>YL086_MIMIV (Q5UPG0) Putative ankyrin repeat protein L86|
          Length = 576

 Score = 33.5 bits (75), Expect = 0.58
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
 Frame = +2

Query: 59  QRSVANGASAVYQNENFDQLLGHTSGLATSSSIGLSNPDLTVNMFGNGT------FKDGL 220
           Q  +  GA+  +QN+  D +L H+ G   +SS+  +N D+   +  N T       K   
Sbjct: 136 QLLIEYGANVNFQNDFGDSILNHSGGFILNSSLQYNNFDIIKILLDNNTNPNISNNKGNT 195

Query: 221 LQRDVPVFNQHNIICSDV 274
           L  ++ ++NQ    C D+
Sbjct: 196 LLHNICIYNQS---CDDI 210

>TYDP1_HUMAN (Q9NUW8) Tyrosyl-DNA phosphodiesterase 1 (EC 3.1.4.-) (Tyr-DNA|
           phosphodiesterase 1)
          Length = 608

 Score = 33.1 bits (74), Expect = 0.76
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +2

Query: 386 DDMPSCIPSSRPIPQVEMAAEEQHHAIMSSEKDDDAKSDGPELANEEHGDKA 541
           +D+  C+ SS    Q EM  ++    ++  EKD  A +DG     E HG  A
Sbjct: 83  EDLGWCLSSSDDELQPEMPQKQAEKVVIKKEKDISAPNDGTAQRTENHGAPA 134

>HSP74_HUMAN (P34932) Heat shock 70 kDa protein 4 (Heat shock 70-related protein|
            APG-2) (HSP70RY)
          Length = 840

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
 Frame = +2

Query: 287  SDRATINNEDMILKGRMHNNFQMEARVIVEDVTDDMPSCIPS-SRPIPQVEMAAEEQHHA 463
            +++  + N+  +    +  + ++EA++  +++T    +C P  S+P P+VE   EEQ +A
Sbjct: 746  NNKLNLQNKQSLTMDPVVKSKEIEAKI--KELTS---TCSPIISKPKPKVEPPKEEQKNA 800

Query: 464  IMSSEKDDDAKSDGPELANEEHGDKAAADGSISDAEIAELE 586
              +   D    + GP+ A  E G   A   S SD ++ E++
Sbjct: 801  EQNGPVDGQGDNPGPQAA--EQGTDTAVP-SDSDKKLPEMD 838

>PRL_CEREL (Q6UC74) Prolactin precursor (PRL)|
          Length = 229

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
 Frame = +2

Query: 323 LKGRMHNNFQMEARVIVEDVTDDMPSCIPSSRPIPQVEMAAEEQHHAIMSSEKDDDAKS- 499
           L   M N F          +T  + SC  SS P P+ +  A++ HH ++ S      +S 
Sbjct: 62  LSSEMFNEFDKRYAQGKGFITMALNSCHTSSLPTPEDKEQAQQTHHEVLMSLILGLLRSW 121

Query: 500 DGP--ELANEEHGDKAAADGSISDA-EIAE 580
           + P   L  E  G K A DG +S A EI E
Sbjct: 122 NDPLYHLVTEVRGMKGAPDGILSRAIEIEE 151

>DNAK_GLUOX (Q5FSL5) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 634

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +2

Query: 389 DMPSCIPSSRPIPQVEMAAEEQHHAIMSSEKDDDAKSDGPELANEEHGDKAAADGSISDA 568
           D+    P+ R +PQ+E+  +   + I++    D A        N+E   K  A G +SDA
Sbjct: 453 DLQGIAPAPRGVPQIEVTFDIDANGIVNVSAKDKA-------TNKEQQIKIQASGGLSDA 505

Query: 569 EI 574
           +I
Sbjct: 506 DI 507

>CADN_DROME (O15943) Neural-cadherin precursor (Cadherin-N protein) (DN-cadherin)|
          Length = 3097

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +2

Query: 365  VIVEDVTDDMPSCIPSSRPIPQVEMAAEEQHHAIMSSEKDDDAKSDGP 508
            VIV+D+ D+ P  +   RP+   E     +   I++++ DD +KS+GP
Sbjct: 1954 VIVQDINDNAPKFLKDYRPV-LPEHVPPRKVVEILATDDDDRSKSNGP 2000

