ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal25f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR... 238 3e-60
2gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA 202 2e-49
3gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5... 165 4e-38
4gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for... 115 3e-23
5gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form... 109 2e-21
6gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb... 98 7e-18
7dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ... 98 7e-18
8dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 7e-18
9dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 7e-18
10dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 7e-18
11dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 7e-18
12dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s... 98 7e-18
13dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l... 98 7e-18
14gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c... 68 7e-09
15gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome... 62 4e-07
16gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome... 62 4e-07
17dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 62 4e-07
18gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 62 4e-07
19gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox... 58 6e-06
20gb|AY110044.1| Zea mays CL1146_1 mRNA sequence 58 6e-06
21emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA 42 0.38
22emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA 42 0.38
23emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA 42 0.38
24emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA 42 0.38
25emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA 42 0.38
26gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 ... 40 1.5
27ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphop... 40 1.5
28gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, co... 40 1.5
29gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphopro... 40 1.5
30ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain h... 40 1.5
31gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite... 40 1.5
32gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite... 40 1.5
33gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphopro... 40 1.5
34emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on ch... 40 1.5
35gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and co... 40 1.5
36emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta ... 40 1.5
37dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE60023... 40 1.5
38gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-4... 40 1.5
39gb|AC154546.2| Mus musculus BAC clone RP23-431I7 from chromosome... 40 1.5
40gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209.... 40 1.5
41gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Canc... 40 1.5
42dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds 40 1.5
43dbj|AP003156.1| Mus musculus genomic DNA, chromosome 16q clone:R... 40 1.5
44gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete ge... 40 1.5
45emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein... 40 1.5
46ref|XM_517512.1| PREDICTED: Pan troglodytes Rap guanine nucleoti... 38 6.0
47ref|XM_427306.1| PREDICTED: Gallus gallus similar to rab11-famil... 38 6.0
48gb|BC038257.1| Mus musculus cDNA clone MGC:47002 IMAGE:5148367, ... 38 6.0
49ref|XM_863389.1| PREDICTED: Canis familiaris similar to Protein ... 38 6.0
50ref|XM_863386.1| PREDICTED: Canis familiaris similar to Protein ... 38 6.0
51ref|XM_537540.2| PREDICTED: Canis familiaris similar to Protein ... 38 6.0
52gb|AC098721.3| Mus musculus BAC clone RP23-2O23 from 2, complete... 38 6.0
53emb|AL512636.12| Human DNA sequence from clone RP11-213D12 on ch... 38 6.0
54ref|XM_793274.1| PREDICTED: Strongylocentrotus purpuratus simila... 38 6.0
55emb|AL441992.17| Human DNA sequence from clone RP11-545E17 on ch... 38 6.0
56gb|AC093244.2| Homo sapiens chromosome 5 clone RP11-113I22, comp... 38 6.0
57emb|CR606096.1| full-length cDNA clone CS0DK012YE05 of HeLa cell... 38 6.0
58gb|L76557.1|SPIRBCS Spinacia oleracea chloroplast ribulose 1,5-b... 38 6.0
59gb|AF381614.1|AF381614 Magnaporthe grisea clone BAC 14F6 gene se... 38 6.0
60emb|BX936296.17| Mouse DNA sequence from clone RP23-27J1 on chro... 38 6.0
61gb|AC068472.5|AC068472 Homo sapiens chromosome 11, clone RP11-71... 38 6.0
62gb|AC018682.4| Homo sapiens BAC clone RP11-417F21 from 2, comple... 38 6.0
63gb|AC084073.22| Mus musculus strain C57BL/6J chromosome 1 clone ... 38 6.0
64dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 38 6.0
65emb|BX649420.2| Zebrafish DNA sequence from clone CH211-139N7 in... 38 6.0
66emb|BX649243.2| Zebrafish DNA sequence from clone CH211-127E19 i... 38 6.0
67emb|X97600.1|SORBCS2 S.oleracea mRNA for ribulose-1,5-bisphospha... 38 6.0
68emb|X69763.1|STRBCS3 S.tuberosum rbcS3 gene for ribulose-(1,5)-b... 38 6.0
69emb|CR812923.9| Zebrafish DNA sequence from clone DKEY-13G7 in l... 38 6.0
70dbj|AP003464.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 38 6.0
71gb|J03613.1|POTRBCS Potato (S.tuberosum) ribulose bisphosphate c... 38 6.0 
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  238 bits (120), Expect = 3e-60
 Identities = 127/128 (99%), Gaps = 1/128 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagagatggct 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 89  agcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacagagatggct 147

