| Clone Name | baal25b13 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK104144.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-A12, full insert sequence Length = 997 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 276 gatggattcttgagcccgcaggagacggcgactggaaacacatcggctaccgcgtcgccc 335 ||||| |||||||||| |||||||||||||| ||| || ||||| ||||||||||| | Sbjct: 380 gatgggttcttgagcctgcaggagacggcgattggcgtcatatcgggtaccgcgtcgcac 439 Query: 336 ggcccggcgccatcgagatcgcatccg 362 | ||||||| | || |||| ||||||| Sbjct: 440 gacccggcggcttccagatagcatccg 466
>dbj|AK060098.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-G12, full insert sequence Length = 1024 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 276 gatggattcttgagcccgcaggagacggcgactggaaacacatcggctaccgcgtcgccc 335 ||||| |||||||||| |||||||||||||| ||| || ||||| ||||||||||| | Sbjct: 338 gatgggttcttgagcctgcaggagacggcgattggcgtcatatcgggtaccgcgtcgcac 397 Query: 336 ggcccggcgccatcgagatcgcatccg 362 | ||||||| | || |||| ||||||| Sbjct: 398 gacccggcggcttccagatagcatccg 424
>dbj|AK059861.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-C05, full insert sequence Length = 937 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 276 gatggattcttgagcccgcaggagacggcgactggaaacacatcggctaccgcgtcgccc 335 ||||| |||||||||| |||||||||||||| ||| || ||||| ||||||||||| | Sbjct: 434 gatgggttcttgagcctgcaggagacggcgattggcgtcatatcgggtaccgcgtcgcac 493 Query: 336 ggcccggcgccatcgagatcgcatccg 362 | ||||||| | || |||| ||||||| Sbjct: 494 gacccggcggcttccagatagcatccg 520
>dbj|AK059747.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-A02, full insert sequence Length = 923 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 276 gatggattcttgagcccgcaggagacggcgactggaaacacatcggctaccgcgtcgccc 335 ||||| |||||||||| |||||||||||||| ||| || ||||| ||||||||||| | Sbjct: 279 gatgggttcttgagcctgcaggagacggcgattggcgtcatatcgggtaccgcgtcgcac 338 Query: 336 ggcccggcgccatcgagatcgcatccg 362 | ||||||| | || |||| ||||||| Sbjct: 339 gacccggcggcttccagatagcatccg 365
>dbj|AK059321.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-H08, full insert sequence Length = 974 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Plus Query: 276 gatggattcttgagcccgcaggagacggcgactggaaacacatcggctaccgcgtcgccc 335 ||||| |||||||||| |||||||||||||| ||| || ||||| ||||||||||| | Sbjct: 291 gatgggttcttgagcctgcaggagacggcgattggcgtcatatcgggtaccgcgtcgcgc 350 Query: 336 ggcccggcgccatcgagatcgcatccg 362 | ||||||| | || |||| ||||||| Sbjct: 351 gacccggcggcttccagatagcatccg 377
>dbj|AK104250.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-H05, full insert sequence Length = 979 Score = 54.0 bits (27), Expect = 5e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 276 gatggattcttgagcccgcaggagacggcgactggaaacacatcggctaccgcgtcgccc 335 ||||| |||| ||||| |||||||||||||| ||| || ||||| ||||||||||| | Sbjct: 306 gatgggttctcgagcctgcaggagacggcgattggcgtcatatcgggtaccgcgtcgcac 365 Query: 336 ggcccggcgccatcgagatcgcatccg 362 | ||||||| | || |||| ||||||| Sbjct: 366 gacccggcggcttccagatagcatccg 392
>dbj|AK104179.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-G06, full insert sequence Length = 974 Score = 54.0 bits (27), Expect = 5e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 276 gatggattcttgagcccgcaggagacggcgactggaaacacatcggctaccgcgtcgccc 335 ||||| |||| ||||| |||||||||||||| ||| || ||||| ||||||||||| | Sbjct: 357 gatgggttctcgagcctgcaggagacggcgattggcgtcatatcgggtaccgcgtcgcac 416 Query: 336 ggcccggcgccatcgagatcgcatccg 362 | ||||||| | || |||| ||||||| Sbjct: 417 gacccggcggcttccagatagcatccg 443
>dbj|AK104015.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-F09, full insert sequence Length = 969 Score = 54.0 bits (27), Expect = 5e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 276 gatggattcttgagcccgcaggagacggcgactggaaacacatcggctaccgcgtcgccc 335 ||||| |||| ||||| |||||||||||||| ||| || ||||| ||||||||||| | Sbjct: 306 gatgggttctcgagcctgcaggagacggcgattggcgtcatatcgggtaccgcgtcgcac 365 Query: 336 ggcccggcgccatcgagatcgcatccg 362 | ||||||| | || |||| ||||||| Sbjct: 366 gacccggcggcttccagatagcatccg 392
