYNLRLSKLD-----SKNYIKELKFLLPIKKKLTALKLNNIFQTHQCSSLEN 1059

>BRO1_CANAL (Q5AJC1) Vacuolar protein-sorting protein BRO1 (BRO|
           domain-containing protein 1)
          Length = 945

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = +3

Query: 111 IRSYNTRLTYLDKLKTHSDDLIKQLKF-LNPATQQKEAQRLALEAGMYKKATLENAKKFQ 287
           ++ +N     LDKL T+   +I+QLK   N      + + L  E     +  +  ++K  
Sbjct: 673 LKKFNPFTNELDKLITNEKSIIEQLKSRWNQLISNPQIKNLQTETNSKNRLIISQSEKID 732

Query: 288 HFAPNQFSKWLK 323
            F    +  WLK
Sbjct: 733 QF----YGNWLK 740

>TTK_HUMAN (P33981) Dual specificity protein kinase TTK (EC 2.7.12.1)|
           (Phosphotyrosine picked threonine-protein kinase) (PYT)
          Length = 841

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 105 QFIRSYNTRLTYLDKLKTHSDDLIK 179
           Q + SY   + YL+KL+ HSD +I+
Sbjct: 547 QTLDSYRNEIAYLNKLQQHSDKIIR 571

>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 940

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 21/136 (15%)
 Frame = +3

Query: 6   DMIAQTEAEKDATKQDIGKDV--------YDYCTKAIGISLQFIRSYNTRLTYLDKLKTH 161
           D I+Q  A   +  +D+  DV        +D C KAI I +  + S N     ++ +  H
Sbjct: 299 DRISQLAARDKSILEDLITDVIPFLSSSDFDVCEKAISIIMGLVSSRN-----VEDILNH 353

Query: 162 SDDLIKQLKFLNPATQQKEAQRLALEAGMYKKA-------------TLENAKKFQHFAPN 302
                K+L   N  T++ + +R AL   ++  A              L +   FQ  + +
Sbjct: 354 FQ---KELTKSNGETEKDDGRRRALTKAIHSCAINFPHTAATAIQYLLSHISDFQSKSAS 410

Query: 303 QFSKWLKENKIMFEDL 350
               ++KE    F DL
Sbjct: 411 SVLSFIKEVMEKFPDL 426

>NETR_PONPY (Q5G269) Neurotrypsin precursor (EC 3.4.21.-)|
          Length = 877

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 77  LHQGHRNISPIHPELQHPSHLP*QAQDPQ**SHQAAKVPQSSHPTEGGPAPCP 235
           LH  HR+     P LQ+P +LP Q + P+  +     +P+   P    PA  P
Sbjct: 29  LHHRHRHRHSPPPGLQYPYYLPTQQRPPR--TRPPPPLPRFPRPPRALPAQRP 79

>EAF5_ASHGO (Q757R4) Chromatin modification-related protein EAF5|
          Length = 221

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +3

Query: 129 RLTYLDKLKTHSDDLIKQLKFLNP---ATQQKEAQRLALEA--GMYKKATLENAKKFQHF 293
           R T LD ++   D L+K +K L     A +  +  ++  E   GMY+   L   + FQHF
Sbjct: 84  RDTLLDVVRECQDTLVKDVKQLEQQYQAIKSHDDMKIRRERIMGMYRDTILAKLQSFQHF 143

>Y504_BORBU (O51457) UPF0144 protein BB0504|
          Length = 510

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
 Frame = +3

Query: 3   RDMIAQTEAEKDATKQDIGKDVYDYCTKAIGISLQFIRSYNT---RLTYLDKLKTHSDDL 173
           R +IA  +++    K    +D+ D   + + +  + ++   T   R++ LDK ++  D  
Sbjct: 51  RQIIANAKSQMLKEKNQQDRDIRDRKNEIVNLEKRLLQREETLDKRISALDKQQSRVDFK 110

Query: 174 IKQLKFLNPATQQKEA---QRLALEAGMYKKATLENAKK 281
           IK+ +      ++KEA   +RL   +G+    T E+A+K
Sbjct: 111 IKEFEQKEKVIREKEADLVKRLENISGL----TREDARK 145

>TMF1_HUMAN (P82094) TATA element modulatory factor (TMF)|
          Length = 1093

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +3

Query: 156 THSDDLIKQLKFLNPATQQKEAQRLALEAGMYKKATLENA 275
           +  +D+ K ++FLN   +++EAQ L+L     +KA LE A
Sbjct: 442 SEKEDVCKTVEFLNEKLEKREAQLLSLSK---EKALLEEA 478

>IAA18_ORYSA (Q5W670) Auxin-responsive protein IAA18 (Indoleacetic acid-induced|
           protein 18)
          Length = 327

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 255 SYTCQPQGQGAGPPSVGW 202
           +++  PQG+GA PP VGW
Sbjct: 154 AHSSNPQGRGAIPPVVGW 171

>FUMC_RICPR (Q9ZCQ4) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)|
          Length = 461

