Clone Information

BLAST Search Result

Clone Name	baal25f05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	LTI6A_ORYSA (Q8H5T6) Hydrophobic protein LTI6A (Low temperature-...	68	7e-12
2	LTI6B_ORYSA (Q6AT93) Hydrophobic protein LTI6B (Low temperature-...	63	2e-10
3	RCI2B_ARATH (Q9ZNS6) Hydrophobic protein RCI2B (Low temperature ...	55	5e-08
4	RCI2A_ARATH (Q9ZNQ7) Hydrophobic protein RCI2A (Low temperature ...	54	8e-08
5	LT01_HORVU (P68179) Low temperature-induced protein lt101.1 (Blt...	50	2e-06
6	ESI3_LOPEL (P68178) Salt stress-induced hydrophobic peptide ESI3	50	2e-06
7	LT02_HORVU (Q9ARD5) Low temperature-induced protein lt101.2	48	6e-06
8	RC21_ARATH (Q9FE70) Hypothetical UPF0057 protein At1g57550	47	1e-05
9	OSR8_ORYSA (Q9LRI7) Hydrophobic protein OSR8	42	3e-04
10	RC24_ARATH (Q9SUI0) Hypothetical UPF0057 protein At4g30660	39	0.005
11	RC22_ARATH (O82232) Hypothetical UPF0057 protein At2g24040	39	0.005
12	RC23_ARATH (Q9M095) Hypothetical UPF0057 protein At4g30650	37	0.014
13	YCU3_CAEEL (Q22700) Hypothetical UPF0057 protein T23F2.3 in chro...	37	0.014
14	YCU4_CAEEL (Q22701) Hypothetical UPF0057 protein T23F2.4 in chro...	36	0.031
15	Y567_PSEAE (Q9I5W9) Hypothetical UPF0057 protein PA0567	35	0.069
16	SPT8_YEAST (P38915) Transcription factor SPT8	33	0.15
17	HOMEZ_MOUSE (Q80W88) Homeobox and leucine zipper protein Homez (...	33	0.26
18	RIC1_PHYIN (Q9Y068) Protein Ric1	31	0.76
19	Y1169_SYNY3 (P74805) Hypothetical UPF0057 protein ssr1169	31	0.76
20	GARP_PLAFF (P13816) Glutamic acid-rich protein precursor	30	1.7
21	NOP12_YARLI (Q6C2Q7) Nucleolar protein 12	30	1.7
22	OS9_HUMAN (Q13438) Protein OS-9 precursor (Amplified in osteosar...	30	2.2
23	NCKX1_BISBI (O46383) Sodium/potassium/calcium exchanger 1 (Na(+)...	29	2.9
24	GNL3_XENLA (Q7ZX41) Guanine nucleotide-binding protein-like 3 (N...	28	4.9
25	YTDC1_RAT (Q9QY02) YTH domain-containing protein 1 (Putative spl...	28	4.9
26	BFR2_NEUCR (Q7S6P8) Protein bfr-2	28	4.9
27	PTMA_MOUSE (P26350) Prothymosin alpha [Contains: Thymosin alpha]	28	6.4
28	PTMA_HUMAN (P06454) Prothymosin alpha [Contains: Thymosin alpha-1]	28	6.4
29	VG48_SHV21 (Q01033) Hypothetical gene 48 protein	28	6.4
30	CLSPN_XENLA (Q9DF50) Claspin (xClaspin)	28	6.4
31	POL2_RRVS (P36324) RNA2 polyprotein (P2) [Contains: P2A protein ...	28	6.4
32	IE68_PRVKA (P24827) Immediate-early protein RSP40	28	6.4
33	YCU5_CAEEL (Q22702) Hypothetical UPF0057 protein T23F2.5 in chro...	28	6.4
34	CENPB_CRIGR (P48988) Major centromere autoantigen B (Centromere ...	28	6.4
35	RNF34_RAT (Q6AYH3) RING finger protein 34 (RING finger protein M...	28	6.4
36	PTMA_PONPY (Q5R790) Prothymosin alpha [Contains: Thymosin alpha]	28	6.4
37	PTMA_BOVIN (P01252) Prothymosin alpha [Contains: Thymosin alpha-1]	28	6.4
38	PTMA_XENLA (Q5U274) Prothymosin alpha	28	6.4
39	PTMA_RAT (P06302) Prothymosin alpha [Contains: Thymosin alpha]	28	6.4
40	AN32B_HUMAN (Q92688) Acidic leucine-rich nuclear phosphoprotein ...	28	8.4
41	SET_HUMAN (Q01105) Protein SET (Phosphatase 2A inhibitor I2PP2A)...	28	8.4
42	TOM1_NEUCR (Q9P4Z1) E3 ubiquitin protein ligase TOM1-like protei...	28	8.4
43	EST1A_PONPY (Q5RAK6) Telomerase-binding protein EST1A (Ever shor...	28	8.4
44	VSI1_TRYBB (P26326) Variant surface glycoprotein ILTAT 1.21 prec...	28	8.4
45	POL2_RRVC (Q6W8W3) RNA2 polyprotein (P2) [Contains: P2A protein ...	28	8.4