>dbj|AK059969.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-G08, full insert sequence Length = 1048 Score = 54.0 bits (27), Expect = 5e-04 Identities = 72/87 (82%) Strand = Plus / Plus Query: 276 gatggattcttgagcccgcaggagacggcgactggaaacacatcggctaccgcgtcgccc 335 ||||| |||| ||||| |||||||||||||| ||| || ||||| ||||||||||| | Sbjct: 363 gatgggttctcgagcctgcaggagacggcgattggcgtcatatcgggtaccgcgtcgcac 422 Query: 336 ggcccggcgccatcgagatcgcatccg 362 | ||||||| | || |||| ||||||| Sbjct: 423 gacccggcggcttccagatagcatccg 449
>gb|AC123525.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15, complete sequence Length = 147941 Score = 48.1 bits (24), Expect = 0.028 Identities = 60/72 (83%) Strand = Plus / Minus Query: 293 gcaggagacggcgactggaaacacatcggctaccgcgtcgcccggcccggcgccatcgag 352 |||||||||||||| ||| || ||||| ||||||||||| || ||||||| | || || Sbjct: 108696 gcaggagacggcgattggcgtcatatcgggtaccgcgtcgcacgacccggcggcttccag 108637 Query: 353 atcgcatccgta 364 || ||||||||| Sbjct: 108636 atagcatccgta 108625
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 48.1 bits (24), Expect = 0.028 Identities = 60/72 (83%) Strand = Plus / Plus Query: 293 gcaggagacggcgactggaaacacatcggctaccgcgtcgcccggcccggcgccatcgag 352 |||||||||||||| ||| || ||||| ||||||||||| || ||||||| | || || Sbjct: 1156315 gcaggagacggcgattggcgtcatatcgggtaccgcgtcgcacgacccggcggcttccag 1156374 Query: 353 atcgcatccgta 364 || ||||||||| Sbjct: 1156375 atagcatccgta 1156386
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 48.1 bits (24), Expect = 0.028 Identities = 60/72 (83%) Strand = Plus / Plus Query: 293 gcaggagacggcgactggaaacacatcggctaccgcgtcgcccggcccggcgccatcgag 352 |||||||||||||| ||| || ||||| ||||||||||| || ||||||| | || || Sbjct: 1281919 gcaggagacggcgattggcgtcatatcgggtaccgcgtcgcacgacccggcggcttccag 1281978 Query: 353 atcgcatccgta 364 || ||||||||| Sbjct: 1281979 atagcatccgta 1281990
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 48.1 bits (24), Expect = 0.028 Identities = 60/72 (83%) Strand = Plus / Plus Query: 293 gcaggagacggcgactggaaacacatcggctaccgcgtcgcccggcccggcgccatcgag 352 |||||||||||||| ||| || ||||| ||||||||||| || ||||||| | || || Sbjct: 1279640 gcaggagacggcgattggcgtcatatcgggtaccgcgtcgcacgacccggcggcttccag 1279699 Query: 353 atcgcatccgta 364 || ||||||||| Sbjct: 1279700 atagcatccgta 1279711
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 48.1 bits (24), Expect = 0.028 Identities = 60/72 (83%) Strand = Plus / Plus Query: 293 gcaggagacggcgactggaaacacatcggctaccgcgtcgcccggcccggcgccatcgag 352 |||||||||||||| ||| || ||||| ||||||||||| || ||||||| | || || Sbjct: 1156315 gcaggagacggcgattggcgtcatatcgggtaccgcgtcgcacgacccggcggcttccag 1156374 Query: 353 atcgcatccgta 364 || ||||||||| Sbjct: 1156375 atagcatccgta 1156386
>emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 126974 Score = 48.1 bits (24), Expect = 0.028 Identities = 60/72 (83%) Strand = Plus / Plus Query: 293 gcaggagacggcgactggaaacacatcggctaccgcgtcgcccggcccggcgccatcgag 352 |||||||||||||| ||| || ||||| ||||||||||| || ||||||| | || || Sbjct: 95298 gcaggagacggcgattggcgtcatatcgggtaccgcgtcgcacgacccggcggcttccag 95357 Query: 353 atcgcatccgta 364 || ||||||||| Sbjct: 95358 atagcatccgta 95369
>ref|NM_189840.2| Oryza sativa (japonica cultivar-group), mRNA Length = 731 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 190 gagcacaagaagaagcagcagca 212 ||||||||||||||||||||||| Sbjct: 96 gagcacaagaagaagcagcagca 118
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 190 gagcacaagaagaagcagcagca 212 ||||||||||||||||||||||| Sbjct: 25531543 gagcacaagaagaagcagcagca 25531565 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 cgcgtcgcccggcccggcgcc 346 ||||||||||||||||||||| Sbjct: 7533441 cgcgtcgcccggcccggcgcc 7533461
>dbj|AP004309.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0560B08 Length = 128098 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 190 gagcacaagaagaagcagcagca 212 ||||||||||||||||||||||| Sbjct: 68813 gagcacaagaagaagcagcagca 68835
>dbj|AK062716.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-C08, full insert sequence Length = 731 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 190 gagcacaagaagaagcagcagca 212 ||||||||||||||||||||||| Sbjct: 96 gagcacaagaagaagcagcagca 118
>gb|BC035798.1| Homo sapiens similar to expressed sequence AI593442, mRNA (cDNA clone IMAGE:5735100), partial cds Length = 2430 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 226 gtgctcctccgcctccaccggcagcc 251 |||||||||||||||||||| ||||| Sbjct: 808 gtgctcctccgcctccaccgccagcc 833
