ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal25f19 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 613 bits (309), Expect = e-172 Identities = 346/353 (98%), Gaps = 4/353 (1%) Strand = Plus / Plus Query: 11 acaagtggnaagggtcttgcgtacgatatctccgacgaccagcaggnacatcaccagnag 70 |||||||| ||||||||||| ||||||||||||||||||||||| |||||||||| || Sbjct: 317 acaagtgg-aagggtcttgctaccgatatctccgacgaccagcagg-acatcaccag-ag 373 Query: 71 ggaagggcatcgtgggactcgctcttccaggcgcccacgggcgacggcacccacgaggcc 130 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 374 ggaagggcatcgtgg-actcgctcttccaggcgcccacgggcgacggcacccacgaggcc 432 Query: 131 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 433 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 492 Query: 191 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 493 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 552 Query: 251 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 553 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 612 Query: 311 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 613 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 665
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 613 bits (309), Expect = e-172 Identities = 346/353 (98%), Gaps = 4/353 (1%) Strand = Plus / Plus Query: 11 acaagtggnaagggtcttgcgtacgatatctccgacgaccagcaggnacatcaccagnag 70 |||||||| ||||||||||| ||||||||||||||||||||||| |||||||||| || Sbjct: 62 acaagtgg-aagggtcttgctaccgatatctccgacgaccagcagg-acatcaccag-ag 118 Query: 71 ggaagggcatcgtgggactcgctcttccaggcgcccacgggcgacggcacccacgaggcc 130 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119 ggaagggcatcgtgg-actcgctcttccaggcgcccacgggcgacggcacccacgaggcc 177 Query: 131 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 178 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 237 Query: 191 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 238 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 297 Query: 251 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 298 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 357 Query: 311 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 358 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 410
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 557 bits (281), Expect = e-156 Identities = 339/353 (96%), Gaps = 4/353 (1%) Strand = Plus / Plus Query: 11 acaagtggnaagggtcttgcgtacgatatctccgacgaccagcaggnacatcaccagnag 70 |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct: 237 acaagtgg-aagggtcttgcgtacgatatctccgacgaccagcagg-acatcaccag-ag 293 Query: 71 ggaagggcatcgtgggactcgctcttccaggcgcccacgggcgacggcacccacgaggcc 130 ||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||| Sbjct: 294 ggaagggcatcgtgg-actccctcttccaggcgcccactggcgacggcacccacgaggcc 352 Query: 131 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 190 ||||||||||| |||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 353 gtcctcagctcatacgagtacgtcagccagggactcaagaagtacgacttcgacaacacc 412 Query: 191 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 250 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 413 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaag 472 Query: 251 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 473 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 532 Query: 311 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 |||||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct: 533 ggtcaaggaaaatccttccagtgtgagcttgtcttcgccaagatgggcatcaa 585
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 450 bits (227), Expect = e-123 Identities = 261/267 (97%), Gaps = 4/267 (1%) Strand = Plus / Plus Query: 11 acaagtggnaagggtcttgcgtacgatatctccgacgaccagcaggnacatcaccagnag 70 |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| || Sbjct: 5658 acaagtgg-aagggtcttgcgtacgatatctccgacgaccagcagg-acatcaccag-ag 5714 Query: 71 ggaagggcatcgtgggactcgctcttccaggcgcccacgggcgacggcacccacgaggcc 130 ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 5715 ggaagggcatcgtgg-actcgctcttccaggcgcccacggggcacggcacccacgaggcc 5773 Query: 131 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5774 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 5833 Query: 191 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5834 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 5893 Query: 251 aacttcatgaccctgcccaacatcaag 277 ||||||||||||||||||||||||||| Sbjct: 5894 aacttcatgaccctgcccaacatcaag 5920 Score = 311 bits (157), Expect = 9e-82 Identities = 300/344 (87%), Gaps = 3/344 (0%) Strand = Plus / Plus Query: 20 aagggtcttgcgtacgatatctccgacgaccagcaggnacatcaccagnagggaagggca 79 |||||||| || ||||| ||||| ||||||||||||| ||||||| | ||||| |||| Sbjct: 2943 aagggtctggcctacgacatctcggacgaccagcagg-acatcactcgg-gggaaaggca 3000 Query: 80 tcgtgggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 139 |||||| |||| || |||||||| |||| |||||||||||||||||||||| |||| ||| Sbjct: 3001 tcgtgg-actccctgttccaggcccccatgggcgacggcacccacgaggccatcctaagc 3059 Query: 140 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 199 |||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 3060 tcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacggg 3119 Query: 200 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 259 | |||||||| || || |||||||||||||| | ||||| ||| |||| ||||||||| Sbjct: 3120 ctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcatg 3179 Query: 260 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 319 || || |||||||||||| | || |||||| |||||||||||||||||||||| || || Sbjct: 3180 acactccccaacatcaaggttcctctcatcctgggtatctggggaggcaagggacagggc 3239 Query: 320 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 || || |||||||||||||| ||||||||||||||||||||||| Sbjct: 3240 aagtcgttccagtgtgagctggtgttcgccaagatgggcatcaa 3283 Score = 222 bits (112), Expect = 7e-55 Identities = 112/112 (100%) Strand = Plus / Plus Query: 276 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 335 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6070 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 6129 Query: 336 agcttgtgttcgccaagatgggcatcaagtaagaatttacattcatctactt 387 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6130 agcttgtgttcgccaagatgggcatcaagtaagaatttacattcatctactt 6181
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 448 bits (226), Expect = e-123 Identities = 325/353 (92%), Gaps = 4/353 (1%) Strand = Plus / Plus Query: 11 acaagtggnaagggtcttgcgtacgatatctccgacgaccagcaggnacatcaccagnag 70 |||||||| ||||| || || ||||||||||||||||||||||||| |||||||||| | Sbjct: 258 acaagtgg-aagggcctcgcctacgatatctccgacgaccagcagg-acatcaccagg-g 314 Query: 71 ggaagggcatcgtgggactcgctcttccaggcgcccacgggcgacggcacccacgaggcc 130 | ||||| ||||| | |||| || ||||||||||||| |||||| ||||||||||||||| Sbjct: 315 gtaagggtatcgtcg-actccctgttccaggcgcccatgggcgatggcacccacgaggcc 373 Query: 131 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 190 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 374 gtcctcagctcctacgagtacgtcagccagggcctcaagaagtacgacttcgacaacacc 433 Query: 191 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 250 |||||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| Sbjct: 434 atgggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaag 493 Query: 251 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 494 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggaaag 553 Query: 311 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 ||||| || ||||| ||||||||||||||||| |||||||||||||||||||| Sbjct: 554 ggtcaggggaaatccttccagtgtgagcttgtcttcgccaagatgggcatcaa 606
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 428 bits (216), Expect = e-117 Identities = 322/353 (91%), Gaps = 4/353 (1%) Strand = Plus / Plus Query: 11 acaagtggnaagggtcttgcgtacgatatctccgacgaccagcaggnacatcaccagnag 70 |||||||| ||||| || || ||||||||||||||||||||||||| |||||||||| | Sbjct: 248 acaagtgg-aagggcctcgcctacgatatctccgacgaccagcagg-acatcaccagg-g 304 Query: 71 ggaagggcatcgtgggactcgctcttccaggcgcccacgggcgacggcacccacgaggcc 130 | ||||| ||||| | |||| | ||||||||||||| |||||| || |||||||||||| Sbjct: 305 gtaagggtatcgtcg-actccttgttccaggcgcccatgggcgatggnacccacgaggcc 363 Query: 131 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 190 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 364 gtcctcagctcntacgagtacgtcagccagggcctcaagaagtacgacttcgacaacacc 423 Query: 191 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 250 |||||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| Sbjct: 424 atgggaggcttctacatcgccccggctttcatggacaagctcgttgtccacctctccaag 483 Query: 251 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 484 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggaaag 543 Query: 311 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 ||||| || ||||| ||||||||||||||||| |||||||||||||||||||| Sbjct: 544 ggtcaggggaaatccttccagtgtgagcttgtcttcgccaagatgggcatcaa 596