>LTI6A_ORYSA (Q8H5T6) Hydrophobic protein LTI6A (Low temperature-induced protein|
           6A)
          Length = 56

 Score = 67.8 bits (164), Expect = 7e-12
 Identities = 33/50 (66%), Positives = 33/50 (66%)
 Frame = +3

Query: 72  MADEGTANCXXXXXXXXXXXXGVFFKFACGIEFWICLLXTFFGYLPGIIY 221
           MAD  TA C            GVFFKF CGIEFWICLL TFFGYLPGIIY
Sbjct: 1   MADS-TATCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIY 49

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>LTI6B_ORYSA (Q6AT93) Hydrophobic protein LTI6B (Low temperature-induced protein|
           6B)
          Length = 55

 Score = 63.2 bits (152), Expect = 2e-10
 Identities = 28/46 (60%), Positives = 29/46 (63%)
 Frame = +3

Query: 84  GTANCXXXXXXXXXXXXGVFFKFACGIEFWICLLXTFFGYLPGIIY 221
           GTANC            GVF KF CG EFWICLL TF GY+PGIIY
Sbjct: 3   GTANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIY 48

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>RCI2B_ARATH (Q9ZNS6) Hydrophobic protein RCI2B (Low temperature and|
           salt-responsive protein LTI6B)
          Length = 54

 Score = 55.1 bits (131), Expect = 5e-08
 Identities = 21/29 (72%), Positives = 24/29 (82%)
 Frame = +3

Query: 135 GVFFKFACGIEFWICLLXTFFGYLPGIIY 221
           GVF KF C +EFWICL+ T FGYLPGI+Y
Sbjct: 19  GVFLKFGCKVEFWICLILTLFGYLPGILY 47

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>RCI2A_ARATH (Q9ZNQ7) Hydrophobic protein RCI2A (Low temperature and|
           salt-responsive protein LTI6A)
          Length = 54

 Score = 54.3 bits (129), Expect = 8e-08
 Identities = 20/29 (68%), Positives = 24/29 (82%)
 Frame = +3

Query: 135 GVFFKFACGIEFWICLLXTFFGYLPGIIY 221
           GVF +F CG+EFWICL+ T  GY+PGIIY
Sbjct: 19  GVFLRFGCGVEFWICLVLTLLGYIPGIIY 47

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>LT01_HORVU (P68179) Low temperature-induced protein lt101.1 (Blt101)|
           (Blt101.1)
          Length = 54

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 19/29 (65%), Positives = 23/29 (79%)
 Frame = +3

Query: 135 GVFFKFACGIEFWICLLXTFFGYLPGIIY 221
           GVF ++  G+EFWICLL T  GY+PGIIY
Sbjct: 19  GVFLRYKLGVEFWICLLLTILGYIPGIIY 47

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>ESI3_LOPEL (P68178) Salt stress-induced hydrophobic peptide ESI3|
          Length = 54

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 19/29 (65%), Positives = 23/29 (79%)
 Frame = +3

Query: 135 GVFFKFACGIEFWICLLXTFFGYLPGIIY 221
           GVF ++  G+EFWICLL T  GY+PGIIY
Sbjct: 19  GVFLRYKLGVEFWICLLLTILGYIPGIIY 47

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>LT02_HORVU (Q9ARD5) Low temperature-induced protein lt101.2|
          Length = 54

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 18/29 (62%), Positives = 22/29 (75%)
 Frame = +3

Query: 135 GVFFKFACGIEFWICLLXTFFGYLPGIIY 221
           GVF ++   +EFWICLL T  GY+PGIIY
Sbjct: 19  GVFLRYGLAVEFWICLLLTLLGYIPGIIY 47

