ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal25d01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469328.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1425 Score = 325 bits (164), Expect = 5e-86 Identities = 293/336 (87%) Strand = Plus / Plus Query: 8 gaagcgtcgacccatcactatggctaatgaactcaatgccttccctgctggtacgtgagc 67 ||||||| |||||||| |||||||||||||| |||||||| ||| ||||||| ||||| | Sbjct: 533 gaagcgttgacccatcgctatggctaatgaattcaatgccatccttgctggtccgtgaac 592 Query: 68 aggccatattactcaaccttggttccttgcgagcaattgctatgcatgagcgtgtcctta 127 | ||||||||| | || |||||||||||||||||||||||||||||||| || || |||| Sbjct: 593 aagccatattagtaaatcttggttccttgcgagcaattgctatgcatgaacgcgttctta 652 Query: 128 tattcaattataacagcccaggaggaaaggcctttttagagctattacgaccccggttaa 187 |||||||||| ||||||||||||||||||||||| ||||| ||||| || ||||||| Sbjct: 653 tattcaattacaacagcccaggaggaaaggccttcttagattcattactgccacggttaa 712 Query: 188 atccaaggaacatcaatggtgggcctgcgatgccttttcaactcgaggttgttgaagcag 247 ||||||| || ||||||||||| || || ||||| |||||||| |||||||| ||||| | Sbjct: 713 atccaagaaatatcaatggtggaccagcaatgccatttcaacttgaggttgtcgaagctg 772 Query: 248 cactgctttctagaatacaaaggctggaacaaagattaatgcatgtcgaacctcgtgtgg 307 | ||||||||||||||||||||| |||| | ||| |||||| | |||| |||||||||| Sbjct: 773 ccctgctttctagaatacaaaggttggagcgaaggctaatgcgtatcgagcctcgtgtgg 832 Query: 308 ctgcattgcttgaagttctaccaaatcggctgacag 343 ||| |||||||||||||||||||||||| |||||| Sbjct: 833 gtgctttgcttgaagttctaccaaatcggttgacag 868
>dbj|AK100086.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003B15, full insert sequence Length = 1922 Score = 325 bits (164), Expect = 5e-86 Identities = 293/336 (87%) Strand = Plus / Plus Query: 8 gaagcgtcgacccatcactatggctaatgaactcaatgccttccctgctggtacgtgagc 67 ||||||| |||||||| |||||||||||||| |||||||| ||| ||||||| ||||| | Sbjct: 702 gaagcgttgacccatcgctatggctaatgaattcaatgccatccttgctggtccgtgaac 761 Query: 68 aggccatattactcaaccttggttccttgcgagcaattgctatgcatgagcgtgtcctta 127 | ||||||||| | || |||||||||||||||||||||||||||||||| || || |||| Sbjct: 762 aagccatattagtaaatcttggttccttgcgagcaattgctatgcatgaacgcgttctta 821 Query: 128 tattcaattataacagcccaggaggaaaggcctttttagagctattacgaccccggttaa 187 |||||||||| ||||||||||||||||||||||| ||||| ||||| || ||||||| Sbjct: 822 tattcaattacaacagcccaggaggaaaggccttcttagattcattactgccacggttaa 881 Query: 188 atccaaggaacatcaatggtgggcctgcgatgccttttcaactcgaggttgttgaagcag 247 ||||||| || ||||||||||| || || ||||| |||||||| |||||||| ||||| | Sbjct: 882 atccaagaaatatcaatggtggaccagcaatgccatttcaacttgaggttgtcgaagctg 941 Query: 248 cactgctttctagaatacaaaggctggaacaaagattaatgcatgtcgaacctcgtgtgg 307 | ||||||||||||||||||||| |||| | ||| |||||| | |||| |||||||||| Sbjct: 942 ccctgctttctagaatacaaaggttggagcgaaggctaatgcgtatcgagcctcgtgtgg 1001 Query: 308 ctgcattgcttgaagttctaccaaatcggctgacag 343 ||| |||||||||||||||||||||||| |||||| Sbjct: 1002 gtgctttgcttgaagttctaccaaatcggttgacag 1037
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 93.7 bits (47), Expect = 4e-16 Identities = 74/83 (89%) Strand = Plus / Plus Query: 61 cgtgagcaggccatattactcaaccttggttccttgcgagcaattgctatgcatgagcgt 120 ||||| || ||||||||| | || |||||||||||||||||||||||||||||||| || Sbjct: 26998728 cgtgaacaagccatattagtaaatcttggttccttgcgagcaattgctatgcatgaacgc 26998787 Query: 121 gtccttatattcaattataacag 143 || |||||||||||||| ||||| Sbjct: 26998788 gttcttatattcaattacaacag 26998810 Score = 77.8 bits (39), Expect = 2e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 142 agcccaggaggaaaggcctttttagagctattacgaccccggttaaatccaaggaacatc 201 |||||||||||||||||||| ||||| ||||| || |||||||||||||| || ||| Sbjct: 26998909 agcccaggaggaaaggccttcttagattcattactgccacggttaaatccaagaaatatc 26998968 Query: 202 aatggtgggcctgcgatgccttttcaactcgaggt 236 |||||||| || || ||||| |||||||| ||||| Sbjct: 26998969 aatggtggaccagcaatgccatttcaacttgaggt 26999003 Score = 65.9 bits (33), Expect = 8e-08 Identities = 48/53 (90%) Strand = Plus / Plus Query: 8 gaagcgtcgacccatcactatggctaatgaactcaatgccttccctgctggta 60 ||||||| |||||||| |||||||||||||| |||||||| ||| |||||||| Sbjct: 26998140 gaagcgttgacccatcgctatggctaatgaattcaatgccatccttgctggta 26998192 Score = 60.0 bits (30), Expect = 5e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 233 aggttgttgaagcagcactgctttctagaatacaaaggctggaacaaagattaatgcatg 292 ||||||| ||||| || ||||||||||||||||||||| |||| | ||| |||||| | Sbjct: 26999448 aggttgtcgaagctgccctgctttctagaatacaaaggttggagcgaaggctaatgcgta 26999507 Query: 293 tcgaacctcgtgtg 306 |||| ||||||||| Sbjct: 26999508 tcgagcctcgtgtg 26999521 Score = 56.0 bits (28), Expect = 8e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 304 gtggctgcattgcttgaagttctaccaaatcggctgacag 343 |||| ||| |||||||||||||||||||||||| |||||| Sbjct: 27000250 gtgggtgctttgcttgaagttctaccaaatcggttgacag 27000289
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 93.7 bits (47), Expect = 4e-16 Identities = 74/83 (89%) Strand = Plus / Plus Query: 61 cgtgagcaggccatattactcaaccttggttccttgcgagcaattgctatgcatgagcgt 120 ||||| || ||||||||| | || |||||||||||||||||||||||||||||||| || Sbjct: 27090051 cgtgaacaagccatattagtaaatcttggttccttgcgagcaattgctatgcatgaacgc 27090110 Query: 121 gtccttatattcaattataacag 143 || |||||||||||||| ||||| Sbjct: 27090111 gttcttatattcaattacaacag 27090133 Score = 77.8 bits (39), Expect = 2e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 142 agcccaggaggaaaggcctttttagagctattacgaccccggttaaatccaaggaacatc 201 |||||||||||||||||||| ||||| ||||| || |||||||||||||| || ||| Sbjct: 27090232 agcccaggaggaaaggccttcttagattcattactgccacggttaaatccaagaaatatc 27090291 Query: 202 aatggtgggcctgcgatgccttttcaactcgaggt 236 |||||||| || || ||||| |||||||| ||||| Sbjct: 27090292 aatggtggaccagcaatgccatttcaacttgaggt 27090326 Score = 65.9 bits (33), Expect = 8e-08 Identities = 48/53 (90%) Strand = Plus / Plus Query: 8 gaagcgtcgacccatcactatggctaatgaactcaatgccttccctgctggta 60 ||||||| |||||||| |||||||||||||| |||||||| ||| |||||||| Sbjct: 27089463 gaagcgttgacccatcgctatggctaatgaattcaatgccatccttgctggta 27089515 Score = 60.0 bits (30), Expect = 5e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 233 aggttgttgaagcagcactgctttctagaatacaaaggctggaacaaagattaatgcatg 292 ||||||| ||||| || ||||||||||||||||||||| |||| | ||| |||||| | Sbjct: 27090771 aggttgtcgaagctgccctgctttctagaatacaaaggttggagcgaaggctaatgcgta 27090830 Query: 293 tcgaacctcgtgtg 306 |||| ||||||||| Sbjct: 27090831 tcgagcctcgtgtg 27090844 Score = 56.0 bits (28), Expect = 8e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 304 gtggctgcattgcttgaagttctaccaaatcggctgacag 343 |||| ||| |||||||||||||||||||||||| |||||| Sbjct: 27091573 gtgggtgctttgcttgaagttctaccaaatcggttgacag 27091612
>gb|AC087851.4|AC087851 Oryza sativa chromosome 3 BAC OSJNBb0072E24 genomic sequence, complete sequence Length = 111882 Score = 93.7 bits (47), Expect = 4e-16 Identities = 74/83 (89%) Strand = Plus / Minus Query: 61 cgtgagcaggccatattactcaaccttggttccttgcgagcaattgctatgcatgagcgt 120 ||||| || ||||||||| | || |||||||||||||||||||||||||||||||| || Sbjct: 60671 cgtgaacaagccatattagtaaatcttggttccttgcgagcaattgctatgcatgaacgc 60612 Query: 121 gtccttatattcaattataacag 143 || |||||||||||||| ||||| Sbjct: 60611 gttcttatattcaattacaacag 60589 Score = 77.8 bits (39), Expect = 2e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 142 agcccaggaggaaaggcctttttagagctattacgaccccggttaaatccaaggaacatc 201 |||||||||||||||||||| ||||| ||||| || |||||||||||||| || ||| Sbjct: 60490 agcccaggaggaaaggccttcttagattcattactgccacggttaaatccaagaaatatc 60431 Query: 202 