ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal25b18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_465873.1| Oryza sativa (japonica cultivar-group), mRNA 113 5e-22
2dbj|AK102956.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 5e-22
3dbj|AK062243.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 5e-22
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
5dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
6gb|AY107699.1| Zea mays PCO077134 mRNA sequence 82 2e-12
7gb|AY110441.1| Zea mays CL14665_2 mRNA sequence 78 3e-11
8gb|AC182658.2| Populus trichocarpa clone Pop1-124E10, complete s... 44 0.35
9gb|AY628385.1| Mangifera indica clone LMMA13 microsatellite sequ... 44 0.35
10emb|AL049690.20|HSJ1060K6 Human DNA sequence from clone RP5-1060... 42 1.4
11gb|AC091610.3| Homo sapiens chromosome 1 clone RP11-220M1, compl... 42 1.4
12ref|XM_508892.1| PREDICTED: Pan troglodytes similar to formin bi... 40 5.5
13ref|NM_015308.1| Homo sapiens formin binding protein 4 (FNBP4), ... 40 5.5
14gb|BC006557.2| Homo sapiens formin binding protein 4, mRNA (cDNA... 40 5.5
15emb|AL137480.1|HSM802205 Homo sapiens mRNA; cDNA DKFZp434M2023 (... 40 5.5
16gb|BC037404.1| Homo sapiens formin binding protein 4, mRNA (cDNA... 40 5.5
17dbj|AK123898.1| Homo sapiens cDNA FLJ41904 fis, clone PEBLM20056... 40 5.5
18dbj|AK054636.1| Homo sapiens cDNA FLJ30074 fis, clone BGGI110001... 40 5.5
19dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012 40 5.5
20gb|AC021443.27| Homo sapiens chromosome 11, clone RP11-692M12, c... 40 5.5
21emb|AL359680.4|CNS05TEY Human chromosome 14 DNA sequence BAC R-7... 40 5.5
22emb|AL672284.15| Mouse DNA sequence from clone RP23-39I7 on chro... 40 5.5
23dbj|AB023231.2| Homo sapiens mRNA for KIAA1014 protein, partial cds 40 5.5 
>ref|XM_465873.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1580

 Score =  113 bits (57), Expect = 5e-22
 Identities = 180/219 (82%), Gaps = 4/219 (1%)
 Strand = Plus / Plus

                                                                        
Query: 48   gaaattcagaaaggatcagacttaccaatgctacattccaggagagagttgcgagcct-- 105
            ||||||||| ||| |||||||| ||||| |||||||| |||||||| ||||  |  ||  
Sbjct: 1146 gaaattcaggaag-atcagactgaccaacgctacatttcaggagagggttggcaatctgc 1204

                                                                        
Query: 106  -tggaggcatagagtttcttgagctgtgcgggttcgagaaaccggaaggtgaagagatct 164
             ||||||||||||||||||  |||| || || || |||||||  |||||  | ||| |||
Sbjct: 1205 atggaggcatagagtttctccagctctgtggatttgagaaacttgaaggcaacgagttct 1264

                                                                        
Query: 165  tgtttctggcaagggacaaggttgacaaagccgtcctgaatgtagctggagccgagctca 224
            ||||  |||||||||||||||||||||| |||||||||||    |||||||||||||| |
Sbjct: 1265 tgttcttggcaagggacaaggttgacaaggccgtcctgaacactgctggagccgagctga 1324

                                                   
Query: 225  actcggccatcaccaatcctttcttcggagtcctctaaa 263
            | || || ||||| ||||||||||| |||||||| ||||
Sbjct: 1325 attctgctatcactaatcctttctttggagtcctttaaa 1363
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>dbj|AK102956.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115G09, full
            insert sequence
          Length = 1580

 Score =  113 bits (57), Expect = 5e-22
 Identities = 180/219 (82%), Gaps = 4/219 (1%)
 Strand = Plus / Plus

                                                                        
Query: 48   gaaattcagaaaggatcagacttaccaatgctacattccaggagagagttgcgagcct-- 105
            ||||||||| ||| |||||||| ||||| |||||||| |||||||| ||||  |  ||  
Sbjct: 1146 gaaattcaggaag-atcagactgaccaacgctacatttcaggagagggttggcaatctgc 1204