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>RC21_ARATH (Q9FE70) Hypothetical UPF0057 protein At1g57550|
          Length = 52

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = +3

Query: 135 GVFFKFACGIEFWICLLXTFFGYLPGIIY 221
           GVF ++  G+EFW+CLL T F ++PG+IY
Sbjct: 17  GVFLRYGLGLEFWVCLLLTLFAFIPGLIY 45

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>OSR8_ORYSA (Q9LRI7) Hydrophobic protein OSR8|
          Length = 72

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 19/30 (63%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = +3

Query: 135 GVFFKFAC-GIEFWICLLXTFFGYLPGIIY 221
           GVF +F C  +EF ICLL T  GY+PGIIY
Sbjct: 22  GVFLRFGCCSMEFCICLLLTILGYVPGIIY 51

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>RC24_ARATH (Q9SUI0) Hypothetical UPF0057 protein At4g30660|
          Length = 74

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 16/27 (59%), Positives = 19/27 (70%)
 Frame = +3

Query: 141 FFKFACGIEFWICLLXTFFGYLPGIIY 221
           F K  C +EF ICL+ T  GY+PGIIY
Sbjct: 24  FRKGCCTVEFLICLVLTILGYVPGIIY 50

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>RC22_ARATH (O82232) Hypothetical UPF0057 protein At2g24040|
          Length = 75

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 15/22 (68%), Positives = 18/22 (81%)
 Frame = +3

Query: 156 CGIEFWICLLXTFFGYLPGIIY 221
           C +EF+ICL+ T  GYLPGIIY
Sbjct: 29  CTVEFFICLILTCLGYLPGIIY 50

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>RC23_ARATH (Q9M095) Hypothetical UPF0057 protein At4g30650|
          Length = 73

 Score = 37.0 bits (84), Expect = 0.014
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = +3

Query: 156 CGIEFWICLLXTFFGYLPGIIY 221
           C +EF ICL+ T  GY+PGIIY
Sbjct: 29  CTVEFLICLVLTILGYIPGIIY 50

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>YCU3_CAEEL (Q22700) Hypothetical UPF0057 protein T23F2.3 in chromosome X|
          Length = 57

 Score = 37.0 bits (84), Expect = 0.014
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +3

Query: 135 GVFFKFACGIEFWICLLXTFFGYLPGIIY 221
           GVF +  C     IC+L T  GY+PGIIY
Sbjct: 21  GVFLEKGCDYHLAICILLTILGYIPGIIY 49

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>YCU4_CAEEL (Q22701) Hypothetical UPF0057 protein T23F2.4 in chromosome X|
          Length = 57

 Score = 35.8 bits (81), Expect = 0.031
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +3

Query: 135 GVFFKFACGIEFWICLLXTFFGYLPGIIY 221
           GVF +  C     IC+L T  GY+PGIIY
Sbjct: 21  GVFLEKGCTHHLAICILLTILGYIPGIIY 49

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>Y567_PSEAE (Q9I5W9) Hypothetical UPF0057 protein PA0567|
          Length = 52

 Score = 34.7 bits (78), Expect = 0.069
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 135 GVFFKFACGIEFWICLLXTFFGYLPGIIY 221
           GVF +   G  FW+ +L T  GY+PGI++
Sbjct: 16  GVFLQVGFGGAFWLNILLTLLGYIPGIVH 44

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>SPT8_YEAST (P38915) Transcription factor SPT8|
          Length = 602

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = -2

Query: 218 DDAGXVAEEGXQQADPELDPAGELEEDAERRQDDGEDD---VDAVGRPLVRH 72
           DD G   E+     + + D   E E+D E+  DDGEDD   +D    P   H
Sbjct: 39  DDGGEDEEDDDDDDEDDDDDEDEREDDDEQEDDDGEDDAARMDKTATPTNEH 90

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>HOMEZ_MOUSE (Q80W88) Homeobox and leucine zipper protein Homez (Homeodomain|
           leucine zipper-containing factor)
          Length = 518

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -2

Query: 197 EEGXQQADPELDPAGELEEDAERRQDDGEDDV 102
           EE  +  + EL   GE EE+ E   DDG+DDV
Sbjct: 483 EEDEEDEEDELPEDGEEEEEEEEDDDDGDDDV 514

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>RIC1_PHYIN (Q9Y068) Protein Ric1|
          Length = 57