                                                                       
Query: 61  gctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 gctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaag 207

                   
Query: 121 aagctcaa 128
           ||||||||
Sbjct: 208 aagctcaa 215
to top
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  202 bits (102), Expect = 2e-49
 Identities = 114/118 (96%)
 Strand = Plus / Plus

                                                                       
Query: 11  cgcgcatccaccgttgctagcaaggtcgaccaagcagcacagagatggctgctgccttct 70
           ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 18  cgcgcatccaccgctgctagcaaggtcgagcaagcagcacagagatggctgctgccttct 77

                                                                     
Query: 71  cctccaccgtcggggctccggcttctacgccgaccaacttcctcgggaagaagctcaa 128
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  cctccaccgtcggtgccccggcttctacgccgaccaacttcctcgggaagaagctcaa 135
to top
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  165 bits (83), Expect = 4e-38
 Identities = 90/91 (98%), Gaps = 1/91 (1%)
 Strand = Plus / Plus

                                                                        
Query: 1    agcacagccgcgcgcatccaccgttgctagcaaggtcgaccaagcagcacagagatggct 60
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 5309 agcacagccgcgcgcatccaccgttg-tagcaaggtcgaccaagcagcacagagatggct 5367

                                           
Query: 61   gctgccttctcctccaccgtcggggctccgg 91
            |||||||||||||||||||||||||||||||
Sbjct: 5368 gctgccttctcctccaccgtcggggctccgg 5398



 Score = 77.8 bits (39), Expect = 7e-12
 Identities = 39/39 (100%)
 Strand = Plus / Plus

                                                   
Query: 90   ggcttctacgccgaccaacttcctcgggaagaagctcaa 128
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 5518 ggcttctacgccgaccaacttcctcgggaagaagctcaa 5556
to top
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  115 bits (58), Expect = 3e-23
 Identities = 73/78 (93%)
 Strand = Plus / Plus

                                                                       
Query: 51  agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 110
           ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||
Sbjct: 76  agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccgaccagctt 135

                             
Query: 111 cctcgggaagaagctcaa 128
           |||||| || ||||||||
Sbjct: 136 cctcggcaacaagctcaa 153
to top
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  109 bits (55), Expect = 2e-21
 Identities = 72/78 (92%)
 Strand = Plus / Plus

                                                                       
Query: 51  agagatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaactt 110
           ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| |||
Sbjct: 66  agagatggctgctgccttctcctccaccgtcggagctccggcttccacgccnaccagctt 125

                             
Query: 111 cctcgggaagaagctcaa 128
           |||||| || ||||||||
Sbjct: 126 cctcggcaacaagctcaa 143
to top
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase (rca) mRNA, complete cds
          Length = 1675

 Score = 97.6 bits (49), Expect = 7e-18
 Identities = 67/73 (91%)
 Strand = Plus / Plus

                                                                       
Query: 53  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 112
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 33  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 92

                        
Query: 113 tcgggaagaagct 125
           | |||||||||||
Sbjct: 93  tggggaagaagct 105
to top
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for
           ribulose-bisphosphate carboxylase activase large isoform
           precursor protein, complete cds, clone: 13YPR038
          Length = 1558

 Score = 97.6 bits (49), Expect = 7e-18
 Identities = 67/73 (91%)
 Strand = Plus / Plus

                                                                       
Query: 53  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 112
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 25  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 84

                        
Query: 113 tcgggaagaagct 125
           | |||||||||||
Sbjct: 85  tggggaagaagct 97
to top
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
           insert sequence
          Length = 1721

 Score = 97.6 bits (49), Expect = 7e-18
 Identities = 67/73 (91%)
 Strand = Plus / Plus

                                                                       
Query: 53  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 112
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 73  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 132

                        
Query: 113 tcgggaagaagct 125
           | |||||||||||
Sbjct: 133 tggggaagaagct 145
to top
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
           insert sequence
          Length = 1682

 Score = 97.6 bits (49), Expect = 7e-18
 Identities = 67/73 (91%)
 Strand = Plus / Plus

                                                                       
Query: 53  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 112
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 61  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120