>TMEM1_HUMAN (P48553) Transmembrane protein 1 (Epilepsy holoprosencephaly|
            candidate 1 protein) (EHOC-1) (GT334 protein)
          Length = 1259

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 419  PIPQVEMAAEEQHHAIMSSEKDDDAKSDGPELANEEHGDKAAADGSI 559
            P+P V +     HH+  SS+ D D+  +   L+ ++HGD      S+
Sbjct: 1158 PLPDVRLFKYLPHHSAHSSQLDADSWIENDSLSVDKHGDDQPDSSSL 1204

>KLP1_SCHPO (Q92376) Kinesin-like protein 1|
          Length = 832

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 19/161 (11%)
 Frame = +2

Query: 206 FKDGLLQRDVPVFNQHNIICSDVGVIGSDRATINNEDMI----LKGRMHNNFQMEA---- 361
           FK+  L +   +   H  IC       SD+A  ++  +     LK +  N  Q+E     
Sbjct: 98  FKESWLPQLKDLIESHKTICESTLAYESDQAMASSNTLKRIKDLKSKPKNIIQLERLHML 157

Query: 362 -----RVIVEDVTDDMPSCIPSSRPIPQV--EMAAEEQHHAIMSSEKDDDAKSDGPELAN 520
                R++ +D TDD+ S   + R   QV  ++ AE+ H   +  +   +A     +   
Sbjct: 158 SNGEHRLLSKDETDDIESAYLNLRSHLQVQEQVYAEKDHEYSLQLQSYREAAEKAKQDIL 217

Query: 521 EEHGDKAAADGSISDAEIAE----LEASMYGLQIIRNADLE 631
           E   +  +++ SIS+ ++ E    LEA+    Q +R    E
Sbjct: 218 ETK-ENLSSELSISNIQLKEAKERLEAANASYQKLRREHKE 257

>Y4401_ERWCT (Q6CYV4) Putative transport protein ECA4401|
          Length = 552

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 176 LTVNMFGNGTFKDGLLQRDVPVFNQHNIICS 268
           LT+N+    T   GL  +DVP+ N+  I+CS
Sbjct: 205 LTINVSVTNTNLQGLAIQDVPILNRDTIVCS 235

>CD2AP_HUMAN (Q9Y5K6) CD2-associated protein (Cas ligand with multiple SH3|
           domains) (Adapter protein CMS)
          Length = 639

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
 Frame = +2

Query: 200 GTFKDGLLQRDVPVFNQHNIICSDVGVIGSDRATINNEDMILKGRMHNNFQMEARVIVED 379
           GT +D L  ++  + +   +I  + G  G  R  +N ++    G   +NF ++   + +D
Sbjct: 282 GTNEDELTFKEGEIIH---LISKETGEAGWWRGELNGKE----GVFPDNFAVQINELDKD 334

Query: 380 VTDDMPSCIPSSRPIPQVEM-AAEEQHHAIMSSEKDD 487
                    P+  P P+ E+ AAE+++ ++   EKD+
Sbjct: 335 FPKPKKPPPPAKAPAPKPELIAAEKKYFSLKPEEKDE 371

>DNAK_RHIME (P42374) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 641

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +2

Query: 389 DMPSCIPSSRPIPQVEMAAEEQHHAIMSSEKDDDAKSDGPELANEEHGDKAAADGSISDA 568
           D+    P+ R +PQ+E+  +   + I+     D           +EH  +  A G +SDA
Sbjct: 453 DLVGIPPAPRGVPQIEVTFDIDANGIVQVSAKDKG-------TGKEHQIRIQASGGLSDA 505

Query: 569 EIAEL 583
           EI ++
Sbjct: 506 EIEKM 510

>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor|
          Length = 351

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 18/53 (33%), Positives = 20/53 (37%)
 Frame = -3

Query: 641 HVAPRGQHFL*SASHTCWLQVRQSQHH*WTHPQLLYHHAPH*LTLAHRS*HHH 483
           H AP   H    A H          HH   H    +HHAPH     H + HHH
Sbjct: 171 HHAPHHHHHHHHAPH------HHHHHHHAPHHHHHHHHAPHHHHHHHHAPHHH 217



