ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal25b18 |
|---|---|
| Clone Library Name | barley_pub |
>RS15A_SCHPO (O94715) 40S ribosomal protein S15-A| Length = 153 Score = 34.7 bits (78), Expect = 0.055 Identities = 18/46 (39%), Positives = 25/46 (54%) Frame = -2 Query: 318 HSRFRRRIFKGATTGISRF*RTPKKGLVMAELSSAPATFRTALSTL 181 H+R RRR+ +G SRF R +K A L+ PAT +T L + Sbjct: 46 HARARRRMLRGLGPNASRFIRKLRKAKTEAPLNEKPATVKTHLRNM 91
>RS15B_SCHPO (Q9UTQ6) 40S ribosomal protein S15-B| Length = 154 Score = 33.9 bits (76), Expect = 0.094 Identities = 18/46 (39%), Positives = 25/46 (54%) Frame = -2 Query: 318 HSRFRRRIFKGATTGISRF*RTPKKGLVMAELSSAPATFRTALSTL 181 H+R RRR+ +G SRF R +K A L+ PAT +T L + Sbjct: 47 HARARRRMLRGLGPNASRFIRKLRKAKSEAPLNEKPATVKTHLRNM 92
>Y1460_ARCFU (O28812) Hypothetical protein AF1460| Length = 227 Score = 32.0 bits (71), Expect = 0.36 Identities = 14/26 (53%), Positives = 20/26 (76%) Frame = -2 Query: 381 LVFLISKIALFYSLIRQLFVTHSRFR 304 LVFLIS++AL + L+ +FV +S FR Sbjct: 145 LVFLISQLALVFLLVAAIFVNYSHFR 170
>RNY1_DEBHA (Q6BHB1) Ribonuclease T2-like precursor (EC 3.1.27.1) (RNase| T2-like) Length = 403 Score = 30.4 bits (67), Expect = 1.0 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = -1 Query: 286 GYNGNFSVLEDSEERIGDGRVELGSSYIQDGFVNLVPCQ 170 GY GNF+ D+E + GDG+ I DG + P Q Sbjct: 361 GYGGNFAWCLDTEHKHGDGKTAQTPIKISDGQCDSFPVQ 399
>XPP2_HUMAN (O43895) Xaa-Pro aminopeptidase 2 precursor (EC 3.4.11.9) (X-Pro| aminopeptidase 2) (Membrane-bound aminopeptidase P) (Membrane-bound APP) (Membrane-bound AmP) (mAmP) (Aminoacylproline aminopeptidase) Length = 674 Score = 29.3 bits (64), Expect = 2.3 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Frame = -1 Query: 274 NFSVLEDSEER--IGDGRVELGSSYIQDGFVNLVPCQKQDLFTFRFLEPAQLKKLYASKA 101 ++S + DS + +GD R+ +G+SY G ++P +K T+ P + K + Sbjct: 304 DYSQVRDSIQAYSLGDVRIWIGTSYTMYGIYEMIPKEKLVTDTY---SPVMMTKAVKNSK 360 Query: 100 RNSLLECS 77 +LL+ S Sbjct: 361 EQALLKAS 368
>NCAP_IBVBU (P69598) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 29.3 bits (64), Expect = 2.3 Identities = 23/78 (29%), Positives = 33/78 (42%) Frame = -1 Query: 289 RGYNGNFSVLEDSEERIGDGRVELGSSYIQDGFVNLVPCQKQDLFTFRFLEPAQLKKLYA 110 +G GNF + +EE I DGRV +NLVP LF R QL L+ Sbjct: 247 KGKEGNFGDDKMNEEGIKDGRV--------TAMLNLVPSSHACLFGSRVTPKLQLDGLHL 298 Query: 109 SKARNSLLECSIGKSDPF 56 +++ C + D + Sbjct: 299 RFEFTTVVPCDDPQFDNY 316
>NCAP_IBVBC (P69597) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 29.3 bits (64), Expect = 2.3 Identities = 23/78 (29%), Positives = 33/78 (42%) Frame = -1 Query: 289 RGYNGNFSVLEDSEERIGDGRVELGSSYIQDGFVNLVPCQKQDLFTFRFLEPAQLKKLYA 110 +G GNF + +EE I DGRV +NLVP LF R QL L+ Sbjct: 247 KGKEGNFGDDKMNEEGIKDGRV--------TAMLNLVPSSHACLFGSRVTPKLQLDGLHL 298 Query: 109 SKARNSLLECSIGKSDPF 56 +++ C + D + Sbjct: 299 RFEFTTVVPCDDPQFDNY 316
>NCAP_IBVB (P69596) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 29.3 bits (64), Expect = 2.3 Identities = 23/78 (29%), Positives = 33/78 (42%) Frame = -1 Query: 289 RGYNGNFSVLEDSEERIGDGRVELGSSYIQDGFVNLVPCQKQDLFTFRFLEPAQLKKLYA 110 +G GNF + +EE I DGRV +NLVP LF R QL L+ Sbjct: 247 KGKEGNFGDDKMNEEGIKDGRV--------TAMLNLVPSSHACLFGSRVTPKLQLDGLHL 298 Query: 109 SKARNSLLECSIGKSDPF 56 +++ C + D + Sbjct: 299 RFEFTTVVPCDDPQFDNY 316