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 375 bits (189), Expect = e-101 Identities = 308/344 (89%), Gaps = 3/344 (0%) Strand = Plus / Plus Query: 20 aagggtcttgcgtacgatatctccgacgaccagcaggnacatcaccagnagggaagggca 79 |||||||| || ||||| |||||||| |||||||||| |||||||||| |||||||| Sbjct: 213 aagggtctcgcctacgacatctccgatgaccagcagg-acatcaccagg-gggaagggtt 270 Query: 80 tcgtgggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 139 |||| | |||| || |||||||| |||||||| || |||||||||||||||||||||||| Sbjct: 271 tcgtcg-actcccttttccaggctcccacgggtgatggcacccacgaggccgtcctcagc 329 Query: 140 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 199 |||||||||||| |||||||||| || | | |||||||||||||||||||||||||||| Sbjct: 330 tcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggaggc 389 Query: 200 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 259 ||||||||||| |||||||||||||||||||| || ||||| ||||||| ||||||||| Sbjct: 390 ttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaacttcatg 449 Query: 260 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 319 ||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 450 accctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggtcaggga 509 Query: 320 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 ||||| |||||||||||||| || |||||||||||||| ||||| Sbjct: 510 aaatccttccagtgtgagctcgtcttcgccaagatggggatcaa 553
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 375 bits (189), Expect = e-101 Identities = 308/344 (89%), Gaps = 3/344 (0%) Strand = Plus / Plus Query: 20 aagggtcttgcgtacgatatctccgacgaccagcaggnacatcaccagnagggaagggca 79 |||||||| || ||||| |||||||| |||||||||| |||||||||| |||||||| Sbjct: 250 aagggtctcgcctacgacatctccgatgaccagcagg-acatcaccagg-gggaagggtt 307 Query: 80 tcgtgggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 139 |||| | |||| || |||||||| |||||||| || |||||||||||||||||||||||| Sbjct: 308 tcgtcg-actcccttttccaggctcccacgggtgatggcacccacgaggccgtcctcagc 366 Query: 140 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 199 |||||||||||| |||||||||| || | | |||||||||||||||||||||||||||| Sbjct: 367 tcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggaggc 426 Query: 200 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 259 ||||||||||| |||||||||||||||||||| || ||||| ||||||| ||||||||| Sbjct: 427 ttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaacttcatg 486 Query: 260 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 319 ||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 487 accctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggtcaggga 546 Query: 320 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 ||||| |||||||||||||| || |||||||||||||| ||||| Sbjct: 547 aaatccttccagtgtgagctcgtcttcgccaagatggggatcaa 590
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 375 bits (189), Expect = e-101 Identities = 308/344 (89%), Gaps = 3/344 (0%) Strand = Plus / Plus Query: 20 aagggtcttgcgtacgatatctccgacgaccagcaggnacatcaccagnagggaagggca 79 |||||||| || ||||| |||||||| |||||||||| |||||||||| |||||||| Sbjct: 249 aagggtctcgcctacgacatctccgatgaccagcagg-acatcaccagg-gggaagggtt 306 Query: 80 tcgtgggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 139 |||| | |||| || |||||||| |||||||| || |||||||||||||||||||||||| Sbjct: 307 tcgtcg-actcccttttccaggctcccacgggtgatggcacccacgaggccgtcctcagc 365 Query: 140 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 199 |||||||||||| |||||||||| || | | |||||||||||||||||||||||||||| Sbjct: 366 tcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggaggc 425 Query: 200 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 259 ||||||||||| |||||||||||||||||||| || ||||| ||||||| ||||||||| Sbjct: 426 ttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaacttcatg 485 Query: 260 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 319 ||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 486 accctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggtcaggga 545 Query: 320 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 ||||| |||||||||||||| || |||||||||||||| ||||| Sbjct: 546 aaatccttccagtgtgagctcgtcttcgccaagatggggatcaa 589
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 375 bits (189), Expect = e-101 Identities = 308/344 (89%), Gaps = 3/344 (0%) Strand = Plus / Plus Query: 20 aagggtcttgcgtacgatatctccgacgaccagcaggnacatcaccagnagggaagggca 79 |||||||| || ||||| |||||||| |||||||||| |||||||||| |||||||| Sbjct: 33 aagggtctcgcctacgacatctccgatgaccagcagg-acatcaccagg-gggaagggtt 90 Query: 80 tcgtgggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 139 |||| | |||| || |||||||| |||||||| || |||||||||||||||||||||||| Sbjct: 91 tcgtcg-actcccttttccaggctcccacgggtgatggcacccacgaggccgtcctcagc 149 Query: 140 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 199 |||||||||||| |||||||||| || | | |||||||||||||||||||||||||||| Sbjct: 150 tcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggaggc 209 Query: 200 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 259 ||||||||||| |||||||||||||||||||| || ||||| ||||||| ||||||||| Sbjct: 210 ttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaacttcatg 269 Query: 260 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 319 ||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 270 accctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggtcaggga 329 Query: 320 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 ||||| |||||||||||||| || |||||||||||||| ||||| Sbjct: 330 aaatccttccagtgtgagctcgtcttcgccaagatggggatcaa 373
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 375 bits (189), Expect = e-101 Identities = 308/344 (89%), Gaps = 3/344 (0%) Strand = Plus / Plus Query: 20 aagggtcttgcgtacgatatctccgacgaccagcaggnacatcaccagnagggaagggca 79 |||||||| || ||||| |||||||| |||||||||| |||||||||| |||||||| Sbjct: 254 aagggtctcgcctacgacatctccgatgaccagcagg-acatcaccagg-gggaagggtt 311 Query: 80 tcgtgggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 139 |||| | |||| || |||||||| |||||||| || |||||||||||||||||||||||| Sbjct: 312 tcgtcg-actcccttttccaggctcccacgggtgatggcacccacgaggccgtcctcagc 370 Query: 140 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 199 |||||||||||| |||||||||| || | | |||||||||||||||||||||||||||| Sbjct: 371 tcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggaggc 430 Query: 200 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 259 ||||||||||| |||||||||||||||||||| || ||||| ||||||| ||||||||| Sbjct: 431 ttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaacttcatg 490 Query: 260 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 319 ||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 491 accctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggtcaggga 550 Query: 320 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 ||||| |||||||||||||| || |||||||||||||| ||||| Sbjct: 551 aaatccttccagtgtgagctcgtcttcgccaagatggggatcaa 594
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 375 bits (189), Expect = e-101 Identities = 308/344 (89%), Gaps = 3/344 (0%) Strand = Plus / Plus Query: 20 aagggtcttgcgtacgatatctccgacgaccagcaggnacatcaccagnagggaagggca 79 |||||||| || ||||| |||||||| |||||||||| |||||||||| |||||||| Sbjct: 248 aagggtctcgcctacgacatctccgatgaccagcagg-acatcaccagg-gggaagggtt 305 Query: 80 tcgtgggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 139 |||| | |||| || |||||||| |||||||| || |||||||||||||||||||||||| Sbjct: 306 tcgtcg-actcccttttccaggctcccacgggtgatggcacccacgaggccgtcctcagc 364 Query: 140 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 199 |||||||||||| |||||||||| || | | |||||||||||||||||||||||||||| Sbjct: 365 tcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggaggc 424 Query: 200 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 259 ||||||||||| |||||||||||||||||||| || ||||| ||||||| ||||||||| Sbjct: 425 ttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaacttcatg 484 Query: 260 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 319 ||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 485 accctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggtcaggga 544 Query: 320 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 ||||| |||||||||||||| || |||||||||||||| ||||| Sbjct: 545 aaatccttccagtgtgagctcgtcttcgccaagatggggatcaa 588
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 367 bits (185), Expect = 2e-98 Identities = 307/344 (89%), Gaps = 3/344 (0%) Strand = Plus / Plus Query: 20 aagggtcttgcgtacgatatctccgacgaccagcaggnacatcaccagnagggaagggca 79 |||||||| || ||||| |||||||| |||||||||| |||||||||| |||||||| Sbjct: 221 aagggtctcgcctacgacatctccgatgaccagcagg-acatcaccagg-gggaagggtt 278 Query: 80 tcgtgggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 139 |||| | |||| || |||||||| |||||||| || |||||||||||||||||||||||| Sbjct: 279 tcgtcg-actcccttttccaggctcccacgggtgatggcacccacgaggccgtcctcagc 337 Query: 140 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 199 |||||||||||| |||||||||| || | | |||||||||||||||||||||||||||| Sbjct: 338 tcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggaggc 397 Query: 200 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 259 ||||||||||| ||| |||||||||||||||| || ||||| ||||||| ||||||||| Sbjct: 398 ttctacatcgccccttctttcatggacaagctcgtcgtccacatctccaagaacttcatg 457 Query: 260 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 319 ||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| Sbjct: 458 accctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggtcaggga 517 Query: 320 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 ||||| |||||||||||||| || |||||||||||||| ||||| Sbjct: 518 aaatccttccagtgtgagctcgtcttcgccaagatggggatcaa 561