 Score = 29.6 bits (65), Expect = 8.3
 Identities = 18/53 (33%), Positives = 19/53 (35%)
 Frame = -3

Query: 641 HVAPRGQHFL*SASHTCWLQVRQSQHH*WTHPQLLYHHAPH*LTLAHRS*HHH 483
           H AP   H    A H          HH   H    +HHAPH     H   HHH
Sbjct: 181 HHAPHHHHHHHHAPH------HHHHHHHAPHHHHHHHHAPHHHHHHHHGHHHH 227

>MUTL_CLOPE (Q8XL86) DNA mismatch repair protein mutL|
          Length = 674

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 20/91 (21%)
 Frame = +2

Query: 155 IGLSNPDLTVNMFGN-----GTFKDGLL------------QRDVPVFNQHNIICSDVGVI 283
           I L+NPD++  +F N      T+ +G L              ++  F +H    S  G I
Sbjct: 178 ISLANPDVSFKLFNNNKKILNTYGNGKLIDVIRTIYGKSTAENLIYFEEHKDTASVYGFI 237

Query: 284 GSD---RATINNEDMILKGRMHNNFQMEARV 367
           G+D   RA+ NN+ + +  R   N  +   V
Sbjct: 238 GNDTLARASRNNQSLFVNKRYVKNRSLTVAV 268

>SLAP_BACSH (P38537) Surface-layer 125 kDa protein precursor|
          Length = 1176

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
 Frame = +2

Query: 350 QMEARVIVEDVTDDMPSCIPSSRPIPQVEMAAEEQHHAIMSSEKDDDAKSDGPELANEEH 529
           + +  V  E   D     + S + I  V +AA+ +   +  ++K ++ K+D   ++N + 
Sbjct: 289 EFDGTVDKETAEDAANYALKSGKTIKSVSLAADNKTATVTLTDKLNNNKADAISISNVKA 348

Query: 530 GDKAA----ADGSISDAEIAEL-EASMYGLQIIRNADLEELRELGSGTF 661
           GDK       + +  D +I E+ E    G + ++    E +  L S  F
Sbjct: 349 GDKEINVKNVEFTAVDNKIPEVTEVKSLGTKAVKVTLSEPVENLSSTNF 397

>DNAK_CAUCR (P20442) Chaperone protein dnaK (Heat shock protein 70) (Heat shock|
           70 kDa protein) (HSP70)
          Length = 631

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +2

Query: 428 QVEMAAEEQHHAIMSSEKDDDAKSDGPELANEEHGDK-AAADGSISDAEIAELEASMYG 601
           +   AA+E+   ++ ++   +A     E A  EHGDK  AA+ +  +  I EL+ ++ G
Sbjct: 515 EANKAADEKKKQLVEAKNQGEAILHSTEKALAEHGDKVGAAEKTAIETGITELKTALEG 573

>CO6A3_CHICK (P15989) Collagen alpha-3(VI) chain precursor|
          Length = 3137

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +2

Query: 506  PELANEEHGDKAAADGSISDAEIAELEASMYGLQIIRNADLEELRELGS 652
            P++A    G K++ DG  +  E+A+    ++ + + RN DLEE+ +L S
Sbjct: 1746 PQIAFIITGGKSSDDGQGASMEVAQKGVKVFAVGV-RNIDLEEVSKLAS 1793

>STNB_CAEEL (P90761) Putative stoned B-like protein (Unc-41)|
          Length = 1657

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
 Frame = +2

Query: 302 INNEDMILKGRMHNNFQMEARVIVEDVTDDMPSCIPSSRPIPQVEMAAEEQHHAIMSSEK 481
           I + D   +G  H+N   E +V+ E+  DD+P+         Q  M  +E   +++ +E 
Sbjct: 301 ITSPDAPHQGAFHDNTPKEPKVVEEEEDDDLPTFSEDMDEARQQVM--KEMTESVVKTEN 358

Query: 482 DDDAKSDGPELA--NEEHGDK---AAADGS 556
            ++ K +   ++  + E+G +   A  DGS
Sbjct: 359 VENEKQEDTHISEGHVEYGTEESPAVTDGS 388


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,022,107
Number of Sequences: 219361
Number of extensions: 2104032
Number of successful extensions: 5831
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5809
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6314008338
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)