ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal25f19 |
|---|---|
| Clone Library Name | barley_pub |
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 198 bits (504), Expect = 2e-51 Identities = 100/114 (87%), Positives = 101/114 (88%) Frame = +2 Query: 20 KGLAYDISXXXXXXXXXGRASWDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGG 199 KGLAYDIS G+ DSLFQAPTG GTHEAVLSSYEYVSQGLRKYDFDNTMGG Sbjct: 62 KGLAYDISDDQQDITR-GKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGG 120 Query: 200 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGI 361 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGI Sbjct: 121 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGI 174
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 195 bits (496), Expect = 2e-50 Identities = 96/114 (84%), Positives = 101/114 (88%) Frame = +2 Query: 20 KGLAYDISXXXXXXXXXGRASWDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGG 199 KGLAYDIS G+ DSLFQAPTGDGTHEAVLSSYEY+SQGLR YDFDNTMGG Sbjct: 63 KGLAYDISDDQQDITR-GKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGG 121 Query: 200 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGI 361 FYIAP+FMDKLVVH+SKNFMTLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGI Sbjct: 122 FYIAPSFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 175
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 191 bits (485), Expect = 4e-49 Identities = 93/114 (81%), Positives = 99/114 (86%) Frame = +2 Query: 20 KGLAYDISXXXXXXXXXGRASWDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGG 199 KGLAYDIS G+ DSLFQAP GDGTHEA+LSSYEY+SQGLRKYDFDNTM G Sbjct: 60 KGLAYDISDDQQDITR-GKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDG 118 Query: 200 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGI 361 YIAPAFMDKL+VHL+KNFMTLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGI Sbjct: 119 LYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 172
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 176 bits (446), Expect = 1e-44 Identities = 87/114 (76%), Positives = 94/114 (82%) Frame = +2 Query: 20 KGLAYDISXXXXXXXXXGRASWDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGG 199 KGLAYDIS G+ D+LFQAP GDGTH AVLSSY+Y+SQG + Y+FDN M G Sbjct: 68 KGLAYDISDDQQDITR-GKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDG 126 Query: 200 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGI 361 FYIA FMDKLVVHLSKNFMTLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGI Sbjct: 127 FYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 180
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 174 bits (440), Expect = 6e-44 Identities = 85/114 (74%), Positives = 94/114 (82%) Frame = +2 Query: 20 KGLAYDISXXXXXXXXXGRASWDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGG 199 +GLAYD S G+ DS+FQAP G GTH AVLSSYEYVSQGLR+Y+ DN M G Sbjct: 72 RGLAYDTSDDQQDITR-GKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDG 130 Query: 200 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGI 361 FYIAPAFMDKLVVH++KNF+TLPNIK+PLILGIWGGKGQGKSFQCELV AKMGI Sbjct: 131 FYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGI 184