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 367 bits (185), Expect = 2e-98 Identities = 307/344 (89%), Gaps = 3/344 (0%) Strand = Plus / Plus Query: 20 aagggtcttgcgtacgatatctccgacgaccagcaggnacatcaccagnagggaagggca 79 |||||||| || ||||| |||||||| |||||||||| |||||||||| |||||||| Sbjct: 261 aagggtctcgcctacgacatctccgatgaccagcagg-acatcaccagg-gggaagggtt 318 Query: 80 tcgtgggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 139 |||| | |||| || |||||||| |||||||| || |||||||||||||||||||||||| Sbjct: 319 tcgtcg-actcccttttccaggctcccacgggtgatggcacccacgaggccgtcctcagc 377 Query: 140 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 199 |||||||||||| |||||||||| || | | |||||||||||||||||||||||||||| Sbjct: 378 tcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggaggc 437 Query: 200 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 259 ||||||||||| |||||||||||||||||||| || ||||| ||||||| ||||||||| Sbjct: 438 ttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaacttcatg 497 Query: 260 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 319 ||||| |||||||||||| ||||||||| | ||||||||||||||||||||||||| ||| Sbjct: 498 accctccccaacatcaaggtcccactcaccctgggtatctggggaggcaagggtcaggga 557 Query: 320 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 ||||| |||||||||||||| || |||||||||||||| ||||| Sbjct: 558 aaatccttccagtgtgagctcgtcttcgccaagatggggatcaa 601
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 311 bits (157), Expect = 9e-82 Identities = 300/344 (87%), Gaps = 3/344 (0%) Strand = Plus / Plus Query: 20 aagggtcttgcgtacgatatctccgacgaccagcaggnacatcaccagnagggaagggca 79 |||||||| || ||||| |||||||| |||||||||| ||||||| || ||||| |||| Sbjct: 221 aagggtctcgcttacgacatctccgatgaccagcagg-acatcacgagg-gggaaaggca 278 Query: 80 tcgtgggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 139 |||||| |||| || |||||||| |||| |||||||||||||||||||||| |||| ||| Sbjct: 279 tcgtgg-actccctgttccaggcccccatgggcgacggcacccacgaggccatcctgagc 337 Query: 140 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 199 |||||||||||| |||||||||||||||| ||||||||||||||||||||||||| || Sbjct: 338 tcctacgagtacatcagccagggcctgcgcaagtacgacttcgacaacaccatggacggg 397 Query: 200 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 259 | |||||||| || || |||||||||||||| | ||||| ||| |||| ||||||||| Sbjct: 398 ctgtacatcgccccggcgttcatggacaagctcatcgtccacctcgccaagaacttcatg 457 Query: 260 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 319 || || |||||||||||| |||| |||||| |||||||||||||||||||||| || || Sbjct: 458 acactccccaacatcaaggtccctctcatcctgggtatctggggaggcaagggacagggc 517 Query: 320 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 || || |||||||| ||||| ||||||||||||||||||||||| Sbjct: 518 aagtcgttccagtgcgagctggtgttcgccaagatgggcatcaa 561
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 311 bits (157), Expect = 9e-82 Identities = 300/344 (87%), Gaps = 3/344 (0%) Strand = Plus / Plus Query: 20 aagggtcttgcgtacgatatctccgacgaccagcaggnacatcaccagnagggaagggca 79 |||||||| || ||||| ||||| ||||||||||||| ||||||| | ||||| |||| Sbjct: 374 aagggtctggcctacgacatctcggacgaccagcagg-acatcactcgg-gggaaaggca 431 Query: 80 tcgtgggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 139 |||||| |||| || |||||||| |||| |||||||||||||||||||||| |||| ||| Sbjct: 432 tcgtgg-actccctgttccaggcccccatgggcgacggcacccacgaggccatcctaagc 490 Query: 140 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 199 |||||||||||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct: 491 tcctacgagtacatcagccagggcctgcggaagtacgacttcgacaacaccatggacggg 550 Query: 200 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 259 | |||||||| || || |||||||||||||| | ||||| ||| |||| ||||||||| Sbjct: 551 ctgtacatcgcgccggcattcatggacaagctcatcgtccacctcgccaagaacttcatg 610 Query: 260 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 319 || || |||||||||||| | || |||||| |||||||||||||||||||||| || || Sbjct: 611 acactccccaacatcaaggttcctctcatcctgggtatctggggaggcaagggacagggc 670 Query: 320 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 || || |||||||||||||| ||||||||||||||||||||||| Sbjct: 671 aagtcgttccagtgtgagctggtgttcgccaagatgggcatcaa 714
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 289 bits (146), Expect = 3e-75 Identities = 206/226 (91%) Strand = Plus / Plus Query: 138 gctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggag 197 |||||||||||||| |||||||||| || | | |||||||||||||||||||||||||| Sbjct: 327 gctcctacgagtacctcagccagggtctcagaacgtacgacttcgacaacaccatgggag 386 Query: 198 gcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttca 257 ||||||||||||| |||||||||||||||||||| || ||||| ||||||| ||||||| Sbjct: 387 gcttctacatcgcccctgctttcatggacaagctcgtcgtccacatctccaagaacttca 446 Query: 258 tgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaag 317 ||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| | Sbjct: 447 tgaccctccccaacatcaaggtcccactcatcctgggtatctggggaggcaagggtcagg 506 Query: 318 gaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 ||||||| |||||||||||||| || |||||||||||||| ||||| Sbjct: 507 gaaaatccttccagtgtgagctcgtcttcgccaagatggggatcaa 552
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 274 bits (138), Expect = 2e-70 Identities = 180/194 (92%) Strand = Plus / Minus Query: 172 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 231 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 109435 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 109376 Query: 232 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 291 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 109375 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 109316 Query: 292 gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 351 |||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||| Sbjct: 109315 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 109256 Query: 352 gatgggcatcaagt 365 |||||| ||||||| Sbjct: 109255 gatggggatcaagt 109242 Score = 127 bits (64), Expect = 3e-26 Identities = 126/143 (88%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 20 aagggtcttgcgtacgatatctccgacgaccagcaggnacatcaccagnagggaagggca 79 |||||||| || ||||| |||||||| |||||||||| |||||||||| |||||||| Sbjct: 109697 aagggtctcgcctacgacatctccgatgaccagcagg-acatcaccagg-gggaagggtt 109640 Query: 80 tcgtgggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 139 |||| | |||| || |||||||| |||||||| || |||||||||||||||||||||||| Sbjct: 109639 tcgtcg-actcccttttccaggctcccacgggtgatggcacccacgaggccgtcctcagc 109581 Query: 140 tcctacgagtacgtcagccaggg 162 |||||||||||| |||||||||| Sbjct: 109580 tcctacgagtacctcagccaggg 109558 Score = 77.8 bits (39), Expect = 2e-11 Identities = 95/110 (86%), Gaps = 3/110 (2%) Strand = Plus / Minus Query: 20 aagggtcttgcgtacgatatctccgacgaccagcaggnacatcaccagnagggaagggca 79 ||||| || |||||||| ||||||||||||||||||| |||||||||| ||||||||| Sbjct: 113201 aagggactcgcgtacgacatctccgacgaccagcagg-acatcaccagg-gggaagggcc 113144 Query: 80 tcgtgggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 129 |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 113143 tcgt-cgactccctgttccaggctcccatgggtgatggcacccacgaggc 113095 Score = 48.1 bits (24), Expect = 0.021 Identities = 36/40 (90%) Strand = Plus / Minus Query: 326 ttccagtgtgagcttgtgttcgccaagatgggcatcaagt 365 ||||||||||| || || |||||||||||||| ||||||| Sbjct: 112906 ttccagtgtgatctcgtcttcgccaagatggggatcaagt 112867
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 274 bits (138), Expect = 2e-70 Identities = 180/194 (92%) Strand = Plus / Minus Query: 172 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 231 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 31312 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 31253 Query: 232 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 291 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 31252 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 31193 Query: 292 gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 351 |||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||| Sbjct: 31192 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 31133 Query: 352 gatgggcatcaagt 365 |||||| ||||||| Sbjct: 31132 gatggggatcaagt 31119 Score = 127 bits (64), Expect = 3e-26 Identities = 126/143 (88%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 20 aagggtcttgcgtacgatatctccgacgaccagcaggnacatcaccagnagggaagggca 79 |||||||| || ||||| |||||||| |||||||||| |||||||||| |||||||| Sbjct: 31574 aagggtctcgcctacgacatctccgatgaccagcagg-acatcaccagg-gggaagggtt 31517 Query: 80 tcgtgggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 139 |||| | |||| || |||||||| |||||||| || |||||||||||||||||||||||| Sbjct: 31516 tcgtcg-actcccttttccaggctcccacgggtgatggcacccacgaggccgtcctcagc 31458 Query: 140 tcctacgagtacgtcagccaggg 162 |||||||||||| |||||||||| Sbjct: 31457 tcctacgagtacctcagccaggg 31435 Score = 77.8 bits (39), Expect = 2e-11 Identities = 95/110 (86%), Gaps = 3/110 (2%) Strand = Plus / Minus Query: 20 aagggtcttgcgtacgatatctccgacgaccagcaggnacatcaccagnagggaagggca 79 ||||| || |||||||| ||||||||||||||||||| |||||||||| ||||||||| Sbjct: 35078 aagggactcgcgtacgacatctccgacgaccagcagg-acatcaccagg-gggaagggcc 35021 Query: 80 tcgtgggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 129 |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 35020 tcgt-cgactccctgttccaggctcccatgggtgatggcacccacgaggc 34972 Score = 48.1 bits (24), Expect = 0.021 Identities = 36/40 (90%) Strand = Plus / Minus Query: 326 ttccagtgtgagcttgtgttcgccaagatgggcatcaagt 365 ||||||||||| || || |||||||||||||| ||||||| Sbjct: 34783 ttccagtgtgatctcgtcttcgccaagatggggatcaagt 34744
