ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal24n21 |
|---|---|
| Clone Library Name | barley_pub |
>PAO_ARATH (Q9FYC2) Pheophorbide a oxygenase, chloroplast precursor (EC| 1.-.-.-) (Pheide a oxygenase) (AtPaO) (Accelerated cell death 1) (Lethal leaf-spot 1 homolog) (Lls1) Length = 537 Score = 259 bits (661), Expect = 3e-69 Identities = 117/143 (81%), Positives = 129/143 (90%) Frame = +3 Query: 36 LLFVWPDENGWDKAKATKPPMLPKEFDDPAFSTVTIQRDLFYGYDTLMENVSDPSHIEFA 215 LLFVWPDENGWD+A + +PP LP +FD P FSTVTIQRDLFYGYDTLMENVSDPSHI+FA Sbjct: 197 LLFVWPDENGWDRANSIEPPRLPDDFDKPEFSTVTIQRDLFYGYDTLMENVSDPSHIDFA 256 Query: 216 XHKVTGRRDRAKPLPFKMESSGAWGYSGANTGNPRITATFEAPCYALNKIEIDTKLPIVG 395 HKVTGRRDRAKPLPFK+ESSG WG+ GAN +PRITA F APCY++NKIE+D KLPIVG Sbjct: 257 HHKVTGRRDRAKPLPFKVESSGPWGFQGANDDSPRITAKFVAPCYSMNKIELDAKLPIVG 316 Query: 396 DQKWVIWICSFNIPMAPGKTRSI 464 +QKWVIWICSFNIPMAPGKTRSI Sbjct: 317 NQKWVIWICSFNIPMAPGKTRSI 339
>CHER2_PSEAE (Q9I6V7) Chemotaxis protein methyltransferase 2 (EC 2.1.1.80)| Length = 280 Score = 30.8 bits (68), Expect = 1.8 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 14/79 (17%) Frame = -1 Query: 257 QRLGSISSPSDLVVSKFYVRGIRDVLHQGVIPIEEV-----PLDR---------HRGEGR 120 + LGS P +V S G+ D QGV P+E + PL + + G+ R Sbjct: 135 EALGSFDPPVKIVASDIDT-GVLDCARQGVYPLERLEQMPAPLKKRFFLRGTGPNAGKAR 193 Query: 119 VIELFRQHWRFGRLGLVPA 63 V+E RQ F ++ L+ A Sbjct: 194 VVEELRQLVEFRQINLLEA 212
>CH602_VIBPA (Q87JG6) 60 kDa chaperonin 2 (Protein Cpn60 2) (groEL protein 2)| Length = 532 Score = 29.6 bits (65), Expect = 4.0 Identities = 18/66 (27%), Positives = 32/66 (48%) Frame = -1 Query: 350 IARGLESCSDARVTGICP*ISPCAA*FHFERQRLGSISSPSDLVVSKFYVRGIRDVLHQG 171 + RG++ ++A V + PC+ ++GSIS+ SD + + + V G Sbjct: 116 LKRGIDKATEAAVEKLREMSKPCSD--KESITQVGSISANSDRAIGEIIAEAMEKVGRNG 173 Query: 170 VIPIEE 153 VI +EE Sbjct: 174 VITVEE 179
>CH60_ACIAD (Q6F8P6) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 544 Score = 29.3 bits (64), Expect = 5.2 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = -1 Query: 257 QRLGSISSPSDLVVSKFYVRGIRDVLHQGVIPIEE 153 +++GSIS+ SD V K + + V +GVI +EE Sbjct: 145 EQVGSISANSDETVGKLIAQAMEKVGKEGVITVEE 179
>CH601_RHOPA (P60364) 60 kDa chaperonin 1 (Protein Cpn60 1) (groEL protein 1)| Length = 547 Score = 29.3 bits (64), Expect = 5.2 Identities = 20/66 (30%), Positives = 34/66 (51%) Frame = -1 Query: 350 IARGLESCSDARVTGICP*ISPCAA*FHFERQRLGSISSPSDLVVSKFYVRGIRDVLHQG 171 + RG+E A V I P A+ E ++G+IS+ D + K + ++ V ++G Sbjct: 116 LKRGIEIAVAAVVKDIQKRAKPVAS--SAEIAQVGTISANGDAPIGKMIAQAMQKVGNEG 173 Query: 170 VIPIEE 153 VI +EE Sbjct: 174 VITVEE 179
>CH60_BUCTT (Q8KIX1) 60 kDa chaperonin (Protein Cpn60) (groEL protein)| Length = 553 Score = 28.9 bits (63), Expect = 6.8 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = -1 Query: 254 RLGSISSPSDLVVSKFYVRGIRDVLHQGVIPIEE 153 ++G+IS+ SDL V K + V +GVI +EE Sbjct: 146 QVGTISANSDLTVGKLIAEAMGKVGKEGVITVEE 179
>ANR13_HUMAN (Q8IZ07) Ankyrin repeat domain-containing protein 13 (Protein KE03)| Length = 590 Score = 28.9 bits (63), Expect = 6.8 Identities = 13/45 (28%), Positives = 22/45 (48%) Frame = +3 Query: 249 KPLPFKMESSGAWGYSGANTGNPRITATFEAPCYALNKIEIDTKL 383 K + F+ SG WG+ T + +EA Y +N + + TK+ Sbjct: 239 KNIAFERTKSGFWGW---RTDKAEVVNGYEAKVYTVNNVNVITKI 280