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 172 bits (437), Expect = 1e-43 Identities = 84/114 (73%), Positives = 95/114 (83%) Frame = +2 Query: 20 KGLAYDISXXXXXXXXXGRASWDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGG 199 KGLAYDIS G+ D+LFQAP GTH AV+SSY+Y+SQGLR+Y+ DN M G Sbjct: 72 KGLAYDISDDQQDITR-GKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDG 130 Query: 200 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGI 361 FYIAPAFMDKLVVH++KNF++LPNIKIPLILGIWGGKGQGKSFQCELVFAKMGI Sbjct: 131 FYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGI 184
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 172 bits (437), Expect = 1e-43 Identities = 84/114 (73%), Positives = 95/114 (83%) Frame = +2 Query: 20 KGLAYDISXXXXXXXXXGRASWDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGG 199 KGLAYDIS G+ D+LFQAP GTH AV+SSY+Y+SQGLR+Y+ DN M G Sbjct: 72 KGLAYDISDDQQDITR-GKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDG 130 Query: 200 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGI 361 FYIAPAFMDKLVVH++KNF++LPNIKIPLILGIWGGKGQGKSFQCELVFAKMGI Sbjct: 131 FYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGI 184
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 171 bits (433), Expect = 4e-43 Identities = 82/114 (71%), Positives = 94/114 (82%) Frame = +2 Query: 20 KGLAYDISXXXXXXXXXGRASWDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGG 199 KGLA+D S G+ DSLFQAP G GTH A++SSYEY+S GLR+Y+FDN M G Sbjct: 72 KGLAFDTSDDQQDITR-GKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDG 130 Query: 200 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGI 361 +YIAPAFMDKLVVH++KNFMTLPN+K+PLILGIWGGKGQGKSFQCELVFAKM I Sbjct: 131 YYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCELVFAKMRI 184
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 170 bits (431), Expect = 7e-43 Identities = 82/114 (71%), Positives = 92/114 (80%) Frame = +2 Query: 20 KGLAYDISXXXXXXXXXGRASWDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGG 199 KGL D S G+ DSLFQAPTG GTH AVL SYEYVSQGLR+Y+ DNT+ G Sbjct: 76 KGLVQDFSDDQQDIAR-GKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDG 134 Query: 200 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGI 361 FYIAP+FMDKLVVH++KNF+ LPNIK+PLILG+WGGKGQGKSFQCELVF KMGI Sbjct: 135 FYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGI 188
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 169 bits (429), Expect = 1e-42 Identities = 83/114 (72%), Positives = 91/114 (79%) Frame = +2 Query: 20 KGLAYDISXXXXXXXXXGRASWDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGG 199 KGL D S G+ DSLFQAPTG GTH AVL SYEYVSQGLR+Y+ DN + G Sbjct: 76 KGLVQDFSDDQQDITR-GKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLDNKLDG 134 Query: 200 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGI 361 FYIAPAFMDKLVVH++KNF+ LPNIK+PLILGIWGGKGQGKSFQCELVF KMGI Sbjct: 135 FYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGI 188
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 166 bits (421), Expect = 1e-41 Identities = 80/114 (70%), Positives = 94/114 (82%) Frame = +2 Query: 20 KGLAYDISXXXXXXXXXGRASWDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGG 199 +GLAYD+S G+ DSLFQAP GTH AV+SS++Y+S GLR+Y+FDN G Sbjct: 76 RGLAYDVSDDQQDITR-GKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDG 134 Query: 200 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGI 361 FYIAPAF+DKLVVH++KNFMTLPNIK+PLILG+WGGKGQGKSFQCELVFAKMGI Sbjct: 135 FYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGI 188