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 274 bits (138), Expect = 2e-70 Identities = 180/194 (92%) Strand = Plus / Minus Query: 172 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 231 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 28304574 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28304515 Query: 232 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 291 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 28304514 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 28304455 Query: 292 gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 351 |||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||| Sbjct: 28304454 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 28304395 Query: 352 gatgggcatcaagt 365 |||||| ||||||| Sbjct: 28304394 gatggggatcaagt 28304381 Score = 127 bits (64), Expect = 3e-26 Identities = 126/143 (88%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 20 aagggtcttgcgtacgatatctccgacgaccagcaggnacatcaccagnagggaagggca 79 |||||||| || ||||| |||||||| |||||||||| |||||||||| |||||||| Sbjct: 28304836 aagggtctcgcctacgacatctccgatgaccagcagg-acatcaccagg-gggaagggtt 28304779 Query: 80 tcgtgggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 139 |||| | |||| || |||||||| |||||||| || |||||||||||||||||||||||| Sbjct: 28304778 tcgtcg-actcccttttccaggctcccacgggtgatggcacccacgaggccgtcctcagc 28304720 Query: 140 tcctacgagtacgtcagccaggg 162 |||||||||||| |||||||||| Sbjct: 28304719 tcctacgagtacctcagccaggg 28304697 Score = 77.8 bits (39), Expect = 2e-11 Identities = 95/110 (86%), Gaps = 3/110 (2%) Strand = Plus / Minus Query: 20 aagggtcttgcgtacgatatctccgacgaccagcaggnacatcaccagnagggaagggca 79 ||||| || |||||||| ||||||||||||||||||| |||||||||| ||||||||| Sbjct: 28308340 aagggactcgcgtacgacatctccgacgaccagcagg-acatcaccagg-gggaagggcc 28308283 Query: 80 tcgtgggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 129 |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28308282 tcgt-cgactccctgttccaggctcccatgggtgatggcacccacgaggc 28308234 Score = 48.1 bits (24), Expect = 0.021 Identities = 36/40 (90%) Strand = Plus / Minus Query: 326 ttccagtgtgagcttgtgttcgccaagatgggcatcaagt 365 ||||||||||| || || |||||||||||||| ||||||| Sbjct: 28308045 ttccagtgtgatctcgtcttcgccaagatggggatcaagt 28308006
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 274 bits (138), Expect = 2e-70 Identities = 180/194 (92%) Strand = Plus / Minus Query: 172 gtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagct 231 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 28287023 gtacgacttcgacaacaccatgggaggcttctacatcgcccctgctttcatggacaagct 28286964 Query: 232 tgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatctt 291 || ||||| ||||||| |||||||||||||| |||||||||||| ||||||||||| | Sbjct: 28286963 cgtcgtccacatctccaagaacttcatgaccctccccaacatcaaggtcccactcatcct 28286904 Query: 292 gggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaa 351 |||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||| Sbjct: 28286903 gggtatctggggaggcaagggtcagggaaaatccttccagtgtgagctcgtcttcgccaa 28286844 Query: 352 gatgggcatcaagt 365 |||||| ||||||| Sbjct: 28286843 gatggggatcaagt 28286830 Score = 127 bits (64), Expect = 3e-26 Identities = 126/143 (88%), Gaps = 3/143 (2%) Strand = Plus / Minus Query: 20 aagggtcttgcgtacgatatctccgacgaccagcaggnacatcaccagnagggaagggca 79 |||||||| || ||||| |||||||| |||||||||| |||||||||| |||||||| Sbjct: 28287285 aagggtctcgcctacgacatctccgatgaccagcagg-acatcaccagg-gggaagggtt 28287228 Query: 80 tcgtgggactcgctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagc 139 |||| | |||| || |||||||| |||||||| || |||||||||||||||||||||||| Sbjct: 28287227 tcgtcg-actcccttttccaggctcccacgggtgatggcacccacgaggccgtcctcagc 28287169 Query: 140 tcctacgagtacgtcagccaggg 162 |||||||||||| |||||||||| Sbjct: 28287168 tcctacgagtacctcagccaggg 28287146 Score = 77.8 bits (39), Expect = 2e-11 Identities = 95/110 (86%), Gaps = 3/110 (2%) Strand = Plus / Minus Query: 20 aagggtcttgcgtacgatatctccgacgaccagcaggnacatcaccagnagggaagggca 79 ||||| || |||||||| ||||||||||||||||||| |||||||||| ||||||||| Sbjct: 28290789 aagggactcgcgtacgacatctccgacgaccagcagg-acatcaccagg-gggaagggcc 28290732 Query: 80 tcgtgggactcgctcttccaggcgcccacgggcgacggcacccacgaggc 129 |||| ||||| || |||||||| |||| ||| || |||||||||||||| Sbjct: 28290731 tcgt-cgactccctgttccaggctcccatgggtgatggcacccacgaggc 28290683 Score = 48.1 bits (24), Expect = 0.021 Identities = 36/40 (90%) Strand = Plus / Minus Query: 326 ttccagtgtgagcttgtgttcgccaagatgggcatcaagt 365 ||||||||||| || || |||||||||||||| ||||||| Sbjct: 28290494 ttccagtgtgatctcgtcttcgccaagatggggatcaagt 28290455
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 194 bits (98), Expect = 1e-46 Identities = 265/317 (83%), Gaps = 3/317 (0%) Strand = Plus / Plus Query: 47 gaccagcaggnacatcaccagnagggaagggcatcgtgggactcgctcttccaggcgccc 106 |||||||||| |||||||||| ||||||||||| || | |||| || |||||||| ||| Sbjct: 235 gaccagcagg-acatcaccagg-gggaagggcatggtcg-actccctgttccaggctccc 291 Query: 107 acgggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctg 166 | ||||||||| |||||| | ||||||| ||||||||||||||| ||||| || || Sbjct: 292 atgggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctc 351 Query: 167 cggaagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggac 226 || || | |||| ||||||||| || || || ||||||||||| || ||||||||| Sbjct: 352 cgctcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggac 411 Query: 227 aagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactc 286 |||||||| || || || |||| |||||||||| | |||||||||||||||| || ||| Sbjct: 412 aagcttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctc 471 Query: 287 atcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttc 346 || |||||||||||||||||||| |||||||| ||||| ||||| ||||| ||||||||| Sbjct: 472 attttgggtatctggggaggcaaaggtcaagggaaatccttccaatgtgaacttgtgttc 531 Query: 347 gccaagatgggcatcaa 363 ||||||||||| ||||| Sbjct: 532 gccaagatgggaatcaa 548
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 194 bits (98), Expect = 1e-46 Identities = 265/317 (83%), Gaps = 3/317 (0%) Strand = Plus / Plus Query: 47 gaccagcaggnacatcaccagnagggaagggcatcgtgggactcgctcttccaggcgccc 106 |||||||||| |||||||||| ||||||||||| || | |||| || |||||||| ||| Sbjct: 98 gaccagcagg-acatcaccagg-gggaagggcatggtcg-actccctgttccaggctccc 154 Query: 107 acgggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctg 166 | ||||||||| |||||| | ||||||| ||||||||||||||| ||||| || || Sbjct: 155 atgggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctc 214 Query: 167 cggaagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggac 226 || || | |||| ||||||||| || || || ||||||||||| || ||||||||| Sbjct: 215 cgctcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggac 274 Query: 227 aagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactc 286 |||||||| || || || |||| |||||||||| | |||||||||||||||| || ||| Sbjct: 275 aagcttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctc 334 Query: 287 atcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttc 346 || |||||||||||||||||||| |||||||| ||||| ||||| ||||| ||||||||| Sbjct: 335 attttgggtatctggggaggcaaaggtcaagggaaatccttccaatgtgaacttgtgttc 394 Query: 347 gccaagatgggcatcaa 363 ||||||||||| ||||| Sbjct: 395 gccaagatgggaatcaa 411
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 190 bits (96), Expect = 2e-45 Identities = 275/331 (83%), Gaps = 3/331 (0%) Strand = Plus / Plus Query: 32 tacgatatctccgacgaccagcaggnacatcaccagnagggaagggcatcgtgggactcg 91 ||||| ||||| ||||||||||||| |||||||||| || |||||| |||| | || Sbjct: 234 tacgacatctcggacgaccagcagg-acatcaccagg-ggcaagggcctcgtcg-acaac 290 Query: 92 ctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacgagtac 151 |||||||||||||| | ||| ||||||||||||| ||||| |||||||||||||| ||| Sbjct: 291 ctcttccaggcgcctatgggggacggcacccacgtcgccgtgctcagctcctacgactac 350 Query: 152 gtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctacatcgct 211 |||||||||||| | ||| |||||||||||| |||| ||||||||||| || Sbjct: 351 atcagccagggccaaaagtcttacaacttcgacaacatgatggatggcttctacatagcc 410 Query: 212 cctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaac 271 | |||||||||||||| || ||||| |||||||| ||||||||||||||||| ||| Sbjct: 411 aagggcttcatggacaagctcgtcgtccacctctccaagaacttcatgaccctgccaaac 470 Query: 272 atcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccag 331 |||||| | || |||||| ||||||||||||||||||| || || |||||||| ||||| Sbjct: 471 atcaaggttcccctcatcctgggtatctggggaggcaaaggccagggaaaatcgttccaa 530 Query: 332 tgtgagcttgtgttcgccaagatgggcatca 362 || ||||| || ||||||||||||||||||| Sbjct: 531 tgcgagctggtcttcgccaagatgggcatca 561
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 186 bits (94), Expect = 4e-44 Identities = 264/317 (83%), Gaps = 3/317 (0%) Strand = Plus / Plus Query: 47 gaccagcaggnacatcaccagnagggaagggcatcgtgggactcgctcttccaggcgccc 106 |||||||||| |||||||||| ||||||||||| || | |||| || |||||||| ||| Sbjct: 128 gaccagcagg-acatcaccagg-gggaagggcatggtcg-actccctgttccaggctccc 184 Query: 107 acgggcgacggcacccacgaggccgtcctcagctcctacgagtacgtcagccagggcctg 166 | ||||||||| |||||| | ||||||| ||||||||||||||| ||||| || || Sbjct: 185 atgggcgacggaacccacaaccccgtcctgagctcctacgagtacatcagcaccggtctc 244 Query: 167 cggaagtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggac 226 || || | |||| ||||||||| || || || ||||||||||| || ||||||||| Sbjct: 245 cgctcgttcaacttggacaacaccgtgaatggtttatacatcgctccggccttcatggac 304 Query: 227 aagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactc 286 |||||||| || || || |||| |||||||||| | |||||||||||||||| || ||| Sbjct: 305 aagcttgtcgttcacatcaccaagaacttcatgaacttgcccaacatcaagattcctctc 364 Query: 287 atcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttc 346 || |||||||||||||||||||| ||||| || ||||| ||||| ||||| ||||||||| Sbjct: 365 attttgggtatctggggaggcaaaggtcaggggaaatccttccaatgtgaacttgtgttc 424 Query: 347 gccaagatgggcatcaa 363 ||||||||||| ||||| Sbjct: 425 gccaagatgggaatcaa 441
