ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal25e08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UL53_HCMVA (P16794) Protein UL53 (HFRF2 protein) 30 1.9
2PTPRG_MOUSE (Q05909) Receptor-type tyrosine-protein phosphatase ... 28 4.2
3PTPRG_HUMAN (P23470) Receptor-type tyrosine-protein phosphatase ... 28 5.5
4C12A5_DROME (Q9VE01) Probable cytochrome P450 12a5, mitochondria... 28 5.5
5C12A4_DROME (Q9VE00) Probable cytochrome P450 12a4, mitochondria... 28 5.5
6CAC1G_RAT (O54898) Voltage-dependent T-type calcium channel alph... 27 9.4
7DLX5_RAT (P50575) Homeobox protein DLX-5 (DLX-3) (RDLX) 27 9.4
8DLX5_MOUSE (P70396) Homeobox protein DLX-5 27 9.4
9DLX5_HUMAN (P56178) Homeobox protein DLX-5 27 9.4

>UL53_HCMVA (P16794) Protein UL53 (HFRF2 protein)|
          Length = 376

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 119 GCPPSARSSSHQPHACPPSSALEWNPY 199
           GC PS+ S S  PH  PPS A + + Y
Sbjct: 321 GCGPSSSSQSTPPHLHPPSQATQPHHY 347



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>PTPRG_MOUSE (Q05909) Receptor-type tyrosine-protein phosphatase gamma precursor|
           (EC 3.1.3.48) (Protein-tyrosine phosphatase gamma)
           (R-PTP-gamma)
          Length = 1442

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -2

Query: 339 HPVRGRRAPAKFQILFYN*VPDRPDA 262
           H V GRR P + QI FYN  PD  D+
Sbjct: 163 HSVNGRRFPVEMQIFFYN--PDDFDS 186



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>PTPRG_HUMAN (P23470) Receptor-type tyrosine-protein phosphatase gamma precursor|
           (EC 3.1.3.48) (Protein-tyrosine phosphatase gamma)
           (R-PTP-gamma)
          Length = 1445

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 339 HPVRGRRAPAKFQILFYN*VPDRPDA 262
           H + GRR P + QI FYN  PD  D+
Sbjct: 163 HSINGRRFPVEMQIFFYN--PDDFDS 186



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>C12A5_DROME (Q9VE01) Probable cytochrome P450 12a5, mitochondrial precursor (EC|
           1.14.-.-) (CYPXIIA5)
          Length = 536

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 137 RSSSHQPHACPPSSALEWNPYVFLPMGNG 223
           R++S     CP +     NP+VFLP G G
Sbjct: 450 RNASDSAGKCPANDLKTKNPFVFLPFGFG 478



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>C12A4_DROME (Q9VE00) Probable cytochrome P450 12a4, mitochondrial precursor (EC|
           1.14.-.-) (CYPXIIA4)
          Length = 536

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 137 RSSSHQPHACPPSSALEWNPYVFLPMGNG 223
           RS       CP +     NP+VFLP G G
Sbjct: 450 RSPKDSESKCPANELKSTNPFVFLPFGFG 478



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>CAC1G_RAT (O54898) Voltage-dependent T-type calcium channel alpha-1G subunit|
            (Voltage-gated calcium channel alpha subunit Cav3.1)
          Length = 2254

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 122  CPPSARSSSHQPHACPPS 175
            CPPSARSS H P +   S
Sbjct: 1064 CPPSARSSPHSPWSAASS 1081



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>DLX5_RAT (P50575) Homeobox protein DLX-5 (DLX-3) (RDLX)|
          Length = 289

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 131 SARSSSHQPHACPPSS 178
           S+RS SH PHA PP+S
Sbjct: 229 SSRSLSHHPHAHPPTS 244



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>DLX5_MOUSE (P70396) Homeobox protein DLX-5|
          Length = 289

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 131 SARSSSHQPHACPPSS 178
           S+RS SH PHA PP+S
Sbjct: 229 SSRSLSHHPHAHPPTS 244



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>DLX5_HUMAN (P56178) Homeobox protein DLX-5|
          Length = 289

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 131 SARSSSHQPHACPPSS 178
           S+RS SH PHA PP+S
Sbjct: 229 SSRSLSHHPHAHPPTS 244


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,941,926
Number of Sequences: 219361
Number of extensions: 781541
Number of successful extensions: 2262
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2259
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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