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 166 bits (421), Expect = 1e-41 Identities = 79/114 (69%), Positives = 91/114 (79%) Frame = +2 Query: 20 KGLAYDISXXXXXXXXXGRASWDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGG 199 KGL YD + G+ DSLFQAPTG GTH A+++SYEYVSQ L+ Y DN + G Sbjct: 71 KGL-YDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDG 129 Query: 200 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGI 361 FYIAPAFMDKLVVH++KNF+TLPNIK+PLILG+WGGKGQGKSFQCELVF KMGI Sbjct: 130 FYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGI 183
>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 413 Score = 166 bits (421), Expect = 1e-41 Identities = 80/114 (70%), Positives = 90/114 (78%) Frame = +2 Query: 20 KGLAYDISXXXXXXXXXGRASWDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGG 199 +GLA+D S G+ D LFQAP G GTH AVLSSYEY+S GLR Y +DN + G Sbjct: 69 RGLAFDTSDDQQDITR-GKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDG 127 Query: 200 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGI 361 FYIAPAFMDKL VH+ KNF+TLPNIK+PLILG+WGGKGQGKSFQCELVFAKMGI Sbjct: 128 FYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGI 181
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 160 bits (404), Expect = 9e-40 Identities = 82/114 (71%), Positives = 90/114 (78%) Frame = +2 Query: 20 KGLAYDISXXXXXXXXXGRASWDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGG 199 KGLAYDIS G+ D LFQAP GTH AV+SSYEY+S GLR+ DN G Sbjct: 76 KGLAYDISDDQQDITR-GKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLRQ--LDNIKDG 132 Query: 200 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGI 361 FYIAPAF+DKLVVH++KNFMTLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGI Sbjct: 133 FYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI 186
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 159 bits (403), Expect = 1e-39 Identities = 74/97 (76%), Positives = 83/97 (85%) Frame = +2 Query: 71 GRASWDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSK 250 G+ DSLFQAP GTH + SS+EY SQGLRKYD DN +G FYIAPAFMDKLVVH++K Sbjct: 86 GKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITK 145 Query: 251 NFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGI 361 NF+ LPNIKIPLILG+WGGKGQGKSFQCELVFAK+GI Sbjct: 146 NFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGI 182
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 123 bits (308), Expect = 1e-28 Identities = 60/98 (61%), Positives = 73/98 (74%), Gaps = 1/98 (1%) Frame = +2 Query: 71 GRASWDSLFQAPTG-DGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLS 247 GR D LFQ G GTH AVLSS EY+SQ + F+N GFYI+PAF+DK+ +H++ Sbjct: 62 GREMVDDLFQGGFGAGGTHNAVLSSQEYLSQS--RASFNNIEDGFYISPAFLDKMTIHIA 119 Query: 248 KNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGI 361 KNFM LP IK+PLILGIWGGKGQGK+FQC L + K+GI Sbjct: 120 KNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGI 157
>RCA_ANASC (Q06721) Ribulose bisphosphate carboxylase/oxygenase activase| (RuBisCO activase) (RA) Length = 415 Score = 85.5 bits (210), Expect = 3e-17 Identities = 35/55 (63%), Positives = 47/55 (85%) Frame = +2 Query: 200 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGIK 364 +YIAP F+DKL VH++KNF+ LP +++PLILGI G KG+GK+FQCEL F KMG++ Sbjct: 3 YYIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVE 57