                        
Query: 113 tcgggaagaagct 125
           | |||||||||||
Sbjct: 121 tggggaagaagct 133
to top
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
           insert sequence
          Length = 1680

 Score = 97.6 bits (49), Expect = 7e-18
 Identities = 67/73 (91%)
 Strand = Plus / Plus

                                                                       
Query: 53  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 112
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 62  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 121

                        
Query: 113 tcgggaagaagct 125
           | |||||||||||
Sbjct: 122 tggggaagaagct 134
to top
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
           insert sequence
          Length = 1691

 Score = 97.6 bits (49), Expect = 7e-18
 Identities = 67/73 (91%)
 Strand = Plus / Plus

                                                                       
Query: 53  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 112
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 61  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 120

                        
Query: 113 tcgggaagaagct 125
           | |||||||||||
Sbjct: 121 tggggaagaagct 133
to top
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
           precursor, complete cds
          Length = 1706

 Score = 97.6 bits (49), Expect = 7e-18
 Identities = 67/73 (91%)
 Strand = Plus / Plus

                                                                       
Query: 53  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 112
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 66  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 125

                        
Query: 113 tcgggaagaagct 125
           | |||||||||||
Sbjct: 126 tggggaagaagct 138
to top
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
           precursor, complete cds
          Length = 1623

 Score = 97.6 bits (49), Expect = 7e-18
 Identities = 67/73 (91%)
 Strand = Plus / Plus

                                                                       
Query: 53  agatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcc 112
           |||||||||||||||||||||||||||| || |||||||| || || |||||||||||||
Sbjct: 60  agatggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcc 119

                        
Query: 113 tcgggaagaagct 125
           | |||||||||||
Sbjct: 120 tggggaagaagct 132
to top
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B
           (RcaB) mRNA, complete cds; nuclear gene for chloroplast
           product
          Length = 1525

 Score = 67.9 bits (34), Expect = 7e-09
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                       
Query: 54  gatggctgctgccttctcctccaccgtcggggctccggcttctacgccgaccaacttcct 113
           ||||||| |||| ||||| |||||||| || |||||||| || || ||||||| ||||||
Sbjct: 25  gatggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccaccttcct 84

                     
Query: 114 cgggaagaag 123
           ||||||||||
Sbjct: 85  cgggaagaag 94
to top
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score = 61.9 bits (31), Expect = 4e-07
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                     
Query: 53     agatggctgctgccttctcctccaccgtcggggctccgg 91
              |||||||||||||||||||||||||||| || |||||||
Sbjct: 109984 agatggctgctgccttctcctccaccgttggagctccgg 109946



 Score = 44.1 bits (22), Expect = 0.097
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 100    ccgaccaacttcctcgggaagaagct 125
              |||||||||||||| |||||||||||
Sbjct: 109838 ccgaccaacttcctggggaagaagct 109813
to top
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score = 61.9 bits (31), Expect = 4e-07
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                    
Query: 53    agatggctgctgccttctcctccaccgtcggggctccgg 91
             |||||||||||||||||||||||||||| || |||||||
Sbjct: 31861 agatggctgctgccttctcctccaccgttggagctccgg 31823



 Score = 44.1 bits (22), Expect = 0.097
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 100   ccgaccaacttcctcgggaagaagct 125
             |||||||||||||| |||||||||||
Sbjct: 31715 ccgaccaacttcctggggaagaagct 31690
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 61.9 bits (31), Expect = 4e-07
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 53       agatggctgctgccttctcctccaccgtcggggctccgg 91
                |||||||||||||||||||||||||||| || |||||||
Sbjct: 28305123 agatggctgctgccttctcctccaccgttggagctccgg 28305085



 Score = 44.1 bits (22), Expect = 0.097
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 100      ccgaccaacttcctcgggaagaagct 125
                |||||||||||||| |||||||||||
Sbjct: 28304977 ccgaccaacttcctggggaagaagct 28304952
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 61.9 bits (31), Expect = 4e-07
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 53       agatggctgctgccttctcctccaccgtcggggctccgg 91
                |||||||||||||||||||||||||||| || |||||||
Sbjct: 28287572 agatggctgctgccttctcctccaccgttggagctccgg 28287534



 Score = 44.1 bits (22), Expect = 0.097
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 100      ccgaccaacttcctcgggaagaagct 125
                |||||||||||||| |||||||||||
Sbjct: 28287426 ccgaccaacttcctggggaagaagct 28287401
to top
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
           precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 58.0 bits (29), Expect = 6e-06
 Identities = 67/80 (83%), Gaps = 6/80 (7%)
 Strand = Plus / Plus

