>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +1

Query: 55  MAAAFSSTVGAPASTPTNFLGKKL 126
           MAAAFSSTVGAPASTPTNFLGKKL
Sbjct: 1   MAAAFSSTVGAPASTPTNFLGKKL 24

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +1

Query: 55  MAAAFSSTVGAPASTPTNFLGKKL 126
           MAAAFSSTVGAPASTPTNFLGKKL
Sbjct: 1   MAAAFSSTVGAPASTPTNFLGKKL 24

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 21/24 (87%), Positives = 23/24 (95%)
 Frame = +1

Query: 55  MAAAFSSTVGAPASTPTNFLGKKL 126
           MA+AFSSTVGAPASTPT FLGKK+
Sbjct: 1   MASAFSSTVGAPASTPTIFLGKKV 24

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 23/26 (88%), Positives = 24/26 (92%), Gaps = 2/26 (7%)
 Frame = +1

Query: 55  MAAAFSSTVGAPASTPT--NFLGKKL 126
           MAAAFSSTVGAPASTPT  +FLGKKL
Sbjct: 1   MAAAFSSTVGAPASTPTRSSFLGKKL 26

>TRIPC_HUMAN (Q14669) Thyroid receptor-interacting protein 12 (TRIP12)|
          Length = 1992

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +3

Query: 12  AHPPLLARSTKQHRDGCCLLLHRRGSG 92
           A  P L RST+Q   G C    RRGSG
Sbjct: 315 AELPSLRRSTRQKTTGSCASTSRRGSG 341

>RSMB_PSEPK (Q88RR3) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 436

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 6   SRAHPPLLARSTKQH--RDGCCLLLHRRGSGFYADQLPRE 119
           + AHPP++ R  ++H  RD    LL   G G  A Q  R+
Sbjct: 165 NNAHPPMILRVNRRHHSRDAYLALLAEAGIGASACQYSRD 204


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,559,561
Number of Sequences: 219361
Number of extensions: 196072
Number of successful extensions: 663
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 80,573,946
effective HSP length: 18
effective length of database: 76,625,448
effective search space used: 1839010752
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)