>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete cds Length = 1674 Score = 174 bits (88), Expect = 1e-40 Identities = 190/224 (84%) Strand = Plus / Plus Query: 140 tcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggc 199 |||||||| ||||||||||| || || || ||||| |||| ||||||| ||| || Sbjct: 396 tcctacgaatacgtcagccaaggtcttcgccagtacaacttggacaacaagttggacgga 455 Query: 200 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 259 |||||||||||||||||||||||||||||||||||||| || || |||| |||||| || Sbjct: 456 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttg 515 Query: 260 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 319 | |||||||||||||| | ||||| ||||||||||||||||||||||| |||||||| Sbjct: 516 aaattgcccaacatcaaggttccacttatcttgggtatctggggaggcaaaggtcaaggc 575 Query: 320 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 ||||||||||||||||| ||||| ||| |||||||| ||||| Sbjct: 576 aaatcattccagtgtgaacttgtcttcagaaagatgggaatcaa 619
>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.2 mRNA, complete cds Length = 1815 Score = 168 bits (85), Expect = 8e-39 Identities = 196/233 (84%) Strand = Plus / Plus Query: 131 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 190 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555 Query: 191 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 250 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615 Query: 251 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 310 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 675 Query: 311 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 |||||||| ||||| ||||||||||||||||| | ||||||||||| ||||| Sbjct: 676 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaa 728
>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.3 mRNA, complete cds Length = 1928 Score = 168 bits (85), Expect = 8e-39 Identities = 196/233 (84%) Strand = Plus / Plus Query: 131 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 190 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 496 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 555 Query: 191 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 250 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 556 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 615 Query: 251 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 310 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 616 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 675 Query: 311 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 |||||||| ||||| ||||||||||||||||| | ||||||||||| ||||| Sbjct: 676 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaa 728
>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.1 mRNA, complete cds Length = 1833 Score = 168 bits (85), Expect = 8e-39 Identities = 196/233 (84%) Strand = Plus / Plus Query: 131 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 190 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584 Query: 191 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 250 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644 Query: 251 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 310 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 704 Query: 311 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 |||||||| ||||| ||||||||||||||||| | ||||||||||| ||||| Sbjct: 705 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaa 757
>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein (At2g39730) mRNA, complete cds Length = 1697 Score = 168 bits (85), Expect = 8e-39 Identities = 196/233 (84%) Strand = Plus / Plus Query: 131 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 190 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466 Query: 191 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 250 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526 Query: 251 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 310 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 586 Query: 311 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 |||||||| ||||| ||||||||||||||||| | ||||||||||| ||||| Sbjct: 587 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaa 639
>gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730/T5I7.3) mRNA, complete cds Length = 1425 Score = 168 bits (85), Expect = 8e-39 Identities = 196/233 (84%) Strand = Plus / Plus Query: 131 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 190 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 322 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 381 Query: 191 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 250 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 382 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 441 Query: 251 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 310 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 442 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 501 Query: 311 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 |||||||| ||||| ||||||||||||||||| | ||||||||||| ||||| Sbjct: 502 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaa 554
>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds Length = 1674 Score = 168 bits (85), Expect = 8e-39 Identities = 196/233 (84%) Strand = Plus / Plus Query: 131 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 190 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469 Query: 191 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 250 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529 Query: 251 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 310 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 589 Query: 311 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 |||||||| ||||| ||||||||||||||||| | ||||||||||| ||||| Sbjct: 590 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaa 642
>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1693 Score = 168 bits (85), Expect = 8e-39 Identities = 196/233 (84%) Strand = Plus / Plus Query: 131 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 190 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 399 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 458 Query: 191 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 250 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 459 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 518 Query: 251 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 310 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 519 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 578 Query: 311 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 |||||||| ||||| ||||||||||||||||| | ||||||||||| ||||| Sbjct: 579 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaa 631
>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1655 Score = 168 bits (85), Expect = 8e-39 Identities = 196/233 (84%) Strand = Plus / Plus Query: 131 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 190 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 407 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 466 Query: 191 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 250 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 467 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 526 Query: 251 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 310 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 527 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 586 Query: 311 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 |||||||| ||||| ||||||||||||||||| | ||||||||||| ||||| Sbjct: 587 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaa 639
>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds Length = 1674 Score = 168 bits (85), Expect = 8e-39 Identities = 196/233 (84%) Strand = Plus / Plus Query: 131 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 190 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 410 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 469 Query: 191 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 250 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 470 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 529 Query: 251 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 310 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 530 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 589 Query: 311 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 |||||||| ||||| ||||||||||||||||| | ||||||||||| ||||| Sbjct: 590 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaa 642
>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence Length = 1787 Score = 168 bits (85), Expect = 8e-39 Identities = 196/233 (84%) Strand = Plus / Plus Query: 131 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 190 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 525 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 584 Query: 191 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 250 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 585 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 644 Query: 251 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 310 |||||| |||| ||||| ||||||||| | ||||| || |||||||| ||||||||||| Sbjct: 645 aacttcttgactctgcctaacatcaaggttccacttattttgggtatatggggaggcaaa 704 Query: 311 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 |||||||| ||||| ||||||||||||||||| | ||||||||||| ||||| Sbjct: 705 ggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaa 757