                                                                       
Query: 55  atggctgctgccttctcctccaccgtcggggctccggcttctacgccgac------caac 108
           ||||| || |||||||||||||||||||| |||||||| || || |||||      || |
Sbjct: 21  atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80

                               
Query: 109 ttcctcgggaagaagctcaa 128
           ||||||||||||||||||||
Sbjct: 81  ttcctcgggaagaagctcaa 100
to top
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 58.0 bits (29), Expect = 6e-06
 Identities = 67/80 (83%), Gaps = 6/80 (7%)
 Strand = Plus / Plus

                                                                       
Query: 55  atggctgctgccttctcctccaccgtcggggctccggcttctacgccgac------caac 108
           ||||| || |||||||||||||||||||| |||||||| || || |||||      || |
Sbjct: 21  atggcggccgccttctcctccaccgtcggagctccggcctccaccccgaccaggagcagc 80

                               
Query: 109 ttcctcgggaagaagctcaa 128
           ||||||||||||||||||||
Sbjct: 81  ttcctcgggaagaagctcaa 100
to top
>emb|CR701838.2|CNS0G4HM Tetraodon nigroviridis full-length cDNA
          Length = 929

 Score = 42.1 bits (21), Expect = 0.38
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 45  cagcacagagatggctgctgc 65
           |||||||||||||||||||||
Sbjct: 531 cagcacagagatggctgctgc 511
to top
>emb|CR686472.2|CNS0FSMS Tetraodon nigroviridis full-length cDNA
          Length = 939

 Score = 42.1 bits (21), Expect = 0.38
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 45  cagcacagagatggctgctgc 65
           |||||||||||||||||||||
Sbjct: 541 cagcacagagatggctgctgc 521
to top
>emb|CR681817.2|CNS0FP1H Tetraodon nigroviridis full-length cDNA
          Length = 992

 Score = 42.1 bits (21), Expect = 0.38
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 45  cagcacagagatggctgctgc 65
           |||||||||||||||||||||
Sbjct: 595 cagcacagagatggctgctgc 575
to top
>emb|CR680161.1|CNS0FNRH Tetraodon nigroviridis full-length cDNA
          Length = 1318

 Score = 42.1 bits (21), Expect = 0.38
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 45  cagcacagagatggctgctgc 65
           |||||||||||||||||||||
Sbjct: 932 cagcacagagatggctgctgc 912
to top
>emb|CR675309.2|CNS0FK1F Tetraodon nigroviridis full-length cDNA
          Length = 1006

 Score = 42.1 bits (21), Expect = 0.38
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 45  cagcacagagatggctgctgc 65
           |||||||||||||||||||||
Sbjct: 609 cagcacagagatggctgctgc 589
to top
>gb|AY820769.1| Homo sapiens HCV NS5A trans-regulated protein 13 mRNA, complete cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  tggctgctgccttctcctcc 75
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696
to top
>ref|NM_004741.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1 (NOLC1),
           mRNA
          Length = 2502

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  tggctgctgccttctcctcc 75
           ||||||||||||||||||||
Sbjct: 766 tggctgctgccttctcctcc 747
to top
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
          Length = 384518

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 62     ctgccttctcctccaccgtc 81
              ||||||||||||||||||||
Sbjct: 240861 ctgccttctcctccaccgtc 240842
to top
>gb|BC001883.1| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA
           clone MGC:1494 IMAGE:3533568), complete cds
          Length = 2464

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  tggctgctgccttctcctcc 75
           ||||||||||||||||||||
Sbjct: 722 tggctgctgccttctcctcc 703
to top
>ref|XM_582842.2| PREDICTED: Bos taurus similar to chromodomain helicase DNA binding
            protein 4 (LOC506402), mRNA
          Length = 7219

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 59   ctgctgccttctcctccacc 78
            ||||||||||||||||||||
Sbjct: 5008 ctgctgccttctcctccacc 4989
to top
>gb|DQ483716.1| Gymnogyps californianus clone 139F microsatellite sequence
          Length = 457

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 59 ctgctgccttctcctccacc 78
          ||||||||||||||||||||
Sbjct: 65 ctgctgccttctcctccacc 46
to top
>gb|DQ483952.1| Gymnogyps californianus clone 118G microsatellite sequence
          Length = 470