>RCA_ANASP (P58555) Ribulose bisphosphate carboxylase/oxygenase activase| (RuBisCO activase) (RA) Length = 414 Score = 85.1 bits (209), Expect = 4e-17 Identities = 35/55 (63%), Positives = 47/55 (85%) Frame = +2 Query: 200 FYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGIK 364 +YIAP F+DKL VH++KNF+ +P +++PLILGI G KG+GK+FQCEL F KMGI+ Sbjct: 3 YYIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIE 57
>G6PI_PSEHT (Q3IKH4) Glucose-6-phosphate isomerase (EC 5.3.1.9) (GPI)| (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) Length = 548 Score = 32.0 bits (71), Expect = 0.37 Identities = 19/62 (30%), Positives = 29/62 (46%) Frame = +2 Query: 149 YVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSF 328 Y SQ + YD M Y+ M+ H++ T+P +P+I G+ G GQ + Sbjct: 328 YTSQAILPYDQALHMLPAYLQQGEMESNGKHVNFAGETVPYTTVPIIWGMTGINGQHAFY 387 Query: 329 QC 334 QC Sbjct: 388 QC 389
>POLG_SVDVU (P13900) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A) (P2-3B); Core protein P2B (P2-5B); Core protein P2C (P2-X); C Length = 2184 Score = 30.8 bits (68), Expect = 0.82 Identities = 13/56 (23%), Positives = 29/56 (51%) Frame = -3 Query: 387 K*MNVNSYLMPILANTSSHWNDFP*PLPPQIPKMSGILMLGRVMKFLERWTTSLSM 220 K M++ +Y +P+ +N ++ F PL P + +LG ++ + W+ S+ + Sbjct: 390 KVMSIEAYQIPVQSNPTNGSQVFGFPLTPGANSVLNRTLLGEILNYYAHWSGSIKL 445
>POLG_SVDVH (P16604) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A) (P2-3B); Core protein P2B (P2-5B); Core protein P2C (P2-X); C Length = 2184 Score = 30.8 bits (68), Expect = 0.82 Identities = 13/56 (23%), Positives = 29/56 (51%) Frame = -3 Query: 387 K*MNVNSYLMPILANTSSHWNDFP*PLPPQIPKMSGILMLGRVMKFLERWTTSLSM 220 K M++ +Y +P+ +N ++ F PL P + +LG ++ + W+ S+ + Sbjct: 390 KVMSIEAYQIPVQSNPTNGSQVFGFPLTPGANSVLNRTLLGEILNYYAHWSGSIKL 445
>COAE_CHLTE (Q8KD46) Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A| kinase) Length = 208 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/28 (46%), Positives = 21/28 (75%) Frame = +2 Query: 275 KIPLILGIWGGKGQGKSFQCELVFAKMG 358 ++PL++G+ GG G GKS C ++ A+MG Sbjct: 4 RLPLLVGVTGGIGSGKSTVCAML-AEMG 30
>VPG_BLRV (P19127) Putative genome-linked protein precursor (VPG) (16 kDa| protein) (ORF 2) Length = 142 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = -3 Query: 360 MPILANTSSHWNDFP*PL-PPQIPKMSGILMLGRVMKFLERWTTSLS 223 M I++ TSS W P PL PPQ+P + ++ R + + T S S Sbjct: 49 MSIISRTSS-WRTSPRPLPPPQVPSLMNSILTSRTQQSSPKLTNSAS 94
>UVRB_XYLFT (Q87AT6) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 669 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Frame = -2 Query: 220 ESRSDVEASHGVVEVVLPQALADVLVGAEDGL-VGAVARGRLEERVP 83 + + + A +G+V + + ++D+L GA DG+ V + +GR + VP Sbjct: 573 QKQKEYNAENGIVPKSVVRPISDILEGARDGVEVKSKGKGRRVDEVP 619
>UVRB_XYLFA (Q9PER1) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 669 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Frame = -2 Query: 220 ESRSDVEASHGVVEVVLPQALADVLVGAEDGL-VGAVARGRLEERVP 83 + + + A +G+V + + ++D+L GA DG+ V + +GR + VP Sbjct: 573 QKQKEYNAENGIVPKSVVRPISDILEGARDGVEVKSKGKGRRVDEVP 619