 Score = 31.2 bits (69), Expect = 0.76
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 135 GVFFKFACGIEFWICLLXTFFGYLPGIIY 221
           GVFF+  C  +  I  L T  GY+PG+I+
Sbjct: 21  GVFFQVGCTKDLAINCLLTVLGYIPGVIH 49

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>Y1169_SYNY3 (P74805) Hypothetical UPF0057 protein ssr1169|
          Length = 54

 Score = 31.2 bits (69), Expect = 0.76
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 135 GVFFKFACGIEFWICLLXTFFG-YLPGIIY 221
           GVF +   G +FWI LL T FG Y+ G+++
Sbjct: 16  GVFLQVGIGKDFWINLLLTIFGLYILGLVH 45

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>GARP_PLAFF (P13816) Glutamic acid-rich protein precursor|
          Length = 678

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 197 EEGXQQADPELDPAGELEEDAERRQDDGEDDVD 99
           EE  ++ + E D   E E+DAE  +DD E+D D
Sbjct: 595 EEEEEEEEEEEDEDEEDEDDAEEDEDDAEEDED 627



 Score = 29.6 bits (65), Expect = 2.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 197 EEGXQQADPELDPAGELEEDAERRQDDGEDDVD 99
           EE   + + + D A E E+DAE  +DD E+D D
Sbjct: 602 EEEEDEDEEDEDDAEEDEDDAEEDEDDAEEDDD 634



 Score = 27.7 bits (60), Expect = 8.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 197 EEGXQQADPELDPAGELEEDAERRQDDGEDD 105
           EE    A+ + D A E E+DAE   D+ +DD
Sbjct: 609 EEDEDDAEEDEDDAEEDEDDAEEDDDEEDDD 639

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>NOP12_YARLI (Q6C2Q7) Nucleolar protein 12|
          Length = 509

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -2

Query: 197 EEGXQQADPELDPAGELEEDAERRQDDGEDDVDAVGRPLVRHLPSLVSKQSK 42
           +E   + D E D   E +E+ +   DD +DD + +  P+++   S  +K+SK
Sbjct: 49  DEEEDEEDEEEDEEDEEDEEEKEEDDDDDDDEEEIEEPVIK--KSKKNKKSK 98

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>OS9_HUMAN (Q13438) Protein OS-9 precursor (Amplified in osteosarcoma 9)|
          Length = 667

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -2

Query: 221 VDDAGXVA--EEGXQQADPELDPAGELEEDAERRQDDGEDDVDAVG 90
           VDDA  V   E   ++ DPE     E EED +  +D+ ED+   +G
Sbjct: 389 VDDAAEVPQREPEKERGDPERQREMEEEEDEDEDEDEDEDERQLLG 434

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>NCKX1_BISBI (O46383) Sodium/potassium/calcium exchanger 1|
           (Na(+)/K(+)/Ca(2+)-exchange protein 1) (Retinal rod
           Na-Ca+K exchanger) (Fragment)
          Length = 300

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -2

Query: 218 DDAGXVAEEGXQQADPELDPAGELEEDAERRQDDGEDDVDAVGRPLVRHLPSLVSKQS 45
           D+ G   E G    D E +   + EED E  +++ E++ +   +PL    P    KQ+
Sbjct: 202 DEEGVDGEGGGDGGDSEDEEEEDEEEDEEEEEEEEEEEEEENEQPLSLEWPETRRKQA 259

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>GNL3_XENLA (Q7ZX41) Guanine nucleotide-binding protein-like 3|
           (Nucleostemin-like protein)
          Length = 542

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = -2

Query: 221 VDDAGXVAEEGXQQADPELDPAGELEEDAERRQDD---GEDDVDAVGRPLVRHLPSLVSK 51
           VD    + EE  ++ D      GE EED E  +DD    E++ D   + L + + S   K
Sbjct: 462 VDPEPELIEEELEEND------GEEEEDMEEEEDDDEGSEEEEDLEAKSLTQEVTSAKEK 515

Query: 50  QSK 42
            SK
Sbjct: 516 DSK 518

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>YTDC1_RAT (Q9QY02) YTH domain-containing protein 1 (Putative splicing factor|
           YT521) (RA301-binding protein)
          Length = 738

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 218 DDAGXVAEEGXQQADPELDPAGELEEDAERRQDDGEDD 105
           ++ G    E  ++ D + D   E++EDAE  +D+ ED+
Sbjct: 201 EEGGEEDVEEDEEVDEDGDDDEEVDEDAEEEEDEEEDE 238