>ARL11_HUMAN (Q969Q4) ADP-ribosylation factor-like protein 11 (ADP-ribosylation| factor-like tumor suppressor protein 1) Length = 196 Score = 28.5 bits (62), Expect = 4.0 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 8/70 (11%) Frame = +2 Query: 149 EGEEILFLARDKVDKAVLNVAGAELNSAITN------PFFGVL*NREIPVVAP-LKIR-R 304 EG +IL D D+A L + AEL + + PF + +E P P LKIR R Sbjct: 79 EGTDILVYVLDSTDEARLPESAAELTEVLNDPNMAGVPFLVLANKQEAPDALPLLKIRNR 138 Query: 305 LNRECVTNSC 334 L+ E + C Sbjct: 139 LSLERFQDHC 148
>RNC_SPICI (Q53844) Ribonuclease III (EC 3.1.26.3) (RNase III)| Length = 248 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +2 Query: 95 VASLGGIEFLELCGFEKPEGEEILFLARDKVDK 193 VA +GGI + E CG+ E E++ ARD + K Sbjct: 207 VAEIGGIRYGEGCGYTHKEAEQL--AARDALQK 237
>LYPA3_MOUSE (Q8VEB4) 1-O-acylceramide synthase precursor (EC 2.3.1.-) (ACS)| (Lysosomal phospholipase A2) (Lysophospholipase 3) (LCAT-like lysophospholipase) (LLPL) Length = 412 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +2 Query: 263 NREIPVVAPLKIRRLNRECVTNS 331 N IPV+ PLKIR R V+ S Sbjct: 245 NNRIPVIGPLKIREQQRSAVSTS 267
>LYPA3_HUMAN (Q8NCC3) 1-O-acylceramide synthase precursor (EC 2.3.1.-) (ACS)| (Lysosomal phospholipase A2) (Lysophospholipase 3) (LPLA2) (LCAT-like lysophospholipase) (LLPL) Length = 412 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +2 Query: 263 NREIPVVAPLKIRRLNRECVTNS 331 N IPV+ PLKIR R V+ S Sbjct: 245 NNRIPVIGPLKIREQQRSAVSTS 267
>NUDEL_DROME (P98159) Serine protease nudel precursor (EC 3.4.21.-)| Length = 2616 Score = 28.1 bits (61), Expect = 5.2 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 10/69 (14%) Frame = -1 Query: 382 SGVSHKQDCTILQFNSTTVRHTFPIQTTDFQRGYNGNFSVLE----------DSEERIGD 233 +GV Q C + + V H ++ Q G S+LE DS+E +GD Sbjct: 1083 AGVHFAQACHGRNSHDSLVDHVAYVKCPPMQCGLPSKSSMLEHSKRVRRAVSDSKEIVGD 1142 Query: 232 GRVELGSSY 206 GR+ +G SY Sbjct: 1143 GRI-VGGSY 1150
>FMO2_MOUSE (Q8K2I3) Dimethylaniline monooxygenase [N-oxide-forming] 2 (EC| 1.14.13.8) (Pulmonary flavin-containing monooxygenase 2) (FMO 2) (Dimethylaniline oxidase 2) Length = 534 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/46 (39%), Positives = 22/46 (47%) Frame = -1 Query: 355 TILQFNSTTVRHTFPIQTTDFQRGYNGNFSVLEDSEERIGDGRVEL 218 T + F TV I F GY +FS LEDS ++ D RV L Sbjct: 308 TAVVFEDGTVEEDVDIIV--FATGYTFSFSFLEDSLVKVEDNRVSL 351
>P210L_HUMAN (Q5VU65) Nuclear pore membrane glycoprotein 210-like precursor| (Nucleoporin 210 kDa-like) Length = 1888 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -3 Query: 188 QPCPLPETRSLHLPVSRTR 132 QPCPLP+ +PVSR R Sbjct: 776 QPCPLPQHNKWLIPVSRLR 794
>CLCKA_RAT (Q06393) Chloride channel protein ClC-Ka (Chloride channel Ka)| (ClC-K1) Length = 687 Score = 27.3 bits (59), Expect = 8.8 Identities = 22/97 (22%), Positives = 38/97 (39%) Frame = -2 Query: 396 FFLCSLVFLISKIALFYSLIRQLFVTHSRFRRRIFKGATTGISRF*RTPKKGLVMAELSS 217 FF +L F+ ++ Y ++ F+ + R + T + LV+A ++ Sbjct: 283 FFFVALGFICGVLSCAYLFCQRTFLRFIKTNRYTSRLLATSKPSY--AALVALVLASITY 340 Query: 216 APATFRTALSTLSLARNKIXXXXXXXXXXXSRNSMPP 106 P R S LS+A + +RNS PP Sbjct: 341 PPGVGRFMASRLSMAEHLHSLFDNNSWALMTRNSSPP 377 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,554,557 Number of Sequences: 219361 Number of extensions: 1111288 Number of successful extensions: 3179 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3117 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3179 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