>POLG_CXB3W (Q66282) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2184 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/53 (22%), Positives = 26/53 (49%) Frame = -3 Query: 378 NVNSYLMPILANTSSHWNDFP*PLPPQIPKMSGILMLGRVMKFLERWTTSLSM 220 ++ +Y +P+ +N S F PL P + +LG ++ + W+ S+ + Sbjct: 395 SMEAYQIPVRSNEGSGTQVFGFPLQPGYSSVFSRTLLGEILNYYTHWSGSIKL 447
>POLG_CXB3N (P03313) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2184 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/53 (22%), Positives = 26/53 (49%) Frame = -3 Query: 378 NVNSYLMPILANTSSHWNDFP*PLPPQIPKMSGILMLGRVMKFLERWTTSLSM 220 ++ +Y +P+ +N S F PL P + +LG ++ + W+ S+ + Sbjct: 395 SMEAYQIPVRSNEGSGTQVFGFPLQPGYSSVFSRTLLGEILNYYTHWSGSIKL 447
>CLPE_LACLC (Q9S5Z2) ATP-dependent Clp protease ATP-binding subunit clpE| Length = 748 Score = 28.9 bits (63), Expect = 3.1 Identities = 20/66 (30%), Positives = 31/66 (46%) Frame = -2 Query: 256 EVFGEMDNKLVHESRSDVEASHGVVEVVLPQALADVLVGAEDGLVGAVARGRLEERVPRC 77 E+FG ++ ++ S+ H V + L+GA G VG G+L ERV R Sbjct: 497 ELFGSSES-MIRFDMSEYMEKHSVAK----------LIGAPPGYVGYEEAGQLTERVRRN 545 Query: 76 PSLLVM 59 P L++ Sbjct: 546 PYSLIL 551
>CLPE_LACLA (Q9CI09) ATP-dependent Clp protease ATP-binding subunit clpE| Length = 748 Score = 28.9 bits (63), Expect = 3.1 Identities = 20/66 (30%), Positives = 31/66 (46%) Frame = -2 Query: 256 EVFGEMDNKLVHESRSDVEASHGVVEVVLPQALADVLVGAEDGLVGAVARGRLEERVPRC 77 E+FG ++ ++ S+ H V + L+GA G VG G+L ERV R Sbjct: 497 ELFGSSES-MIRFDMSEYMEKHSVAK----------LIGAPPGYVGYEEAGQLTERVRRN 545 Query: 76 PSLLVM 59 P L++ Sbjct: 546 PYSLIL 551
>POLG_CXB5P (Q03053) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2184 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/53 (20%), Positives = 28/53 (52%) Frame = -3 Query: 378 NVNSYLMPILANTSSHWNDFP*PLPPQIPKMSGILMLGRVMKFLERWTTSLSM 220 ++ +Y +P+ +N+++ F PL P + +LG ++ + W+ S+ + Sbjct: 393 SIEAYQIPVQSNSTNGSQVFGFPLIPGASSVLNRTLLGEILNYYTHWSGSIKL 445
>POLG_CXB1J (P08291) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2181 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = -3 Query: 378 NVN---SYLMPILANTSSHWNDFP*PLPPQIPKMSGILMLGRVMKFLERWTTSLSM 220 NVN +Y +P+ +N+ + F PL P + +LG ++ + W+ S+ + Sbjct: 392 NVNGLKAYQIPVQSNSDNRRQVFGFPLQPGANNVLNRTLLGEILNYYTHWSGSIKL 447
>EX5B_BUCBP (Q89AB3) Exodeoxyribonuclease V beta chain (EC 3.1.11.5)| Length = 1180 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Frame = +2 Query: 143 YEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKN--FMTLPNIKI 280 + Y+ Q ++ Y F N GG YI F+ + S+N F ++PNI+I Sbjct: 1127 HRYLKQHIKNYSFYNHFGGTYI--LFIRSINEIPSQNGIFYSIPNIEI 1172
>TRPC_HALVO (P18304) Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS)| Length = 251 Score = 28.5 bits (62), Expect = 4.1 Identities = 25/96 (26%), Positives = 42/96 (43%) Frame = -2 Query: 310 LASPDTQDEWDLDVGQGHEVFGEMDNKLVHESRSDVEASHGVVEVVLPQALADVLVGAED 131 L T++E + G ++ G + L +E G E + P+A DVL+ AE Sbjct: 158 LVEVHTREELTAALAAGADIVGINNRDL-----GKLEVDLGTFEELAPEAPEDVLLVAES 212 Query: 130 GLVGAVARGRLEERVPRCPSLLVMXLLVVGDIVRKT 23 G+ R+ E +LLV ++ GD+ + T Sbjct: 213 GVQTVDDARRMRE--AGADALLVGTAIMDGDVRQNT 246