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>BFR2_NEUCR (Q7S6P8) Protein bfr-2|
          Length = 636

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 212 AGXVAEEGXQQADPELDPAGELEEDAERRQDDGEDDVD 99
           +G   EEG  + D E D  G  +ED +   +D ++D D
Sbjct: 252 SGSDDEEGDSEEDDEDDEEGSGDEDEDEDDEDEDEDED 289

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>PTMA_MOUSE (P26350) Prothymosin alpha [Contains: Thymosin alpha]|
          Length = 110

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
 Frame = -2

Query: 197 EEGXQQADPELD----PAGELEEDAER---RQDDGEDDVDA 96
           E G Q+AD E+D      GE EE+ E     ++DG++D +A
Sbjct: 42  ENGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEA 82

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>PTMA_HUMAN (P06454) Prothymosin alpha [Contains: Thymosin alpha-1]|
          Length = 110

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
 Frame = -2

Query: 197 EEGXQQADPELD----PAGELEEDAER---RQDDGEDDVDA 96
           E G Q+AD E+D      GE EE+ E     ++DG++D +A
Sbjct: 42  ENGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEA 82

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>VG48_SHV21 (Q01033) Hypothetical gene 48 protein|
          Length = 797

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 218 DDAGXVAEEGXQQADPELDPAGELEEDAERRQDDGEDDVD 99
           +D G   +EG  + D   D   E E++ +  +D+G++  D
Sbjct: 606 EDEGDEGDEGEDEGDEGEDEGDEGEDEGDEGEDEGDEGED 645

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>CLSPN_XENLA (Q9DF50) Claspin (xClaspin)|
          Length = 1285

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -2

Query: 197 EEGXQQADPELDPAGELEEDAERRQDDGEDDVDAVGRPLVRHLPSLV 57
           ++G   A+    P GE EE+    +DD ++D D V   L+ ++P +V
Sbjct: 621 DDGDGNAETADYPGGEDEEEVGDAEDDNDED-DTVNDRLLGNVPEIV 666

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>POL2_RRVS (P36324) RNA2 polyprotein (P2) [Contains: P2A protein (2A);|
           Movement protein (2B-MP); Coat protein (2C-CP)]
          Length = 1107

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 176 DPELDPAGELEEDAERRQD--DGEDDVDAVG 90
           D  L+P G+ + D E RQD  D +D + ++G
Sbjct: 221 DHHLEPTGDRQADKEARQDYADSQDSIQSMG 251

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>IE68_PRVKA (P24827) Immediate-early protein RSP40|
          Length = 364

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
 Frame = -2

Query: 218 DDAGXVAEEGXQQADPELDPAGELEEDAERRQ-----DDGEDDVDAVG 90
           DD G   +E   + + E +  GE EED E        +DGE+D D  G
Sbjct: 293 DDGGDGEDEDEDEDEDEDEDDGEDEEDEEGEDGGEDGEDGEEDEDEDG 340

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>YCU5_CAEEL (Q22702) Hypothetical UPF0057 protein T23F2.5 in chromosome X|
          Length = 57

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 135 GVFFKFACGIEFWICLLXTFFGYLPGIIY 221
           GV+ +  C     I +L T  GY+PGII+
Sbjct: 21  GVWLEKGCTYHLAINILLTILGYIPGIIH 49

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>CENPB_CRIGR (P48988) Major centromere autoantigen B (Centromere protein B)|
           (CENP-B)
          Length = 606

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 194 EGXQQADPELDPAGELEEDAERRQDDGEDDVD 99
           EG + +D + D   E EE+ E  ++D +DD D
Sbjct: 511 EGGEDSDSDSDEEEEDEEEDEEDEEDDDDDED 542

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>RNF34_RAT (Q6AYH3) RING finger protein 34 (RING finger protein MOMO)|
          Length = 381

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -2

Query: 221 VDDAGXVAEEGXQQADPELDPAGELEEDAERRQDDGEDDVD 99
           +D  G    E   Q   EL  A   +ED E   DD +DD D
Sbjct: 198 MDREGTFRSEVLTQVQSELASANTDDEDGEEDDDDDDDDDD 238

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>PTMA_PONPY (Q5R790) Prothymosin alpha [Contains: Thymosin alpha]|
          Length = 109

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
 Frame = -2

Query: 197 EEGXQQADPELD----PAGELEEDAER---RQDDGEDDVDA 96
           E G Q+AD E+D      GE EE+ E     ++DG++D +A
Sbjct: 41  ENGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEA 81

