ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal25g24 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X82937.1|HVRNAJIP H.vulgare mRNA for jasmonate induced protein Length = 1334 Score = 694 bits (350), Expect = 0.0 Identities = 353/354 (99%) Strand = Plus / Plus Query: 1 cacgggacatgatagcacaaaccgaggctgagaaggatgccaccaagcaagatattggca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 253 cacgggacatgatagcacaaaccgaggctgagaaggatgccaccaagcaagatattggca 312 Query: 61 aggatgtctatgactactgcaccaaggccatcggaatatctctccaattcatccggagtt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 313 aggatgtctatgactactgcaccaaggccatcggaatatctctccaattcatccggagtt 372 Query: 121 acaacacccgtctcacctaccttgacaagctcaagacccacagtgatgatctcatcaagc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 373 acaacacccgtctcacctaccttgacaagctcaagacccacagtgatgatctcatcaagc 432 Query: 181 agctaaagttcctcaatccagccacccaacagaaggaggcccagcgccttgcccttgagg 240 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 433 agctaaagttcctcaatctagccacccaacagaaggaggcccagcgccttgcccttgagg 492 Query: 241 ctggcatgtataagaaagccacgctggagaatgccaaaaagtttcaacactttgcaccaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 493 ctggcatgtataagaaagccacgctggagaatgccaaaaagtttcaacactttgcaccaa 552 Query: 301 atcaattctcaaaatggctcaaggaaaacaaaatcatgtttgaggatcttgtgc 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 553 atcaattctcaaaatggctcaaggaaaacaaaatcatgtttgaggatcttgtgc 606
>gb|AC107952.5| Homo sapiens chromosome 8, clone RP11-140I16, complete sequence Length = 142102 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Plus Query: 320 caaggaaaacaaaatcatgtttgagg 345 ||||||||||||| |||||||||||| Sbjct: 67526 caaggaaaacaaattcatgtttgagg 67551
>gb|U41016.1| Caenorhabditis elegans cosmid R11G1, complete sequence Length = 34496 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 272 tgccaaaaagtttcaacacttt 293 |||||||||||||||||||||| Sbjct: 7678 tgccaaaaagtttcaacacttt 7657
>emb|BX649209.1| Mycobacterium ulcerans plasmid pMUM001, complete plasmid genome Length = 174155 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 221 ccagcgccttgcccttgaggctggc 245 ||||||||| ||||||||||||||| Sbjct: 26729 ccagcgcctggcccttgaggctggc 26753 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 221 ccagcgccttgcccttgaggctggc 245 ||||||||| ||||||||||||||| Sbjct: 20925 ccagcgcctggcccttgaggctggc 20901
>gb|AC110556.15| Mus musculus chromosome 5, clone RP23-250G21, complete sequence Length = 214445 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 214 aggaggcccagcgccttgcccttga 238 ||||||||||||||||||| ||||| Sbjct: 180500 aggaggcccagcgccttgcacttga 180476
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 221 ccagcgccttgcccttgaggc 241 ||||||||||||||||||||| Sbjct: 1543666 ccagcgccttgcccttgaggc 1543646
>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence Length = 153766 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 gctcaagacccacagtgatg 168 |||||||||||||||||||| Sbjct: 115381 gctcaagacccacagtgatg 115400
>gb|AE017352.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 12, complete sequence Length = 906719 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 cgccttgcccttgaggctgg 244 |||||||||||||||||||| Sbjct: 842251 cgccttgcccttgaggctgg 842270
>ref|XM_419142.1| PREDICTED: Gallus gallus similar to erythrocyte protein band 4.1-like 3 (LOC421055), mRNA Length = 6756 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 ctggagaatgccaaaaagtt 283 |||||||||||||||||||| Sbjct: 3148 ctggagaatgccaaaaagtt 3167 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 ctggagaatgccaaaaagtt 283 |||||||||||||||||||| Sbjct: 2755 ctggagaatgccaaaaagtt 2774
>ref|XM_457812.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0C03498g) partial mRNA Length = 3774 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 accaagcaagatattggcaa 61 |||||||||||||||||||| Sbjct: 1747 accaagcaagatattggcaa 1766
>gb|AC140554.3| Mus musculus BAC clone RP23-151C18 from chromosome 18, complete sequence Length = 215716 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 ggctggcatgtataagaaag 258 |||||||||||||||||||| Sbjct: 47145 ggctggcatgtataagaaag 47126
>ref|XM_568184.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNL06610) partial mRNA Length = 3711 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 cgccttgcccttgaggctgg 244 |||||||||||||||||||| Sbjct: 625 cgccttgcccttgaggctgg 606
>gb|AC130204.4| Mus musculus BAC clone RP24-427M16 from chromosome 18, complete sequence Length = 167394 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 ggctggcatgtataagaaag 258 |||||||||||||||||||| Sbjct: 105655 ggctggcatgtataagaaag 105636
>gb|AC069280.10| Homo sapiens BAC clone RP11-3P22 from 7, complete sequence Length = 167563 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 caccaaatcaattctcaaaa 314 |||||||||||||||||||| Sbjct: 134949 caccaaatcaattctcaaaa 134968
>emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS767 of Debaryomyces hansenii Length = 1592360 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 accaagcaagatattggcaa 61 |||||||||||||||||||| Sbjct: 281073 accaagcaagatattggcaa 281092
>emb|AL645823.12| Mouse DNA sequence from clone RP23-288I22 on chromosome 11 Contains the Gabra6 gene for subunit alpha 6 gamma-aminobutyric acid (GABA-A) receptor, complete sequence Length = 132024 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 caagatattggcaaggatgt 67 |||||||||||||||||||| Sbjct: 120263 caagatattggcaaggatgt 120244
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 gcccagcgccttgcccttga 238 |||||||||||||||||||| Sbjct: 3121255 gcccagcgccttgcccttga 3121236
>gb|AC113380.2| Homo sapiens chromosome 5 clone RP11-304B20, complete sequence Length = 143534 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 299 aaatcaattctcaaaatggctcaa 322 ||||||||| |||||||||||||| Sbjct: 63704 aaatcaattatcaaaatggctcaa 63681
>gb|AC090341.9| Homo sapiens chromosome 8, clone RP11-734H6, complete sequence Length = 186540 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 ctcaaggaaaacaaaatcatgttt 341 ||||||||||| |||||||||||| Sbjct: 149408 ctcaaggaaaataaaatcatgttt 149431
>gb|AC021205.6| Homo sapiens BAC clone RP11-170N16 from 4, complete sequence Length = 178917 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 ggaatatctctccaattcat 112 |||||||||||||||||||| Sbjct: 97894 ggaatatctctccaattcat 97913