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 165 bits (83), Expect = 1e-37 Identities = 191/227 (84%) Strand = Plus / Plus Query: 137 agctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacaccatggga 196 |||||||| |||||| | ||||| ||||| || | |||||||| ||||||| ||||| Sbjct: 397 agctcctatgagtacattagccaaggccttcgcacatacgacttggacaacaacatggat 456 Query: 197 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 256 || |||||||| || || ||||||||||||||||||||||| || || |||| |||| | Sbjct: 457 ggattctacattgccccagctttcatggacaagcttgttgttcacatcaccaagaactac 516 Query: 257 atgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaa 316 |||||||| || ||||| ||| | || || ||||||||||| ||||||||||| |||||| Sbjct: 517 atgacccttcctaacattaaggttcctcttatcttgggtatttggggaggcaaaggtcaa 576 Query: 317 ggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 |||||||| ||||| ||||||||||| || ||||||||||| ||||| Sbjct: 577 ggaaaatctttccaatgtgagcttgtctttgccaagatgggaatcaa 623 Score = 40.1 bits (20), Expect = 5.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 20 aagggtcttgcgtacgatatctccgacgacca 51 ||||||||||| || ||||||||||| ||||| Sbjct: 283 aagggtcttgcttatgatatctccgatgacca 314
>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 mRNA, complete cds Length = 1433 Score = 163 bits (82), Expect = 5e-37 Identities = 157/182 (86%) Strand = Plus / Plus Query: 182 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 241 ||||||| ||||| || |||||||| |||||||| |||||||||||||||||||| || Sbjct: 256 gacaacaacatggatggtttctacattgctcctgcattcatggacaagcttgttgttcac 315 Query: 242 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctgg 301 || |||| ||||||||| |||| || ||||| ||| | || || ||||||||||| ||| Sbjct: 316 atcaccaagaacttcatgtccctccctaacattaaggttcctctaatcttgggtatttgg 375 Query: 302 ggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatc 361 |||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||| Sbjct: 376 ggaggcaaaggtcaaggaaaatctttccaatgtgagcttgtgtttgccaagatgggtatc 435 Query: 362 aa 363 || Sbjct: 436 aa 437
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 161 bits (81), Expect = 2e-36 Identities = 141/161 (87%) Strand = Plus / Plus Query: 203 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 262 ||||||||||| || ||||||||||||||||| || || || |||| |||||||||| | Sbjct: 87 tacatcgctccggccttcatggacaagcttgtcgttcacatcaccaagaacttcatgaac 146 Query: 263 ctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaa 322 |||||||||||||||| || ||||| |||||||||||||||||||| ||||| || ||| Sbjct: 147 ttgcccaacatcaagattcctctcattttgggtatctggggaggcaaaggtcaggggaaa 206 Query: 323 tcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 || ||||| ||||| |||||||||||||||||||| ||||| Sbjct: 207 tccttccaatgtgaacttgtgttcgccaagatgggaatcaa 247
>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds Length = 1634 Score = 159 bits (80), Expect = 8e-36 Identities = 143/164 (87%) Strand = Plus / Plus Query: 200 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 259 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 476 ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 535 Query: 260 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 319 || || |||||||| ||| | || ||||| ||||||||||||||||| || |||||||| Sbjct: 536 actctccccaacataaaggttcctctcattttgggtatctggggaggtaaaggtcaaggt 595 Query: 320 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 ||||| ||||||||||||||||| || ||||||||||| ||||| Sbjct: 596 aaatctttccagtgtgagcttgtctttgccaagatgggaatcaa 639
>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds Length = 1832 Score = 159 bits (80), Expect = 8e-36 Identities = 134/152 (88%) Strand = Plus / Plus Query: 201 tctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatga 260 ||||||| || ||||| || ||||||||||||||||| || || |||| |||||| ||| Sbjct: 630 tctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttcttga 689 Query: 261 ccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaa 320 | |||||||||||||||| ||||||||||||||| | |||||||||||||||||||| | Sbjct: 690 acttgcccaacatcaagataccactcatcttgggtgtttggggaggcaagggtcaaggta 749 Query: 321 aatcattccagtgtgagcttgtgttcgccaag 352 |||| ||||| ||||||||||||||||||||| Sbjct: 750 aatccttccaatgtgagcttgtgttcgccaag 781
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 155 bits (78), Expect = 1e-34 Identities = 156/182 (85%) Strand = Plus / Plus Query: 182 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccat 241 ||||||| ||||| || ||||||||||||||||| |||||||||||||||||||| || Sbjct: 257 gacaacaacatggatggtttctacatcgctcctgcattcatggacaagcttgttgttcac 316 Query: 242 ctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctgg 301 || ||| ||||||||| |||| || ||||| ||| | || || ||| ||||||| ||| Sbjct: 317 atcagcaagaacttcatgtccctccctaacattaaggttcctctaatcctgggtatttgg 376 Query: 302 ggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatc 361 |||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||| Sbjct: 377 ggaggcaaaggtcaaggaaaatctttccaatgtgagcttgtgtttgccaagatgggtatc 436 Query: 362 aa 363 || Sbjct: 437 aa 438
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 153 bits (77), Expect = 5e-34 Identities = 128/145 (88%) Strand = Plus / Plus Query: 218 ttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaag 277 |||||||||||||| || ||||| |||||||| ||||||||||||||||| ||||||||| Sbjct: 22 ttcatggacaagctcgtcgtccacctctccaagaacttcatgaccctgccaaacatcaag 81 Query: 278 atcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgag 337 | || |||||| ||||||||||||||||||| || || |||||||| ||||| || ||| Sbjct: 82 gttcccctcatcctgggtatctggggaggcaaaggccagggaaaatcgttccaatgcgag 141 Query: 338 cttgtgttcgccaagatgggcatca 362 || || ||||||||||||||||||| Sbjct: 142 ctggtcttcgccaagatgggcatca 166
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 153 bits (77), Expect = 5e-34 Identities = 269/331 (81%), Gaps = 3/331 (0%) Strand = Plus / Plus Query: 32 tacgatatctccgacgaccagcaggnacatcaccagnagggaagggcatcgtgggactcg 91 ||||| ||||| ||||||||||||| |||||||||| || |||||| |||| | || Sbjct: 234 tacgacatctcggacgaccagcagg-acatcaccagg-ggcaagggcctcgtcg-acaac 290 Query: 92 ctcttccaggcgcccacgggcgacggcacccacgaggccgtcctcagctcctacgagtac 151 |||||||||||||| | |||||||||||| ||||| |||||||||||||| ||| Sbjct: 291 ctcttccaggcgcctatnnnnnacggcacccacgtcgccgtgctcagctcctacgactac 350 Query: 152 gtcagccagggcctgcggaagtacgacttcgacaacaccatgggaggcttctacatcgct 211 |||||||||||| | ||| |||||||||||| |||| ||||||||||| || Sbjct: 351 atcagccagggccaaaagtcttacaacttcgacaacatgatggatggcttctacatagcc 410 Query: 212 cctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgcccaac 271 | |||||||||||||| || ||||| |||||||| ||||||||||||||||| ||| Sbjct: 411 aagggcttcatggacaagctcgtcgtccacctctccaagaacttcatgaccctgccaaac 470 Query: 272 atcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccag 331 |||||| | || |||||| |||||||| ||||||||| || || |||||||| ||||| Sbjct: 471 atcaaggttcccctcatcctgggtatcgtgggaggcaaaggccagggaaaatcgttccaa 530 Query: 332 tgtgagcttgtgttcgccaagatgggcatca 362 || ||||| || ||||||||||||||||||| Sbjct: 531 tgcgagctggtcttcgccaagatgggcatca 561
>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear gene for chloroplast product Length = 1671 Score = 151 bits (76), Expect = 2e-33 Identities = 142/164 (86%) Strand = Plus / Plus Query: 200 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 259 |||||||| ||||||||||| |||||||||||||||| || || |||| ||||||||| Sbjct: 469 ttctacattgctcctgcttttctggacaagcttgttgttcacatcaccaagaacttcatg 528 Query: 260 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 319 ||| |||||||||||||| | || ||||| | |||||||||||||||||||| |||||| Sbjct: 529 accttgcccaacatcaaggttcctctcattcttggtatctggggaggcaagggacaagga 588 Query: 320 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 || || ||||| ||||||||||| || ||||||||||| ||||| Sbjct: 589 aagtctttccaatgtgagcttgtctttgccaagatgggaatcaa 632
>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase (pJQ4) Length = 1655 Score = 151 bits (76), Expect = 2e-33 Identities = 142/164 (86%) Strand = Plus / Plus Query: 200 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 259 ||||||||||||||| |||||||||||||||||||||| || || |||| |||||| || Sbjct: 426 ttctacatcgctccttctttcatggacaagcttgttgttcacatcaccaagaacttcttg 485 Query: 260 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 319 | |||||||||||||| | |||||||| |||||| ||||||||||||| |||||||| Sbjct: 486 aaattgcccaacatcaaggttccactcattttgggtgtctggggaggcaaaggtcaaggt 545 Query: 320 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 ||||| ||||||||||||||||| ||| |||||||| ||||| Sbjct: 546 aaatctttccagtgtgagcttgtcttcagaaagatgggaatcaa 589
>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds Length = 1656 Score = 149 bits (75), Expect = 8e-33 Identities = 144/167 (86%) Strand = Plus / Plus Query: 197 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 256 ||||||||||| || ||||||||||||||||| |||||||| || || |||| |||||| Sbjct: 434 ggcttctacattgcccctgctttcatggacaaacttgttgttcacatcaccaagaacttc 493 Query: 257 atgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaa 316 |||| |||||||||||||| | ||||||||||||||| | ||||||||||| |||||| Sbjct: 494 ttgacattgcccaacatcaaggttccactcatcttgggtgtatggggaggcaaaggtcaa 553 Query: 317 ggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 || ||||||||||| ||||||||||| ||| |||||||| ||||| Sbjct: 554 ggtaaatcattccaatgtgagcttgtcttcagaaagatgggaatcaa 600
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 145 bits (73), Expect = 1e-31 Identities = 163/193 (84%) Strand = Plus / Plus Query: 171 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 230 ||||| |||| ||||||| ||||| || |||||||| || || || ||||||||||||| Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490 Query: 231 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 290 |||| ||||| || |||| |||||| ||| || || ||||||||||| || || |||| Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatct 550 Query: 291 tgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcca 350 ||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| || |||| Sbjct: 551 tgggtatctggggaggcaaaggtcaaggaaaatctttccaatgtgaacttgtttttgcca 610 Query: 351 agatgggcatcaa 363 ||||||| ||||| Sbjct: 611 agatgggaatcaa 623