>SQRD_MOUSE (Q9R112) Sulfide:quinone oxidoreductase, mitochondrial precursor| (EC 1.-.-.-) Length = 450 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Frame = +2 Query: 83 WDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMT 262 +D P G + +L+ ++Y +Q L + FD + +++ ++L K M Sbjct: 373 YDGYTSCPLVTGYNRVILAEFDYTAQPLETFPFDQS----------KERITMYLMKADM- 421 Query: 263 LPNIKIPLIL-GIWGG 307 +P + ++L G WGG Sbjct: 422 MPFLYWNMMLRGYWGG 437
>KAD1_CAEEL (Q20140) Probable adenylate kinase isoenzyme F38B2.4 (EC 2.7.4.3)| (ATP-AMP transphosphorylase) Length = 210 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +2 Query: 251 NFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGI 361 N L +P+ I GG G GK QC+ + AK G+ Sbjct: 11 NLAPLKAAGVPIFF-IVGGPGSGKGTQCDKIVAKYGL 46
>RF1_AERPE (Q9YAF1) Peptide chain release factor subunit 1 (Translation| termination factor aRF1) Length = 373 Score = 28.1 bits (61), Expect = 5.3 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 17/56 (30%) Frame = -2 Query: 268 GQGHEVFGEMDNK-----------LVHESRSDVE------ASHGVVEVVLPQALAD 152 G G V+GE D + L+HESR D+E S G +V+P++LA+ Sbjct: 296 GTGMIVYGEKDVEAALEMGAVKTLLIHESREDLEEWVEKAKSSGAQVIVVPESLAE 351
>TR150_XENLA (Q5BJ39) Thyroid hormone receptor-associated protein 3 (Thyroid| hormone receptor-associated protein complex 150 kDa component) (Trap150) Length = 951 Score = 27.7 bits (60), Expect = 6.9 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 10/58 (17%) Frame = +3 Query: 243 SPKTS*PCPTSRSHS----------SWVSGEARVKENHSSVSLCSPRWASSKNLHSST 386 SPK P P SRSHS S S +R+ NHS V S + S+K SS+ Sbjct: 129 SPKRRSPSPRSRSHSRNSDKSSSDRSRRSSSSRLSSNHSRVE--SSKRKSTKEKKSSS 184
>BIOH_ERWCT (Q6CZL9) Carboxylesterase bioH (EC 3.1.1.1) (Biotin synthesis| protein bioH) Length = 255 Score = 27.7 bits (60), Expect = 6.9 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%) Frame = -2 Query: 229 LVHESRSDVEASHGVVEVV----LPQALADVLV------GAEDGLVGAVARGRLEERVPR 80 ++ + V+ +G +E++ L Q LAD+ V GA DGLV GRL++ P Sbjct: 165 VLEQPMPSVDVLNGGLEILREADLRQPLADLTVPLLRLYGALDGLVPRKVAGRLDDEWPN 224 Query: 79 CPSLLV 62 S+++ Sbjct: 225 STSVVM 230
>TOR2A_RAT (Q6AYR4) Torsin-2A precursor (Torsin family 2 member A)| Length = 321 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/56 (33%), Positives = 27/56 (48%) Frame = +2 Query: 176 DFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELV 343 D + G ++A A LVV K F+ P PL+L + G G GKS+ L+ Sbjct: 55 DLARHLAGQHLAKA----LVVKSLKAFVQDPAPSKPLVLSLHGWTGTGKSYVSSLL 106
>TOR2A_MOUSE (Q8R1J9) Torsin-2A precursor (Torsin family 2 member A)| Length = 321 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/56 (33%), Positives = 27/56 (48%) Frame = +2 Query: 176 DFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELV 343 D + G ++A A LVV K F+ P PL+L + G G GKS+ L+ Sbjct: 55 DLAQHLAGQHLAKA----LVVKSLKAFVQDPAPSKPLVLSLHGWTGTGKSYVSSLL 106
>TOR2A_HUMAN (Q5JU69) Torsin-2A precursor (Torsin family 2 member A)| (Torsin-related protein 1) Length = 321 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/56 (33%), Positives = 27/56 (48%) Frame = +2 Query: 176 DFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELV 343 D + G ++A A LVV K F+ P PL+L + G G GKS+ L+ Sbjct: 55 DLAQHLAGQHLAKA----LVVKALKAFVRDPAPTKPLVLSLHGWTGTGKSYVSSLL 106