aatggtgggcctgcgatgccttttcaactcgaggt 236 |||||||| || || ||||| |||||||| ||||| Sbjct: 60430 aatggtggaccagcaatgccatttcaacttgaggt 60396 Score = 65.9 bits (33), Expect = 8e-08 Identities = 48/53 (90%) Strand = Plus / Minus Query: 8 gaagcgtcgacccatcactatggctaatgaactcaatgccttccctgctggta 60 ||||||| |||||||| |||||||||||||| |||||||| ||| |||||||| Sbjct: 61259 gaagcgttgacccatcgctatggctaatgaattcaatgccatccttgctggta 61207 Score = 60.0 bits (30), Expect = 5e-06 Identities = 63/74 (85%) Strand = Plus / Minus Query: 233 aggttgttgaagcagcactgctttctagaatacaaaggctggaacaaagattaatgcatg 292 ||||||| ||||| || ||||||||||||||||||||| |||| | ||| |||||| | Sbjct: 59951 aggttgtcgaagctgccctgctttctagaatacaaaggttggagcgaaggctaatgcgta 59892 Query: 293 tcgaacctcgtgtg 306 |||| ||||||||| Sbjct: 59891 tcgagcctcgtgtg 59878 Score = 56.0 bits (28), Expect = 8e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 304 gtggctgcattgcttgaagttctaccaaatcggctgacag 343 |||| ||| |||||||||||||||||||||||| |||||| Sbjct: 59149 gtgggtgctttgcttgaagttctaccaaatcggttgacag 59110
>emb|AL353736.11| Human DNA sequence from clone RP11-412P1 on chromosome 9 Contains the 3' end of the CDK5RAP2 gene for CDK5 regulatory subunit associated protein 2 (C48), complete sequence Length = 148875 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 264 acaaaggctggaacaaagatt 284 ||||||||||||||||||||| Sbjct: 130581 acaaaggctggaacaaagatt 130601
>gb|AE013116.1| Thermoanaerobacter tengcongensis MB4, section 143 of 244 of the complete genome Length = 6429 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 aaggctggaacaaagattaa 286 |||||||||||||||||||| Sbjct: 1483 aaggctggaacaaagattaa 1464
>gb|AC122245.5| Mus musculus BAC clone RP23-151P21 from 18, complete sequence Length = 191988 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 gttaaatccaaggaacatca 202 |||||||||||||||||||| Sbjct: 99657 gttaaatccaaggaacatca 99676
>gb|AC103758.14| Homo sapiens chromosome 8, clone CTD-3135A9, complete sequence Length = 235357 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 gctatgcatgagcgtgtcct 125 |||||||||||||||||||| Sbjct: 42165 gctatgcatgagcgtgtcct 42146
>emb|AJ621740.1| Gallus gallus GMCSF gene for granulocyte-macrophage colony-stimulating factor and IL3 gene for interleukin-3, BAC bCHORI92M14 clone, contig 1 Length = 54760 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 aggaggaaaggcctttttag 166 |||||||||||||||||||| Sbjct: 26939 aggaggaaaggcctttttag 26920
>emb|BX682229.4| Mouse DNA sequence from clone RP24-531M17 on chromosome 2, complete sequence Length = 57881 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gtgtggctgcattgcttgaa 321 |||||||||||||||||||| Sbjct: 45917 gtgtggctgcattgcttgaa 45936
>emb|AL772306.10| Mouse DNA sequence from clone RP23-89L15 on chromosome 4, complete sequence Length = 210648 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 gagcaattgctatgcatgag 117 |||||||||||||||||||| Sbjct: 144419 gagcaattgctatgcatgag 144438
>gb|AC154673.2| Mus musculus BAC clone RP24-298M20 from chromosome 17, complete sequence Length = 157621 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 238 gttgaagcagcactgctttctaga 261 |||||| ||||||||||||||||| Sbjct: 48553 gttgaaccagcactgctttctaga 48576 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,679,759 Number of Sequences: 3902068 Number of extensions: 2679759 Number of successful extensions: 44266 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44219 Number of HSP's gapped (non-prelim): 47 length of query: 346 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 324 effective length of database: 17,147,199,772 effective search space: 5555692726128 effective search space used: 5555692726128 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