>gb|AC022555.8| Homo sapiens chromosome 8, clone RP11-163N6, complete sequence Length = 173788 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 ctcaaggaaaacaaaatcatgttt 341 ||||||||||| |||||||||||| Sbjct: 105787 ctcaaggaaaataaaatcatgttt 105810
>gb|AF170801.5| Homo sapiens chromosome 8 clone CTA-392B3 map p23, complete sequence Length = 131992 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 gctcaagacccacagtgatg 168 |||||||||||||||||||| Sbjct: 29823 gctcaagacccacagtgatg 29842
>gb|AC157217.2| Pan troglodytes BAC clone CH251-305B5 from chromosome unknown, complete sequence Length = 159245 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ggaatatctctccaattcat 112 |||||||||||||||||||| Sbjct: 67066 ggaatatctctccaattcat 67047
>gb|AC103776.3| Homo sapiens chromosome 8, clone RP11-42O14, complete sequence Length = 165995 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 gctcaagacccacagtgatg 168 |||||||||||||||||||| Sbjct: 32794 gctcaagacccacagtgatg 32813
>gb|AC019257.3| Homo sapiens chromosome 8, clone RP11-439C15, complete sequence Length = 220201 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 gctcaagacccacagtgatg 168 |||||||||||||||||||| Sbjct: 73237 gctcaagacccacagtgatg 73218
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 gcccagcgccttgcccttga 238 |||||||||||||||||||| Sbjct: 3128563 gcccagcgccttgcccttga 3128544
>emb|AJ493186.1|ALO493186 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone WA3 Length = 795 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 aggaggcccagcgccttgcc 233 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493185.1|ALO493185 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone SE4 Length = 795 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 aggaggcccagcgccttgcc 233 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493184.1|ALO493184 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone SE1 Length = 795 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 aggaggcccagcgccttgcc 233 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493182.1|ALO493182 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone RS1B Length = 792 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 aggaggcccagcgccttgcc 233 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493181.1|ALO493181 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone Pohnpei 1 Length = 795 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 aggaggcccagcgccttgcc 233 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493180.1|ALO493180 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone Palau16 Length = 795 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 aggaggcccagcgccttgcc 233 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493179.1|ALO493179 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone Palau5 Length = 795 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 aggaggcccagcgccttgcc 233 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493178.1|ALO493178 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone Moorea1 Length = 795 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 aggaggcccagcgccttgcc 233 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493177.1|ALO493177 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone CLJ-3 Length = 795 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 aggaggcccagcgccttgcc 233 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493176.1|ALO493176 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone CH62, isoform b Length = 794 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 aggaggcccagcgccttgcc 233 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493175.1|ALO493175 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone CH62, isoform a Length = 795 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 aggaggcccagcgccttgcc 233 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493174.1|ALO493174 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone CH49, isoform a Length = 795 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 aggaggcccagcgccttgcc 233 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493173.1|ALO493173 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone CH49, isoform b Length = 794 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 aggaggcccagcgccttgcc 233 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493172.1|ALO493172 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone CH48 Length = 795 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 aggaggcccagcgccttgcc 233 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493171.1|ALO493171 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone 99-050 Length = 795 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 aggaggcccagcgccttgcc 233 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493170.1|ALO493170 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone 99-047 Length = 795 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 aggaggcccagcgccttgcc 233 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493169.1|ALO493169 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone 99-046, isoform b Length = 795 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 aggaggcccagcgccttgcc 233 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AJ493168.1|ALO493168 Alpheus lottini partial myHC gene for myosin heavy chain, exons 1-2, clone 99-046, isoform a Length = 795 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 aggaggcccagcgccttgcc 233 |||||||||||||||||||| Sbjct: 105 aggaggcccagcgccttgcc 124
>emb|AL806530.6| Mouse DNA sequence from clone RP23-152B24 on chromosome 4, complete sequence Length = 85718 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 aggaaaacaaaatcatgttt 341 |||||||||||||||||||| Sbjct: 65207 aggaaaacaaaatcatgttt 65188 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,517,683 Number of Sequences: 3902068 Number of extensions: 3517683 Number of successful extensions: 73126 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72964 Number of HSP's gapped (non-prelim): 162 length of query: 354 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 332 effective length of database: 17,147,199,772 effective search space: 5692870324304 effective search space used: 5692870324304 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