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 59 ctgctgccttctcctccacc 78
          ||||||||||||||||||||
Sbjct: 65 ctgctgccttctcctccacc 46
to top
>gb|BC006769.2| Homo sapiens nucleolar and coiled-body phosphoprotein 1, mRNA (cDNA
           clone MGC:5049 IMAGE:2900024), complete cds
          Length = 3237

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  tggctgctgccttctcctcc 75
           ||||||||||||||||||||
Sbjct: 232 tggctgctgccttctcctcc 213
to top
>emb|AL500527.19| Human DNA sequence from clone RP11-302K17 on chromosome 10 Contains the
              gene for  Hermansky-Pudlak syndrome-6 protein (HPS6), two
              pseudogenes for  transcription elongation factor B (SIII),
              polypeptide 1, the LDB1 gene for LIM domain binding 1, a
              novel gene (KIAA0595), the NOLC1 gene for nucleolar and
              coiled-body phosphoprotein 1 and five CpG islands, complete
              sequence
          Length = 158434

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     tggctgctgccttctcctcc 75
              ||||||||||||||||||||
Sbjct: 101054 tggctgctgccttctcctcc 101035
to top
>gb|BT009750.1| Synthetic construct Homo sapiens nucleolar and coiled-body
           phosphoprotein 1 mRNA, partial cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  tggctgctgccttctcctcc 75
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696
to top
>emb|CR602162.1| full-length cDNA clone CS0DI026YK04 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1812

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  tggctgctgccttctcctcc 75
           ||||||||||||||||||||
Sbjct: 717 tggctgctgccttctcctcc 698
to top
>dbj|AK056755.1| Homo sapiens cDNA FLJ32193 fis, clone PLACE6002345, highly similar
           to H.sapiens mRNA for nucleolar phosphoprotein p130
          Length = 2288

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  tggctgctgccttctcctcc 75
           ||||||||||||||||||||
Sbjct: 570 tggctgctgccttctcctcc 551
to top
>gb|AC091237.6| Mus musculus Strain C57BL7/J Chromosome 14 RP23-470F15, complete sequence
          Length = 177104

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     acagagatggctgctgcctt 68
              ||||||||||||||||||||
Sbjct: 121162 acagagatggctgctgcctt 121143
to top
>gb|AC154546.2| Mus musculus BAC clone RP23-431I7 from chromosome 16, complete sequence
          Length = 180261

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                      
Query: 32     aaggtcgaccaagcagcacagagatggctgctgccttctc 71
              |||||| |||||  ||||||| || |||||||||||||||
Sbjct: 111680 aaggtccaccaatgagcacagtgagggctgctgccttctc 111719
to top
>gb|AY891983.1| Synthetic construct Homo sapiens clone FLH024209.01L nucleolar and
           coiled-body phosphoprotein 1 (NOLC1) mRNA, partial cds
          Length = 2103

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  tggctgctgccttctcctcc 75
           ||||||||||||||||||||
Sbjct: 715 tggctgctgccttctcctcc 696
to top
>gb|AC153897.4| Mus musculus 10 BAC RP23-119E2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 209755

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    tggctgctgccttctcctcc 75
             ||||||||||||||||||||
Sbjct: 46900 tggctgctgccttctcctcc 46919
to top
>dbj|D21262.1|HUMORFGA Homo sapiens KIAA0035 mRNA, partial cds
          Length = 3727

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  tggctgctgccttctcctcc 75
           ||||||||||||||||||||
Sbjct: 708 tggctgctgccttctcctcc 689
to top
>dbj|AP003156.1| Mus musculus genomic DNA, chromosome 16q clone:RP21-56O15, complete
              sequences
          Length = 162128

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 32     aaggtcgaccaagcagcacagagatggctgctgccttctc 71
              |||||| |||||  ||||||| || |||||||||||||||
Sbjct: 108212 aaggtccaccaatgagcacagtgagggctgctgccttctc 108173
to top
>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome
          Length = 2056416

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 52     gagatggctgctgccttctcctcc 75
              ||||||||||||||||||| ||||
Sbjct: 472845 gagatggctgctgccttctgctcc 472822
to top
>emb|Z34289.1|HSNUCPP H.sapiens mRNA for nucleolar phosphoprotein p130
          Length = 2502