>GATH_SCHPO (O94509) Probable glutamyl-tRNA(Gln) amidotransferase subunit A,| mitochondrial precursor (EC 6.3.5.-) (Glu-ADT subunit A) Length = 471 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/54 (27%), Positives = 25/54 (46%) Frame = -2 Query: 289 DEWDLDVGQGHEVFGEMDNKLVHESRSDVEASHGVVEVVLPQALADVLVGAEDG 128 DE+ + V + +FG N +V +S DV S G + + VG++ G Sbjct: 110 DEFAMGVKSENNLFGRTVNPVVKDSNYDVGGSSGGAAAAIAADICYASVGSDTG 163
>TOR2X_HUMAN (Q8N2E6) Prosalusin precursor (Torsin-2A) (Torsin family 2 member| A) [Contains: Salusin-alpha; Salusin-beta] Length = 242 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/56 (33%), Positives = 27/56 (48%) Frame = +2 Query: 176 DFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELV 343 D + G ++A A LVV K F+ P PL+L + G G GKS+ L+ Sbjct: 55 DLAQHLAGQHLAKA----LVVKALKAFVRDPAPTKPLVLSLHGWTGTGKSYVSSLL 106
>KCY_MOUSE (Q9DBP5) UMP-CMP kinase (EC 2.7.4.14) (Cytidylate kinase)| (Deoxycytidylate kinase) (Cytidine monophosphate kinase) (Uridine monophosphate/cytidine monophosphate kinase) (UMP/CMP kinase) (UMP/CMPK) (Uridine monophosphate kinase) Length = 196 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +2 Query: 281 PLILGIWGGKGQGKSFQCELVFAKMG 358 PL++ + GG G GK QC + K G Sbjct: 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28
>KCY_HUMAN (P30085) UMP-CMP kinase (EC 2.7.4.14) (Cytidylate kinase)| (Deoxycytidylate kinase) (Cytidine monophosphate kinase) (Uridine monophosphate/cytidine monophosphate kinase) (UMP/CMP kinase) (UMP/CMPK) (Uridine monophosphate kinase) Length = 196 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = +2 Query: 281 PLILGIWGGKGQGKSFQCELVFAKMG 358 PL++ + GG G GK QC + K G Sbjct: 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28
>KAD1_CHICK (P05081) Adenylate kinase isoenzyme 1 (EC 2.7.4.3) (ATP-AMP| transphosphorylase) (AK1) (Myokinase) Length = 194 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = +2 Query: 257 MTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMG 358 M+ +K I+ + GG G GK QCE + K G Sbjct: 1 MSTEKLKHHKIIFVVGGPGSGKGTQCEKIVHKYG 34
>TOR3A_MOUSE (Q9ER38) Torsin-3A precursor (Torsin family 3 member A)| (ATP-dependent interferon-responsive protein) Length = 385 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = +2 Query: 227 KLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELV 343 KLV+ K ++ +P + L L G G GK+F ++ Sbjct: 130 KLVLRAVKGYLEMPQVGKALALSFHGWSGTGKNFLARIL 168
>UCK1_MOUSE (P52623) Uridine-cytidine kinase 1 (EC 2.7.1.48) (UCK 1) (Uridine| monophosphokinase 1) (Cytidine monophosphokinase 1) Length = 277 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = +2 Query: 281 PLILGIWGGKGQGKSFQCELVFAKMG 358 P ++G+ GG GKS CE + +G Sbjct: 23 PFLIGVSGGTASGKSTVCEKIMELLG 48
>UCK1_HUMAN (Q9HA47) Uridine-cytidine kinase 1 (EC 2.7.1.48) (UCK 1) (Uridine| monophosphokinase 1) (Cytidine monophosphokinase 1) Length = 277 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = +2 Query: 281 PLILGIWGGKGQGKSFQCELVFAKMG 358 P ++G+ GG GKS CE + +G Sbjct: 23 PFLIGVSGGTASGKSTVCEKIMELLG 48
>URK_CLOPE (Q8XJI6) Uridine kinase (EC 2.7.1.48) (Uridine monophosphokinase)| (Cytidine monophosphokinase) Length = 208 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +2 Query: 272 IKIPLILGIWGGKGQGKSFQCELVFAKMG 358 +K P+ +GI GG G GKS + ++ + G Sbjct: 1 MKRPIFIGITGGTGSGKSTIAKEIYRQFG 29