                                                                        
Query: 106  -tggaggcatagagtttcttgagctgtgcgggttcgagaaaccggaaggtgaagagatct 164
             ||||||||||||||||||  |||| || || || |||||||  |||||  | ||| |||
Sbjct: 1205 atggaggcatagagtttctccagctctgtggatttgagaaacttgaaggcaacgagttct 1264

                                                                        
Query: 165  tgtttctggcaagggacaaggttgacaaagccgtcctgaatgtagctggagccgagctca 224
            ||||  |||||||||||||||||||||| |||||||||||    |||||||||||||| |
Sbjct: 1265 tgttcttggcaagggacaaggttgacaaggccgtcctgaacactgctggagccgagctga 1324

                                                   
Query: 225  actcggccatcaccaatcctttcttcggagtcctctaaa 263
            | || || ||||| ||||||||||| |||||||| ||||
Sbjct: 1325 attctgctatcactaatcctttctttggagtcctttaaa 1363
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>dbj|AK062243.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E12, full
           insert sequence
          Length = 940

 Score =  113 bits (57), Expect = 5e-22
 Identities = 180/219 (82%), Gaps = 4/219 (1%)
 Strand = Plus / Plus

                                                                       
Query: 48  gaaattcagaaaggatcagacttaccaatgctacattccaggagagagttgcgagcct-- 105
           ||||||||| ||| |||||||| ||||| |||||||| |||||||| ||||  |  ||  
Sbjct: 520 gaaattcaggaag-atcagactgaccaacgctacatttcaggagagggttggcaatctgc 578

                                                                       
Query: 106 -tggaggcatagagtttcttgagctgtgcgggttcgagaaaccggaaggtgaagagatct 164
            ||||||||||||||||||  |||| || || || |||||||  |||||  | ||| |||
Sbjct: 579 atggaggcatagagtttctccagctctgtggatttgagaaacttgaaggcaacgagttct 638

                                                                       
Query: 165 tgtttctggcaagggacaaggttgacaaagccgtcctgaatgtagctggagccgagctca 224
           ||||  |||||||||||||||||||||| |||||||||||    |||||||||||||| |
Sbjct: 639 tgttcttggcaagggacaaggttgacaaggccgtcctgaacactgctggagccgagctga 698

                                                  
Query: 225 actcggccatcaccaatcctttcttcggagtcctctaaa 263
           | || || ||||| ||||||||||| |||||||| ||||
Sbjct: 699 attctgctatcactaatcctttctttggagtcctttaaa 737
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  107 bits (54), Expect = 3e-20
 Identities = 132/158 (83%)
 Strand = Plus / Plus

                                                                            
Query: 106      tggaggcatagagtttcttgagctgtgcgggttcgagaaaccggaaggtgaagagatctt 165
                ||||||||||||||||||  |||| || || || |||||||  |||||  | ||| ||||
Sbjct: 18035574 tggaggcatagagtttctccagctctgtggatttgagaaacttgaaggcaacgagttctt 18035633

                                                                            
Query: 166      gtttctggcaagggacaaggttgacaaagccgtcctgaatgtagctggagccgagctcaa 225
                |||  |||||||||||||||||||||| |||||||||||    |||||||||||||| ||
Sbjct: 18035634 gttcttggcaagggacaaggttgacaaggccgtcctgaacactgctggagccgagctgaa 18035693

                                                      
Query: 226      ctcggccatcaccaatcctttcttcggagtcctctaaa 263
                 || || ||||| ||||||||||| |||||||| ||||
Sbjct: 18035694 ttctgctatcactaatcctttctttggagtcctttaaa 18035731
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>dbj|AP005285.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1003_F04
          Length = 139563

 Score =  107 bits (54), Expect = 3e-20
 Identities = 132/158 (83%)
 Strand = Plus / Plus