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 56  tggctgctgccttctcctcc 75
           ||||||||||||||||||||
Sbjct: 766 tggctgctgccttctcctcc 747
to top
>ref|XM_517512.1| PREDICTED: Pan troglodytes Rap guanine nucleotide exchange factor
            (GEF) 2 (LOC461577), mRNA
          Length = 4716

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 44   gcagcacagagatggctgctgcc 66
            ||||| |||||||||||||||||
Sbjct: 3967 gcagctcagagatggctgctgcc 3989
to top
>ref|XM_427306.1| PREDICTED: Gallus gallus similar to rab11-family interacting
           protein 4 (LOC429751), partial mRNA
          Length = 348

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 44  gcagcacagagatggctgctgcc 66
           ||||||||||| |||||||||||
Sbjct: 148 gcagcacagaggtggctgctgcc 170
to top
>gb|BC038257.1| Mus musculus cDNA clone MGC:47002 IMAGE:5148367, complete cds
          Length = 763

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 17  tccaccgttgctagcaagg 35
           |||||||||||||||||||
Sbjct: 211 tccaccgttgctagcaagg 193
to top
>ref|XM_863389.1| PREDICTED: Canis familiaris similar to Protein C14orf130, transcript
            variant 5 (LOC480419), mRNA
          Length = 1616

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 30   gcaaggtcgaccaagcagc 48
            |||||||||||||||||||
Sbjct: 1048 gcaaggtcgaccaagcagc 1066
to top
>ref|XM_863386.1| PREDICTED: Canis familiaris similar to Protein C14orf130, transcript
            variant 4 (LOC480419), mRNA
          Length = 1640

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 30   gcaaggtcgaccaagcagc 48
            |||||||||||||||||||
Sbjct: 1072 gcaaggtcgaccaagcagc 1090
to top
>ref|XM_537540.2| PREDICTED: Canis familiaris similar to Protein C14orf130, transcript
            variant 1 (LOC480419), mRNA
          Length = 1652

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 30   gcaaggtcgaccaagcagc 48
            |||||||||||||||||||
Sbjct: 1084 gcaaggtcgaccaagcagc 1102
to top
>gb|AC098721.3| Mus musculus BAC clone RP23-2O23 from 2, complete sequence
          Length = 219368

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 49     acagagatggctgctgcct 67
              |||||||||||||||||||
Sbjct: 120116 acagagatggctgctgcct 120098
to top
>emb|AL512636.12| Human DNA sequence from clone RP11-213D12 on chromosome 6 Contains part
             of a novel gene, complete sequence
          Length = 160255

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 41    caagcagcacagagatggc 59
             |||||||||||||||||||
Sbjct: 99389 caagcagcacagagatggc 99371
to top
>ref|XM_793274.1| PREDICTED: Strongylocentrotus purpuratus similar to WD repeat domain
            75 (LOC593812), mRNA
          Length = 2157

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 57   ggctgctgccttctcctcc 75
            |||||||||||||||||||
Sbjct: 1119 ggctgctgccttctcctcc 1137
to top
>emb|AL441992.17| Human DNA sequence from clone RP11-545E17 on chromosome 9 Contains the
              gene for protein kinase PKNbeta (pknbeta),  a novel gene,
              the ZDHHC12 gene for zinc finger, DHHC domain containing 12
              (ZNF400, FLJ14524), the gene for ZYG homolog, a novel gene
              (FLJ10743), the ENDOG gene for endonuclease G, a novel gene
              (HSPC109), the 3' end of the CCBL1 gene for cysteine
              conjugate-beta lyase; cytoplasmic (glutamine  transaminase
              K, kyneurenine aminotransferase) and six CpG islands,
              complete sequence
          Length = 166664

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 47     gcacagagatggctgctgc 65
              |||||||||||||||||||
Sbjct: 148084 gcacagagatggctgctgc 148102
to top
>gb|AC093244.2| Homo sapiens chromosome 5 clone RP11-113I22, complete sequence
          Length = 85927

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 53    agatggctgctgccttctc 71
             |||||||||||||||||||
Sbjct: 19863 agatggctgctgccttctc 19881
to top
>emb|CR606096.1| full-length cDNA clone CS0DK012YE05 of HeLa cells Cot 25-normalized
           of Homo sapiens (human)
          Length = 1934