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 145 bits (73), Expect = 1e-31 Identities = 163/193 (84%) Strand = Plus / Plus Query: 171 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 230 ||||| |||| ||||||| ||||| || |||||||| || || || ||||||||||||| Sbjct: 431 agtacaacttggacaacaacatggacggtttctacatagcaccagccttcatggacaagc 490 Query: 231 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 290 |||| ||||| || |||| |||||| ||| || || ||||||||||| || || |||| Sbjct: 491 ttgtcgtccacatcaccaagaacttcttgagtctccctaacatcaagattcctctgatct 550 Query: 291 tgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcca 350 ||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| || |||| Sbjct: 551 tgggtatctggggaggcaaaggtcaaggaaaatctttccaatgtgaacttgtttttgcca 610 Query: 351 agatgggcatcaa 363 ||||||| ||||| Sbjct: 611 agatgggaatcaa 623
>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds Length = 1627 Score = 145 bits (73), Expect = 1e-31 Identities = 163/193 (84%) Strand = Plus / Plus Query: 171 agtacgacttcgacaacaccatgggaggcttctacatcgctcctgctttcatggacaagc 230 ||||| |||| ||||||| || || || |||||||| ||||| ||||| ||||||||| Sbjct: 436 agtacaactttgacaacatcaaggatggtttctacattgctccagcttttttggacaagc 495 Query: 231 ttgttgtccatctctccaaaaacttcatgaccctgcccaacatcaagatcccactcatct 290 ||||||| || || |||| |||||||||||| |||||||||||||| | || ||||| Sbjct: 496 ttgttgttcacatcgccaagaacttcatgaccttgcccaacatcaaggttcctctcattc 555 Query: 291 tgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgcca 350 | ||| |||||||||||||||| ||||||||||| ||||| ||||||||||| || |||| Sbjct: 556 ttggtgtctggggaggcaagggacaaggaaaatctttccaatgtgagcttgtctttgcca 615 Query: 351 agatgggcatcaa 363 ||||||| ||||| Sbjct: 616 agatgggaatcaa 628
>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase Length = 1652 Score = 139 bits (70), Expect = 8e-30 Identities = 195/234 (83%), Gaps = 2/234 (0%) Strand = Plus / Plus Query: 131 gtcctcagctcctacgagtacgtcagccagggcctgcggaagtacgacttcgacaacacc 190 ||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||| ||||||| Sbjct: 391 gtccttagctcatacgaatacgttagccaaggccttaggcagtacaacttggacaacatg 450 Query: 191 atgggaggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaa 250 |||| || || ||||| ||||||||||||||||||||||||||||| || || |||| Sbjct: 451 atggatgggttttacattgctcctgctttcatggacaagcttgttgttcacatcaccaag 510 Query: 251 aacttcatgaccctgcccaacatcaagatcccactcatcttggg-tatctggggaggcaa 309 |||||| |||| ||||| ||||||||| | ||||| || ||||| | || |||||||||| Sbjct: 511 aacttcttgactctgcctaacatcaaggttccacttattttgggctctc-ggggaggcaa 569 Query: 310 gggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 |||||||| ||||| ||||||||||||||||| | ||||||||||| ||||| Sbjct: 570 aggtcaaggtaaatccttccagtgtgagcttgtcatggccaagatgggtatcaa 623
>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds Length = 1809 Score = 137 bits (69), Expect = 3e-29 Identities = 141/165 (85%) Strand = Plus / Plus Query: 199 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 258 ||||||||| || ||| |||||||||||||| ||||||| || || |||| |||| | | Sbjct: 514 cttctacattgccccttctttcatggacaagattgttgttcacatcaccaagaactactt 573 Query: 259 gaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagg 318 || | |||| ||||||||| | || || ||||||||||| ||||||||||| |||||||| Sbjct: 574 gaacttgcctaacatcaaggttcccctgatcttgggtatttggggaggcaaaggtcaagg 633 Query: 319 aaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 ||||| ||||| |||||||||||||||||||||||||| ||||| Sbjct: 634 taaatccttccaatgtgagcttgtgttcgccaagatgggaatcaa 678
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 135 bits (68), Expect = 1e-28 Identities = 140/164 (85%) Strand = Plus / Plus Query: 200 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 259 |||||||||||||||||||||||||||||||||||||| || || |||| |||||| | Sbjct: 473 ttctacatcgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttctta 532 Query: 260 accctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaagga 319 || |||||||||||||| | ||||| || |||||| | |||||||| || |||||||| Sbjct: 533 acgttgcccaacatcaaggttccacttattttgggtgtttggggaggaaaaggtcaaggt 592 Query: 320 aaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 ||||||||||| ||||||||||| ||| |||||||| ||||| Sbjct: 593 aaatcattccaatgtgagcttgtcttcagaaagatgggaatcaa 636
>emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubisco activase (rca gene) Length = 678 Score = 129 bits (65), Expect = 7e-27 Identities = 122/141 (86%) Strand = Plus / Plus Query: 202 ctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgac 261 |||||| ||||||||||| ||||||||||||||||| || |||| ||||||||||||| Sbjct: 156 ctacattgctcctgcttttatggacaagcttgttgttcacatctcgaaaaacttcatgaa 215 Query: 262 cctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaa 321 | |||| ||||||||| | || ||||| | ||||| ||||||||||||||||||||||| Sbjct: 216 cttgcctaacatcaaggttcctctcattcttggtatttggggaggcaagggtcaaggaaa 275 Query: 322 atcattccagtgtgagcttgt 342 || ||||| ||||||||||| Sbjct: 276 gtccttccaatgtgagcttgt 296
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 117 bits (59), Expect = 3e-23 Identities = 125/147 (85%) Strand = Plus / Plus Query: 209 gctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgaccctgccc 268 ||||| ||||| ||||||||||||||||| || || |||| |||||||||||||| || Sbjct: 485 gctcccgcttttatggacaagcttgttgttcacatcaccaagaacttcatgacccttcct 544 Query: 269 aacatcaagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattc 328 ||||| ||| | || |||||||||||||| ||||||||||| ||||| || || || ||| Sbjct: 545 aacatgaaggttcctctcatcttgggtatttggggaggcaaaggtcagggcaagtctttc 604 Query: 329 cagtgtgagcttgtgttcgccaagatg 355 ||||| |||||||| || ||||||||| Sbjct: 605 cagtgcgagcttgtctttgccaagatg 631
>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase {alternatively spliced} [spinach, Genomic, 3691 nt] Length = 3691 Score = 105 bits (53), Expect = 1e-19 Identities = 71/77 (92%) Strand = Plus / Plus Query: 276 agatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtg 335 |||| ||||||||||||||| | |||||||||||||||||||| ||||| ||||| |||| Sbjct: 2238 agataccactcatcttgggtgtttggggaggcaagggtcaaggtaaatccttccaatgtg 2297 Query: 336 agcttgtgttcgccaag 352 ||||||||||||||||| Sbjct: 2298 agcttgtgttcgccaag 2314 Score = 61.9 bits (31), Expect = 1e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 199 cttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcat 258 ||||||||| || ||||| || ||||||||||||||||| || || |||| |||||| | Sbjct: 2067 cttctacattgcccctgcctttatggacaagcttgttgttcacatcaccaagaacttctt 2126 Query: 259 gaccctgcccaacatcaag 277 || | |||||||||||||| Sbjct: 2127 gaacttgcccaacatcaag 2145
>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds Length = 1216 Score = 99.6 bits (50), Expect = 7e-18 Identities = 74/82 (90%) Strand = Plus / Plus Query: 284 ctcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtg 343 ||||| ||||||||||||||||| || |||||||| ||||| ||||||||||||||||| Sbjct: 186 ctcattttgggtatctggggaggtaaaggtcaaggtaaatctttccagtgtgagcttgtc 245 Query: 344 ttcgccaagatgggcatcaagt 365 || ||||||||||| ||||||| Sbjct: 246 tttgccaagatgggaatcaagt 267 Score = 67.9 bits (34), Expect = 2e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 200 ttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatg 259 |||||||| ||||| |||||||||||||||||||| || || || |||||||||||||| Sbjct: 6 ttctacatagctccagctttcatggacaagcttgtcgttcacatcaccaaaaacttcatg 65 Query: 260 ac 261 || Sbjct: 66 ac 67
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence Length = 92624 Score = 89.7 bits (45), Expect = 6e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 281 ccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagctt 340 ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||||||||||| Sbjct: 14733 ccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagtgtgagctt 14674 Query: 341 gtgttcgccaagatgggcatcaagt 365 || | ||||||||||| ||||||| Sbjct: 14673 gtcatggccaagatgggtatcaagt 14649 Score = 77.8 bits (39), Expect = 2e-11 Identities = 66/75 (88%) Strand = Plus / Minus Query: 203 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 262 ||||| ||||||||||||||||||||||||||||| || || |||| |||||| |||| Sbjct: 14910 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 14851 Query: 263 ctgcccaacatcaag 277 ||||| ||||||||| Sbjct: 14850 ctgcctaacatcaag 14836
>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase activase (rca) gene, complete cds Length = 3974 Score = 89.7 bits (45), Expect = 6e-15 Identities = 75/85 (88%) Strand = Plus / Plus Query: 281 ccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagctt 340 ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||||||||||| Sbjct: 2550 ccacttattttgggtatatggggaggcaaaggtcaaggtaaatccttccagtgtgagctt 2609 Query: 341 gtgttcgccaagatgggcatcaagt 365 || | ||||||||||| ||||||| Sbjct: 2610 gtcatggccaagatgggtatcaagt 2634 Score = 77.8 bits (39), Expect = 2e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 203 tacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttcatgacc 262 ||||| ||||||||||||||||||||||||||||| || || |||| |||||| |||| Sbjct: 2373 tacattgctcctgctttcatggacaagcttgttgttcacatcaccaagaacttcttgact 2432 Query: 263 ctgcccaacatcaag 277 ||||| ||||||||| Sbjct: 2433 ctgcctaacatcaag 2447
>gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete sequence Length = 105218 Score = 87.7 bits (44), Expect = 2e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 293 ggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaag 352 |||||||||||||| || |||||||||||||| ||||| ||||||||| || |||||| Sbjct: 104933 ggtatctggggaggtaaaggtcaaggaaaatctttccaagctgagcttgtctttgccaag 104874 Query: 353 atgggcatcaagtaag 368 |||||||||||||||| Sbjct: 104873 atgggcatcaagtaag 104858
>gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete sequence Length = 163160 Score = 87.7 bits (44), Expect = 2e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 293 ggtatctggggaggcaagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaag 352 |||||||||||||| || |||||||||||||| ||||| ||||||||| || |||||| Sbjct: 83958 ggtatctggggaggtaaaggtcaaggaaaatctttccaagctgagcttgtctttgccaag 83899 Query: 353 atgggcatcaagtaag 368 |||||||||||||||| Sbjct: 83898 atgggcatcaagtaag 83883 Score = 56.0 bits (28), Expect = 9e-05 Identities = 49/56 (87%) Strand = Plus / Minus Query: 182 gacaacaccatgggaggcttctacatcgctcctgctttcatggacaagcttgttgt 237 ||||||||||||| || || ||||| || |||||||| ||||||||||||||||| Sbjct: 84295 gacaacaccatggatggtttttacattgcacctgcttttatggacaagcttgttgt 84240
>gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete sequence Length = 108028 Score = 81.8 bits (41), Expect = 2e-12 Identities = 80/93 (86%) Strand = Plus / Minus Query: 275 aagatcccactcatcttgggtatctggggaggcaagggtcaaggaaaatcattccagtgt 334 ||||| || ||||| ||||| || ||||||||||| ||||||||||| ||||| || ||| Sbjct: 7541 aagattcctctcatattgggcatttggggaggcaaaggtcaaggaaagtcatttcaatgt 7482 Query: 335 gagcttgtgttcgccaagatgggcatcaagtaa 367 |||||||| || ||||||||||| |||| |||| Sbjct: 7481 gagcttgtatttgccaagatgggaatcaggtaa 7449
>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase Length = 2031 Score = 65.9 bits (33), Expect = 9e-08 Identities = 93/113 (82%) Strand = Plus / Plus Query: 251 aacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaag 310 |||||| ||||||| || ||||| ||| | || ||||| ||||| | |||||||| || Sbjct: 522 aacttcttgaccctcccgaacattaaggttcctctcattctgggtgtttggggaggtaaa 581 Query: 311 ggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 ||||||||||| || ||||||||||| ||||| || || |||||||| ||||| Sbjct: 582 ggtcaaggaaagtctttccagtgtgaacttgtatttgctaagatgggaatcaa 634
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 65.9 bits (33), Expect = 9e-08 Identities = 102/125 (81%) Strand = Plus / Plus Query: 197 ggcttctacatcgctcctgctttcatggacaagcttgttgtccatctctccaaaaacttc 256 |||||||||||| ||||||||||| |||| ||| | ||||| | |||| |||||| Sbjct: 1128 ggcttctacatctctcctgctttcctggataagatgaccatccatgttgccaagaacttc 1187 Query: 257 atgaccctgcccaacatcaagatcccactcatcttgggtatctggggaggcaagggtcaa 316 ||| ||||||||| |||||| | || |||||| ||||||||||||| |||||||| || Sbjct: 1188 atggacctgcccaagatcaaggttcccctcatcctgggtatctggggtggcaagggccag 1247 Query: 317 ggaaa 321 ||||| Sbjct: 1248 ggaaa 1252
>gb|AF114155.1|AF114155 Artemisia annua ribulose-1,5-bisphosphate carboxylase/oxygenase activase pseudogene, partial sequence Length = 472 Score = 61.9 bits (31), Expect = 1e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 308 aagggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatca 362 ||||||||||||||||| ||||| ||||| ||||| || ||||||||||| |||| Sbjct: 1 aagggtcaaggaaaatctttccaatgtgaacttgtttttgccaagatgggaatca 55
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 54.0 bits (27), Expect = 3e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 246 ccaaaaacttcatgaccctgcccaacatcaagatcccactcatcttgggtatctggggag 305 |||| ||||||||| ||||||||| |||||| | || ||||| ||||||||||||| | Sbjct: 406 ccaagaacttcatggacctgcccaagatcaaggtgcccctcattctgggtatctggggtg 465 Query: 306 gcaaggg 312 ||||||| Sbjct: 466 gcaaggg 472
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 46.1 bits (23), Expect = 0.084 Identities = 44/51 (86%) Strand = Plus / Plus Query: 262 cctgcccaacatcaagatcccactcatcttgggtatctggggaggcaaggg 312 ||||||||| |||||| | || ||||| ||||||||||||| |||||||| Sbjct: 1634 cctgcccaagatcaaggtgcccctcattctgggtatctggggtggcaaggg 1684
>gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, partial cds Length = 1063 Score = 46.1 bits (23), Expect = 0.084 Identities = 47/55 (85%) Strand = Plus / Plus Query: 309 agggtcaaggaaaatcattccagtgtgagcttgtgttcgccaagatgggcatcaa 363 |||| ||||||||||| ||||| ||||||||| || ||||||||||| ||||| Sbjct: 7 agggacaaggaaaatctttccaagctgagcttgtctttgccaagatgggaatcaa 61
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Minus Query: 87 actcgctcttccaggcgcccac 108 |||||||||||||||||||||| Sbjct: 2553524 actcgctcttccaggcgcccac 2553503
>emb|AL606695.3|OSJN00112 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0103I08, complete sequence Length = 140449 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 359 atcaagtaagaatttacattc 379 ||||||||||||||||||||| Sbjct: 51607 atcaagtaagaatttacattc 51587
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 359 atcaagtaagaatttacattc 379 ||||||||||||||||||||| Sbjct: 27108964 atcaagtaagaatttacattc 27108944
>ref|XM_520373.1| PREDICTED: Pan troglodytes LOC464867 (LOC464867), mRNA Length = 1685 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 104 cccacgggcgacggcacccacgag 127 ||||||||||||| |||||||||| Sbjct: 1369 cccacgggcgacgtcacccacgag 1392
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 ccctgcccaacatcaagatc 280 |||||||||||||||||||| Sbjct: 1130357 ccctgcccaacatcaagatc 1130376
>ref|NM_017617.2| Homo sapiens Notch homolog 1, translocation-associated (Drosophila) (NOTCH1), mRNA Length = 9312 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 104 cccacgggcgacggcacccacgag 127 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>gb|AC009991.5|ATAC009991 Arabidopsis thaliana chromosome III BAC F9F8 genomic sequence, complete sequence Length = 101284 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 ttccagtgtgagcttgtgtt 345 |||||||||||||||||||| Sbjct: 97287 ttccagtgtgagcttgtgtt 97268
>gb|AC115709.11| Mus musculus chromosome 12, clone RP23-76M3, complete sequence Length = 193170 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 ggcttctacatcgctcctgctttc 220 ||||||| |||||||||||||||| Sbjct: 147044 ggcttctgcatcgctcctgctttc 147067
>emb|AL592301.14| Human DNA sequence from clone RP11-413M3 on chromosome 9 Contains the 3' end of the gene for activator of G-protein signalling 3 (AGS3), two novel genes, the CARD9 gene for caspase recruitment domain family member 9, the SNAPC4 gene for a 190kDa small nuclear RNA activating complex polypeptide 4, the SDCCAG3 gene for serologically defined colon cancer antigen 3, the INPP5E gene for a 72kDa inositol polyphosphate-5-phosphatase, the gene for phosphatidylinositol polyphosphate 5-phosphatase type IV (PPI5PIV), a novel gene (KIAA0310), the 3' end of the NOTCH1 gene for Notch homolog 1 translocation-associated (Drosophila) and twenty CpG islands, complete sequence Length = 188462 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 104 cccacgggcgacggcacccacgag 127 ||||||||||||| |||||||||| Sbjct: 166513 cccacgggcgacgtcacccacgag 166490
>gb|AC108471.3| Homo sapiens BAC clone RP11-539G18 from 4, complete sequence Length = 141442 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 gtccatctctccaaaaactt 255 |||||||||||||||||||| Sbjct: 63248 gtccatctctccaaaaactt 63229
>gb|AE009524.1| Brucella melitensis 16M chromosome I, section 81 of 195 of the complete sequence Length = 10900 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 ccctgcccaacatcaagatc 280 |||||||||||||||||||| Sbjct: 7760 ccctgcccaacatcaagatc 7741
>gb|AF308602.1|AF308602 Homo sapiens NOTCH 1 (N1) mRNA, complete cds Length = 7693 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 104 cccacgggcgacggcacccacgag 127 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 cgatatctccgacgaccagc 53 |||||||||||||||||||| Sbjct: 4182002 cgatatctccgacgaccagc 4181983
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 ccctgcccaacatcaagatc 280 |||||||||||||||||||| Sbjct: 1147720 ccctgcccaacatcaagatc 1147739
>emb|CR974583.24| Mouse DNA sequence from clone RP23-118G7 on chromosome 12, complete sequence Length = 219072 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 197 ggcttctacatcgctcctgctttc 220 ||||||| |||||||||||||||| Sbjct: 141825 ggcttctgcatcgctcctgctttc 141848
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 ccctgcccaacatcaagatc 280 |||||||||||||||||||| Sbjct: 1144872 ccctgcccaacatcaagatc 1144891
>gb|U51683.1|BAU51683 Brucella abortus phosphatidate cytidyltransferase (cdsA), group 1 outer membrane protein (omp1), LpxD (lpxD), FabZ (fabZ), and LpxA (lpxA) genes, complete cds Length = 8895 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 ccctgcccaacatcaagatc 280 |||||||||||||||||||| Sbjct: 8238 ccctgcccaacatcaagatc 8219
>gb|M73980.1|HUMTAN1 Human TAN-1 mRNA (homologue of Drosophila Notch gene), 5' end Length = 7332 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 104 cccacgggcgacggcacccacgag 127 ||||||||||||| |||||||||| Sbjct: 703 cccacgggcgacgtcacccacgag 726 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,788,381 Number of Sequences: 3902068 Number of extensions: 2788381 Number of successful extensions: 48432 Number of sequences better than 10.0: 86 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48145 Number of HSP's gapped (non-prelim): 267 length of query: 389 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 367 effective length of database: 17,147,199,772 effective search space: 6293022316324 effective search space used: 6293022316324 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