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>PTMA_BOVIN (P01252) Prothymosin alpha [Contains: Thymosin alpha-1]|
          Length = 109

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
 Frame = -2

Query: 197 EEGXQQADPELD----PAGELEEDAER---RQDDGEDDVDA 96
           E G Q+AD E+D      GE EE+ E     ++DG++D +A
Sbjct: 41  ENGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEA 81

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>PTMA_XENLA (Q5U274) Prothymosin alpha|
          Length = 111

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
 Frame = -2

Query: 197 EEGXQQADPELD----PAGELEEDAER---RQDDGEDDVDA 96
           E G Q+AD E+D      GE EE+ E     ++DG++D +A
Sbjct: 43  ENGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEA 83

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>PTMA_RAT (P06302) Prothymosin alpha [Contains: Thymosin alpha]|
          Length = 111

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
 Frame = -2

Query: 197 EEGXQQADPELD----PAGELEEDAER---RQDDGEDDVDA 96
           E G Q+AD E+D      GE EE+ E     ++DG++D +A
Sbjct: 42  ENGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEA 82

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>AN32B_HUMAN (Q92688) Acidic leucine-rich nuclear phosphoprotein 32 family|
           member B (PHAPI2 protein) (Silver-stainable protein
           SSP29) (Acidic protein rich in leucines)
          Length = 251

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 197 EEGXQQADPELDPAGELEEDAERRQDDGEDDVD 99
           ++    +D E+D   E EED E   ++ EDD D
Sbjct: 152 DQEAPDSDAEVDGVDEEEEDEEGEDEEDEDDED 184

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>SET_HUMAN (Q01105) Protein SET (Phosphatase 2A inhibitor I2PP2A) (I-2PP2A)|
           (Template-activating factor I) (TAF-I)
           (HLA-DR-associated protein II) (PHAPII) (Inhibitor of
           granzyme A-activated DNase) (IGAAD)
          Length = 290

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -2

Query: 218 DDAGXVAEEGXQQADPELD-PAGELEED----AERRQDDGEDD 105
           DD     EEG +  D E D   GE +ED     E  +D+GEDD
Sbjct: 248 DDDDDEEEEGLEDIDEEGDEDEGEEDEDDDEGEEGEEDEGEDD 290

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>TOM1_NEUCR (Q9P4Z1) E3 ubiquitin protein ligase TOM1-like protein (EC 6.3.2.-)|
          Length = 4065

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 185  QQADPELDPAGELEEDAERRQDDGEDDVDAVG 90
            +Q D ELD   ++ +D E    D EDD+  +G
Sbjct: 2421 EQYDDELDYGDDMSQDNEDNPSDEEDDLGEMG 2452

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>EST1A_PONPY (Q5RAK6) Telomerase-binding protein EST1A (Ever shorter telomeres 1A)|
            (Telomerase subunit EST1A) (EST1-like protein A)
          Length = 1419

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 203  VAEEGXQQADPELDPAGE-LEEDAERRQDDGEDDV 102
            V++EG +  D E D   E  EED+E     GEDD+
Sbjct: 1168 VSQEGTRLEDEEEDVVIEDFEEDSEAEGSGGEDDI 1202

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>VSI1_TRYBB (P26326) Variant surface glycoprotein ILTAT 1.21 precursor (VSG)|
          Length = 471

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 212 AGXVAEEGXQQADPELDPAGELEEDAERRQDDGEDDVD 99
           AG    E  + A    DPAG ++E A  R+  G DD +
Sbjct: 362 AGQAKREYRRPAGSLKDPAGVIQEQATNRRRHGADDTN 399

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>POL2_RRVC (Q6W8W3) RNA2 polyprotein (P2) [Contains: P2A protein (2A);|
           Movement protein (2B-MP); Coat protein (2C-CP)]
          Length = 1106

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -2

Query: 176 DPELDPAGELEEDAERRQD--DGEDDVDAVG 90
           D  L P G+ + D E RQD  D +D + ++G
Sbjct: 220 DHHLQPTGDRQADKEERQDYADSQDSIQSMG 250


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,415,814
Number of Sequences: 219361
Number of extensions: 182126
Number of successful extensions: 1944
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 1470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1826
length of database: 80,573,946
effective HSP length: 49
effective length of database: 69,825,257
effective search space used: 1675806168
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result