>CH603_BRAJA (P35862) 60 kDa chaperonin 3 (Protein Cpn60 3) (groEL protein 3)| Length = 545 Score = 28.9 bits (63), Expect = 6.8 Identities = 13/37 (35%), Positives = 23/37 (62%) Frame = -1 Query: 263 ERQRLGSISSPSDLVVSKFYVRGIRDVLHQGVIPIEE 153 E ++G+IS+ D + KF ++ V ++GVI +EE Sbjct: 142 EIAQVGAISANGDQEIGKFLADAVKKVGNEGVITVEE 178
>CH602_CHRVO (Q7NQX1) 60 kDa chaperonin 2 (Protein Cpn60 2) (groEL protein 2)| Length = 546 Score = 28.9 bits (63), Expect = 6.8 Identities = 19/66 (28%), Positives = 32/66 (48%) Frame = -1 Query: 350 IARGLESCSDARVTGICP*ISPCAA*FHFERQRLGSISSPSDLVVSKFYVRGIRDVLHQG 171 + RG++ + V I PCA E ++GSIS+ SD + + + V +G Sbjct: 116 LKRGIDKAVVSLVGEIAKIAKPCAT--SKEIAQVGSISANSDSDIGEIIANAMEKVGKEG 173 Query: 170 VIPIEE 153 VI +E+ Sbjct: 174 VITVED 179
>YFAS_ECO57 (Q8XE35) Hypothetical UPF0192 protein yfaS precursor| Length = 1534 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = +1 Query: 226 SLGEEIEPSLCRSKWNQAAHGDIQGQIPVTL 318 S G+E+ P + +W +AA Q IPVT+ Sbjct: 1354 SFGDELSPQNVQVRWREAAKTAQQSNIPVTV 1384
>CH602_VIBVY (Q7M7I2) 60 kDa chaperonin 2 (Protein Cpn60 2) (groEL protein 2)| Length = 532 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/66 (27%), Positives = 30/66 (45%) Frame = -1 Query: 350 IARGLESCSDARVTGICP*ISPCAA*FHFERQRLGSISSPSDLVVSKFYVRGIRDVLHQG 171 + RG++ D+ V + PC+ ++GSIS+ SD + + V G Sbjct: 116 LKRGIDKAVDSAVEKLRAMAQPCSD--KESITQVGSISANSDRAIGDIIAEAMEKVGRNG 173 Query: 170 VIPIEE 153 VI +EE Sbjct: 174 VITVEE 179
>CH602_VIBVU (Q8CWJ0) 60 kDa chaperonin 2 (Protein Cpn60 2) (groEL protein 2)| Length = 532 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/66 (27%), Positives = 30/66 (45%) Frame = -1 Query: 350 IARGLESCSDARVTGICP*ISPCAA*FHFERQRLGSISSPSDLVVSKFYVRGIRDVLHQG 171 + RG++ D+ V + PC+ ++GSIS+ SD + + V G Sbjct: 116 LKRGIDKAVDSAVEKLRAMAQPCSD--KESITQVGSISANSDRAIGDIIAEAMEKVGRNG 173 Query: 170 VIPIEE 153 VI +EE Sbjct: 174 VITVEE 179
>SYM_BACTN (Q8A3M1) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 679 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/66 (28%), Positives = 34/66 (51%) Frame = -1 Query: 326 SDARVTGICP*ISPCAA*FHFERQRLGSISSPSDLVVSKFYVRGIRDVLHQGVIPIEEVP 147 +D +TG CP A + + ++ G+ SP+DL+ K + G + V+ + +P Sbjct: 139 ADRYITGECPHCHSEGA-YGDQCEKCGTSLSPTDLINPKSAISGSKPVMKE--TKHWYLP 195 Query: 146 LDRHRG 129 LD+H G Sbjct: 196 LDKHEG 201
>CH606_BRAJA (Q89IK8) 60 kDa chaperonin 6 (Protein Cpn60 6) (groEL protein 6)| Length = 546 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/37 (35%), Positives = 23/37 (62%) Frame = -1 Query: 263 ERQRLGSISSPSDLVVSKFYVRGIRDVLHQGVIPIEE 153 E ++G+IS+ D + KF ++ V ++GVI +EE Sbjct: 143 EIAQVGTISANGDAEIGKFLADAMKKVGNEGVITVEE 179
>CH602_RHOPA (P60365) 60 kDa chaperonin 2 (Protein Cpn60 2) (groEL protein 2)| Length = 547 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/37 (35%), Positives = 23/37 (62%) Frame = -1 Query: 263 ERQRLGSISSPSDLVVSKFYVRGIRDVLHQGVIPIEE 153 E ++G+IS+ D + KF ++ V ++GVI +EE Sbjct: 143 EIAQVGTISANGDAEIGKFLADAMKKVGNEGVITVEE 179 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,937,990 Number of Sequences: 219361 Number of extensions: 1525718 Number of successful extensions: 4208 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4128 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4207 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