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +3

Query: 147 KLKTHSDDLIKQLKFLNPATQQKEAQRLALEAGMYKKATLENAKKFQHFAPNQFSKWLKE 326
           ++ T  D  +  +  LNP      A ++A EA  Y     E AKK    +  +F K +  
Sbjct: 397 RINTLRDKSLMLVTVLNPHIGYDNAAKIAKEAHKYGITLKEAAKKLNFLSEEEFDKIVVP 456

Query: 327 NKIM 338
            K++
Sbjct: 457 EKMI 460

>SRB1_CAEEL (Q95ZY0) Serpentine receptor class beta-1 (Protein srb-1)|
          Length = 341

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = -3

Query: 268 SSVAFLYMPASRARRWASFCWV---AGLRNFSC 179
           S ++F+ +PA+ A+ + S+CW+   A L N  C
Sbjct: 169 SFISFILIPATTAQTFNSYCWILLYAELGNLLC 201

>CWLO_BACLD (Q65NQ9) Peptidoglycan DL-endopeptidase cwlO precursor (EC 3.4.-.-)|
           (D-gamma-glutamyl-meso-diaminopimelyl DL-endopeptidase)
          Length = 452

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
 Frame = +3

Query: 21  TEAEKDATKQDIGKDVYDYCTKAIGISLQFIRSYNTRLTYLDK----LKTHSDDLIKQLK 188
           T A   +T  D  KD+ D   K      + +   NT+L  + K    LKT   DL KQLK
Sbjct: 151 TRATAVSTIVDADKDLLDEQEKDKNKLEKAMSDLNTKLDEIQKTLADLKTLKSDLDKQLK 210

Query: 189 FLNPATQQKEAQRLALEA 242
                ++Q + ++ A E+
Sbjct: 211 EQANLSKQLQTKQAAAES 228

>BOS1_DEBHA (Q6BVM4) Vesicular transport protein BOS1|
          Length = 229

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
 Frame = +3

Query: 6   DMIAQTEAEKDATKQD-----IGKDVYDYCTKAIGISLQFIRSYNTRLTYLDKLKTHSDD 170
           D++AQ + ++   K +       +D+ D+ +K   +  Q  R    + T   +L      
Sbjct: 53  DLVAQNKKDESNAKHEARLAKFNQDLQDFTSKFDSLKKQ--RDQALQETNKQELLGRRHT 110

Query: 171 LIKQLKFLNP----ATQQKEAQRLALEAGMYKKAT 263
             +Q    NP     TQQ++ Q+++ + G+YK+ T
Sbjct: 111 TQRQQYGENPYDTGPTQQQQQQQMSYQEGLYKEKT 145

>IRF8_MOUSE (P23611) Interferon regulatory factor 8 (IRF-8) (Interferon|
           consensus sequence-binding protein) (ICSBP)
          Length = 424

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -2

Query: 284 KLFGILQRGFLIHASLKG 231
           KLFG L+RG L+H++ KG
Sbjct: 267 KLFGHLERGVLLHSNRKG 284

>Y1076_METJA (Q58476) Hypothetical ATP-binding protein MJ1076|
          Length = 337

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 8/124 (6%)
 Frame = +3

Query: 6   DMIAQTEAEKDATKQDIGKDVYDYCTKAIGISLQFIRSYNTRLTYLDKLKTHSDDLIKQ- 182
           D + + + +K   ++   K   DYC   + +  +  +  N +     KL    ++ IK+ 
Sbjct: 199 DWLKKDDIKKILKEEGFNKKEIDYCLNYLSLPYEISQLINNK-----KLGLSVEETIKRW 253

Query: 183 -------LKFLNPATQQKEAQRLALEAGMYKKATLENAKKFQHFAPNQFSKWLKENKIMF 341
                  +K+L   +   E + +      +K     N KK       ++ K+L EN+I+F
Sbjct: 254 INIEADGIKYLIDTSDLNE-EEIYKVLSKFKDKIKINYKKDVKKEEMKYIKFLIENEILF 312

Query: 342 EDLV 353
            D++
Sbjct: 313 YDVI 316

>MFPA_BRANA (O49809) Glyoxysomal fatty acid beta-oxidation multifunctional|
           protein MFP-a [Includes: Enoyl-CoA hydratase (EC
           4.2.1.17); 3-2-trans-enoyl-CoA isomerase (EC 5.3.3.8);
           3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3);
           3-hydroxyacyl-CoA dehydrogenase
          Length = 725

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +3

Query: 6   DMIAQTEAEKDATKQDIGKDVYDYCTKAIGISLQFIRSYNTRLTYLDKL--KTHSDDLIK 179
           DM+ +   E  + KQ I  D+  YC +        I + NT    L+K+  +T S D I 
Sbjct: 393 DMVIEAVIENISLKQQIFADLEKYCPQ------HCILASNTSTIDLNKIGERTKSQDRII 446

Query: 180 QLKFLNPA 203
              F +PA
Sbjct: 447 GAHFFSPA 454


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,538,559
Number of Sequences: 219361
Number of extensions: 913286
Number of successful extensions: 3216
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3215
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)