                                                                         
Query: 106   tggaggcatagagtttcttgagctgtgcgggttcgagaaaccggaaggtgaagagatctt 165
             ||||||||||||||||||  |||| || || || |||||||  |||||  | ||| ||||
Sbjct: 97168 tggaggcatagagtttctccagctctgtggatttgagaaacttgaaggcaacgagttctt 97227

                                                                         
Query: 166   gtttctggcaagggacaaggttgacaaagccgtcctgaatgtagctggagccgagctcaa 225
             |||  |||||||||||||||||||||| |||||||||||    |||||||||||||| ||
Sbjct: 97228 gttcttggcaagggacaaggttgacaaggccgtcctgaacactgctggagccgagctgaa 97287

                                                   
Query: 226   ctcggccatcaccaatcctttcttcggagtcctctaaa 263
              || || ||||| ||||||||||| |||||||| ||||
Sbjct: 97288 ttctgctatcactaatcctttctttggagtcctttaaa 97325
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>gb|AY107699.1| Zea mays PCO077134 mRNA sequence
          Length = 916

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 122/149 (81%)
 Strand = Plus / Plus

                                                                       
Query: 110 ggcatagagtttcttgagctgtgcgggttcgagaaaccggaaggtgaagagatcttgttt 169
           ||||||||||| || ||||| ||||| || |||||||  |||||  | |||  |||||||
Sbjct: 575 ggcatagagttcctggagctctgcggatttgagaaacttgaagggaacgagtacttgttt 634

                                                                       
Query: 170 ctggcaagggacaaggttgacaaagccgtcctgaatgtagctggagccgagctcaactcg 229
            |||||||||| || || ||||| ||  |||||||   ||||||||||||||| || || 
Sbjct: 635 ttggcaagggaaaaagtcgacaaggctatcctgaacacagctggagccgagctgaattct 694

                                        
Query: 230 gccatcaccaatcctttcttcggagtcct 258
           |||||||||||||||||||| || |||||
Sbjct: 695 gccatcaccaatcctttctttggggtcct 723



 Score = 46.1 bits (23), Expect = 0.089
 Identities = 45/51 (88%), Gaps = 1/51 (1%)
 Strand = Plus / Plus

                                                              
Query: 48  gaaattcagaaaggatcagacttaccaatgctacattccaggagagagttg 98
           |||||| |||||| ||||| || |||||||||||||| |||||||| ||||
Sbjct: 511 gaaatttagaaag-atcaggctaaccaatgctacatttcaggagagggttg 560
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>gb|AY110441.1| Zea mays CL14665_2 mRNA sequence
          Length = 676

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                              
Query: 208 agctggagccgagctcaactcggccatcaccaatcctttcttcggagtcct 258
           ||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct: 359 agctggagccgagctgaattctgccatcaccaatcctttcttcggagtcct 309
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>gb|AC182658.2| Populus trichocarpa clone Pop1-124E10, complete sequence
          Length = 99811

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 61/74 (82%)
 Strand = Plus / Plus

                                                                         
Query: 118   gtttcttgagctgtgcgggttcgagaaaccggaaggtgaagagatcttgtttctggcaag 177
             ||||||||||||||| ||||| ||||||   ||| | || ||| |||| ||||| || ||
Sbjct: 71047 gtttcttgagctgtgtgggtttgagaaaattgaaagcgacgagttcttttttcttgctag 71106

                           
Query: 178   ggacaaggttgaca 191
             ||||||||| ||||
Sbjct: 71107 ggacaaggtggaca 71120
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>gb|AY628385.1| Mangifera indica clone LMMA13 microsatellite sequence
          Length = 488

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 110 ggcatagagtttcttgagctgtgcgg 135
           |||||||||||| |||||||||||||
Sbjct: 298 ggcatagagtttattgagctgtgcgg 273
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>emb|AL049690.20|HSJ1060K6 Human DNA sequence from clone RP5-1060K6 on chromosome 20p12.1-13
            Contains the RPS11P1 gene for ribosomal protein S11
            pseudogene 1, complete sequence
          Length = 117349

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 78   ctacattccaggagagagttg 98
            |||||||||||||||||||||
Sbjct: 5460 ctacattccaggagagagttg 5480
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>gb|AC091610.3| Homo sapiens chromosome 1 clone RP11-220M1, complete sequence
          Length = 168506