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 47  gcacagagatggctgctgc 65
           |||||||||||||||||||
Sbjct: 145 gcacagagatggctgctgc 127
to top
>gb|L76557.1|SPIRBCS Spinacia oleracea chloroplast ribulose 1,5-bisphosphate carboxylase
           small subunit mRNA, complete cds
          Length = 756

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 17  tccaccgttgctagcaagg 35
           |||||||||||||||||||
Sbjct: 190 tccaccgttgctagcaagg 172
to top
>gb|AF381614.1|AF381614 Magnaporthe grisea clone BAC 14F6 gene sequence
          Length = 110467

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 49    acagagatggctgctgcct 67
             |||||||||||||||||||
Sbjct: 95060 acagagatggctgctgcct 95078
to top
>emb|BX936296.17| Mouse DNA sequence from clone RP23-27J1 on chromosome 2, complete
             sequence
          Length = 188273

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 49    acagagatggctgctgcct 67
             |||||||||||||||||||
Sbjct: 81751 acagagatggctgctgcct 81769
to top
>gb|AC068472.5|AC068472 Homo sapiens chromosome 11, clone RP11-713P14, complete sequence
          Length = 183659

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 32     aaggtcgaccaagcagcac 50
              |||||||||||||||||||
Sbjct: 152503 aaggtcgaccaagcagcac 152485
to top
>gb|AC018682.4| Homo sapiens BAC clone RP11-417F21 from 2, complete sequence
          Length = 181405

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 53    agatggctgctgccttctc 71
             |||||||||||||||||||
Sbjct: 25978 agatggctgctgccttctc 25996
to top
>gb|AC084073.22| Mus musculus strain C57BL/6J chromosome 1 clone rp23-85a8, complete
             sequence
          Length = 236834

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 50    cagagatggctgctgccttctcc 72
             ||||||||||| |||||||||||
Sbjct: 81636 cagagatggcttctgccttctcc 81658
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 77     ccgtcggggctccggcttctacg 99
              |||||| ||||||||||||||||
Sbjct: 435590 ccgtcgtggctccggcttctacg 435612
to top
>emb|BX649420.2| Zebrafish DNA sequence from clone CH211-139N7 in linkage group 20,
              complete sequence
          Length = 166858

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 41     caagcagcacagagatggc 59
              |||||||||||||||||||
Sbjct: 138450 caagcagcacagagatggc 138468
to top
>emb|BX649243.2| Zebrafish DNA sequence from clone CH211-127E19 in linkage group 20,
             complete sequence
          Length = 166766

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 41    caagcagcacagagatggc 59
             |||||||||||||||||||
Sbjct: 28409 caagcagcacagagatggc 28391
to top
>emb|X97600.1|SORBCS2 S.oleracea mRNA for ribulose-1,5-bisphosphate carboxylase
          Length = 751

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 17  tccaccgttgctagcaagg 35
           |||||||||||||||||||
Sbjct: 188 tccaccgttgctagcaagg 170
to top
>emb|X69763.1|STRBCS3 S.tuberosum rbcS3 gene for ribulose-(1,5)-bisphosphate
           carboxylase/oxygenase small subunit
          Length = 1598

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 17  tccaccgttgctagcaagg 35
           |||||||||||||||||||
Sbjct: 541 tccaccgttgctagcaagg 523
to top
>emb|CR812923.9| Zebrafish DNA sequence from clone DKEY-13G7 in linkage group 11,
             complete sequence
          Length = 146997

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 41    caagcagcacagagatggc 59
             |||||||||||||||||||
Sbjct: 36074 caagcagcacagagatggc 36092
to top
>dbj|AP003464.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-768K4, complete
              sequence
          Length = 148000

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 48     cacagagatggctgctgcc 66
              |||||||||||||||||||
Sbjct: 111967 cacagagatggctgctgcc 111985
to top
>gb|J03613.1|POTRBCS Potato (S.tuberosum) ribulose bisphosphate carboxylase (rbcS) mRNA,
           complete cds
          Length = 546

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 17  tccaccgttgctagcaagg 35
           |||||||||||||||||||
Sbjct: 162 tccaccgttgctagcaagg 144


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,007,531
Number of Sequences: 3902068
Number of extensions: 1007531
Number of successful extensions: 69908
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69702
Number of HSP's gapped (non-prelim): 204
length of query: 128
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 107
effective length of database: 17,151,101,840
effective search space: 1835167896880
effective search space used: 1835167896880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top