>TOR3A_RAT (Q5M936) Torsin-3A precursor (Torsin family 3 member A)| Length = 395 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = +2 Query: 227 KLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELV 343 KLV+ K ++ +P + L L G G GK+F ++ Sbjct: 140 KLVLEAVKGYLEMPQVGKALALSFHGWSGTGKNFVARML 178
>PLDP1_ARATH (Q9LRZ5) Phospholipase D p1 (EC 3.1.4.4) (AtPLDp1) (Phospholipase| D1 PHOX and PX containing domain) (Phospholipase D zeta 1) (PLDzeta1) Length = 1096 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%) Frame = +3 Query: 240 ISPKTS*PCPTSRSHSSWVSGEARVKEN-HSS 332 + P+TS C RS S W +G ++V+E+ HS+ Sbjct: 732 VGPRTSCRCQIIRSVSQWSAGTSQVEESIHSA 763
>KAD_CYPCA (P12115) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase)| Length = 193 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +2 Query: 272 IKIPLILGIWGGKGQGKSFQCELVFAKMG 358 IK I+ + GG G GK QCE + K G Sbjct: 4 IKDAKIVFVVGGPGSGKGTQCEKIVEKYG 32
>DPOLM_HUMAN (Q9NP87) DNA polymerase mu (EC 2.7.7.7) (Pol Mu)| Length = 494 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/40 (42%), Positives = 22/40 (55%) Frame = -2 Query: 214 RSDVEASHGVVEVVLPQALADVLVGAEDGLVGAVARGRLE 95 RSDV+A VVE +A+ L GA L G RG+L+ Sbjct: 292 RSDVDALQQVVE----EAVGQALPGATVTLTGGFRRGKLQ 327
>POLG_CXB6S (Q9QL88) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2183 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/52 (21%), Positives = 26/52 (50%) Frame = -3 Query: 375 VNSYLMPILANTSSHWNDFP*PLPPQIPKMSGILMLGRVMKFLERWTTSLSM 220 +++Y +P+ +N + F PL P + +LG ++ + W+ S+ + Sbjct: 394 MDAYRIPVQSNMDTGGQVFGFPLQPGASSVFQRTLLGEILNYYTHWSGSIKL 445
>DHA2_STAAW (Q8NW54) Alanine dehydrogenase 2 (EC 1.4.1.1)| Length = 372 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/55 (23%), Positives = 28/55 (50%) Frame = +2 Query: 125 EAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLI 289 E + S Y Y +GL + + + + A +D+ V+ ++ + LP+ +PL+ Sbjct: 75 EPLESEYPYFKEGLVLFTYLHLANEEKLTQALIDRKVISIAYETVQLPDRSLPLL 129
>DHA2_STAAS (Q6G8L8) Alanine dehydrogenase 2 (EC 1.4.1.1)| Length = 372 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/55 (23%), Positives = 28/55 (50%) Frame = +2 Query: 125 EAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLI 289 E + S Y Y +GL + + + + A +D+ V+ ++ + LP+ +PL+ Sbjct: 75 EPLESEYPYFKEGLVLFTYLHLANEEKLTQALIDRKVISIAYETVQLPDRSLPLL 129
>DHA2_STAAR (Q6GFZ8) Alanine dehydrogenase 2 (EC 1.4.1.1)| Length = 372 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/55 (23%), Positives = 28/55 (50%) Frame = +2 Query: 125 EAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLI 289 E + S Y Y +GL + + + + A +D+ V+ ++ + LP+ +PL+ Sbjct: 75 EPLESEYPYFKEGLVLFTYLHLANEEKLTQALIDRKVISIAYETVQLPDRSLPLL 129
>DHA2_STAAC (Q5HF65) Alanine dehydrogenase 2 (EC 1.4.1.1)| Length = 372 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/55 (23%), Positives = 28/55 (50%) Frame = +2 Query: 125 EAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLI 289 E + S Y Y +GL + + + + A +D+ V+ ++ + LP+ +PL+ Sbjct: 75 EPLESEYPYFKEGLVLFTYLHLANEEKLTQALIDRKVISIAYETVQLPDRSLPLL 129 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,131,191 Number of Sequences: 219361 Number of extensions: 1092510 Number of successful extensions: 3420 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 3348 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3417 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