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 46     aggaaattcagaaaggatcag 66
              |||||||||||||||||||||
Sbjct: 121330 aggaaattcagaaaggatcag 121310
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>ref|XM_508892.1| PREDICTED: Pan troglodytes similar to formin binding protein 4
           (LOC451706), mRNA
          Length = 477

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 92  agagttgcgagccttggagg 111
           ||||||||||||||||||||
Sbjct: 148 agagttgcgagccttggagg 167
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>ref|NM_015308.1| Homo sapiens formin binding protein 4 (FNBP4), mRNA
          Length = 3995

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 92   agagttgcgagccttggagg 111
            ||||||||||||||||||||
Sbjct: 1269 agagttgcgagccttggagg 1288
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>gb|BC006557.2| Homo sapiens formin binding protein 4, mRNA (cDNA clone
            IMAGE:2823964), partial cds
          Length = 4014

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 92   agagttgcgagccttggagg 111
            ||||||||||||||||||||
Sbjct: 1272 agagttgcgagccttggagg 1291
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>emb|AL137480.1|HSM802205 Homo sapiens mRNA; cDNA DKFZp434M2023 (from clone DKFZp434M2023)
          Length = 4018

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 92   agagttgcgagccttggagg 111
            ||||||||||||||||||||
Sbjct: 1237 agagttgcgagccttggagg 1256
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>gb|BC037404.1| Homo sapiens formin binding protein 4, mRNA (cDNA clone MGC:36749
            IMAGE:5140963), complete cds
          Length = 3995

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 92   agagttgcgagccttggagg 111
            ||||||||||||||||||||
Sbjct: 1269 agagttgcgagccttggagg 1288
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>dbj|AK123898.1| Homo sapiens cDNA FLJ41904 fis, clone PEBLM2005632, moderately
            similar to Mus musculus formin binding protein 4 (Fnbp4)
          Length = 2721

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 92   agagttgcgagccttggagg 111
            ||||||||||||||||||||
Sbjct: 1105 agagttgcgagccttggagg 1124
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>dbj|AK054636.1| Homo sapiens cDNA FLJ30074 fis, clone BGGI11000123, highly similar to
            Mus musculus formin binding protein 30 mRNA
          Length = 2796

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 92   agagttgcgagccttggagg 111
            ||||||||||||||||||||
Sbjct: 1261 agagttgcgagccttggagg 1280
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>dbj|AP007161.1| Aspergillus oryzae RIB40 genomic DNA, SC012
          Length = 2668010

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 258     tctaaaaccgagaaattccc 277
               ||||||||||||||||||||
Sbjct: 1721203 tctaaaaccgagaaattccc 1721222
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>gb|AC021443.27| Homo sapiens chromosome 11, clone RP11-692M12, complete sequence
          Length = 220283

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    agagttgcgagccttggagg 111
             ||||||||||||||||||||
Sbjct: 96648 agagttgcgagccttggagg 96629
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>emb|AL359680.4|CNS05TEY Human chromosome 14 DNA sequence BAC R-716B8 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 175009

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    gccatcaccaatcctttctt 249
              ||||||||||||||||||||
Sbjct: 139411 gccatcaccaatcctttctt 139392
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>emb|AL672284.15| Mouse DNA sequence from clone RP23-39I7 on chromosome X, complete
              sequence
          Length = 227918

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 354    gtgcaatcttgcttatgaga 373
              ||||||||||||||||||||
Sbjct: 118391 gtgcaatcttgcttatgaga 118410
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>dbj|AB023231.2| Homo sapiens mRNA for KIAA1014 protein, partial cds
          Length = 4145

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 92   agagttgcgagccttggagg 111
            ||||||||||||||||||||
Sbjct: 1437 agagttgcgagccttggagg 1456


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,142,797
Number of Sequences: 3902068
Number of extensions: 3142797
Number of successful extensions: 51932
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51867
Number of HSP's gapped (non-prelim): 58
length of query: 412
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 390
effective length of database: 17,147,199,772
effective search space: 6687407911080
effective search space used: 6687407911080
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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