>emb|AL354898.10| Human DNA sequence from clone RP11-618A20 on chromosome 9 Contains a novel gene (DKFZp434P0216), the ASS gene for argininosuccinate synthetase (ASS1,CTLN1) and three CpG islands, complete sequence Length = 173023 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 191 agcacaagaagaagcagcagca 212 |||||||||||||||||||||| Sbjct: 26705 agcacaagaagaagcagcagca 26684
>gb|BC068577.1| Homo sapiens similar to expressed sequence AI593442, mRNA (cDNA clone MGC:87557 IMAGE:4818568), complete cds Length = 2355 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 226 gtgctcctccgcctccaccggcagcc 251 |||||||||||||||||||| ||||| Sbjct: 861 gtgctcctccgcctccaccgccagcc 886
>emb|BX932778.2| Gallus gallus finished cDNA, clone ChEST479i21 Length = 818 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 225 ggtgctcctccgcctccaccggcagc 250 |||||||||||||||||||| ||||| Sbjct: 463 ggtgctcctccgcctccaccagcagc 438
>dbj|AB055278.1| Macaca fascicularis brain cDNA, clone:QflA-11381, similar to human hypothetical protein LOC399947, mRNA, NM_207645 Length = 2015 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 226 gtgctcctccgcctccaccggcagcc 251 |||||||||||||||||||| ||||| Sbjct: 825 gtgctcctccgcctccaccgccagcc 850
>ref|NM_207645.1| Homo sapiens similar to expressed sequence AI593442 (LOC399947), mRNA Length = 2355 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 226 gtgctcctccgcctccaccggcagcc 251 |||||||||||||||||||| ||||| Sbjct: 861 gtgctcctccgcctccaccgccagcc 886
>dbj|AP000775.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-708B6, complete sequence Length = 189955 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 226 gtgctcctccgcctccaccggcagcc 251 |||||||||||||||||||| ||||| Sbjct: 137235 gtgctcctccgcctccaccgccagcc 137260
>gb|AC147095.2| Pan troglodytes BAC clone RP43-51E22 from 7, complete sequence Length = 152510 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 419 accaaaaagacaaaacaaaga 439 ||||||||||||||||||||| Sbjct: 73987 accaaaaagacaaaacaaaga 73967
>ref|NM_004609.3| Homo sapiens transcription factor 15 (basic helix-loop-helix) (TCF15), mRNA Length = 1227 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 430 aaaacaaagactgttggtgac 450 ||||||||||||||||||||| Sbjct: 858 aaaacaaagactgttggtgac 878
>gb|AC113597.12| Mus musculus chromosome 1, clone RP23-375F6, complete sequence Length = 224996 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 417 caaccaaaaagacaaaacaaa 437 ||||||||||||||||||||| Sbjct: 152651 caaccaaaaagacaaaacaaa 152671
>gb|AC092213.4| Homo sapiens BAC clone RP11-190I6 from 7, complete sequence Length = 137237 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 419 accaaaaagacaaaacaaaga 439 ||||||||||||||||||||| Sbjct: 4297 accaaaaagacaaaacaaaga 4277
>emb|AL590683.16| Human DNA sequence from clone RP11-10N16 on chromosome 1 Contains the 5' end of the IL22RA1 gene for interleukin 22 receptor alpha 1, the IL28RA gene for interleukin 28 receptor alpha (interferon, lambda receptor), a novel gene and the 3' end of a novel gene, complete sequence Length = 164684 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 417 caaccaaaaagacaaaacaaa 437 ||||||||||||||||||||| Sbjct: 88086 caaccaaaaagacaaaacaaa 88106
>emb|AL133231.15| Human DNA sequence from clone RP5-867F11 on chromosome 20 Contains the TCF15 gene for transcription factor 15 (basic helix-loop-helix) and a CpG island, complete sequence Length = 50488 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 430 aaaacaaagactgttggtgac 450 ||||||||||||||||||||| Sbjct: 38880 aaaacaaagactgttggtgac 38860
>gb|BC067836.1| Homo sapiens transcription factor 15 (basic helix-loop-helix), mRNA (cDNA clone IMAGE:30347726), partial cds Length = 1483 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 430 aaaacaaagactgttggtgac 450 ||||||||||||||||||||| Sbjct: 901 aaaacaaagactgttggtgac 921
>gb|AC150313.7| Mus musculus BAC clone RP23-436A18 from chromosome 7, complete sequence Length = 204095 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 ggaggcagtggcagcagcggc 54 ||||||||||||||||||||| Sbjct: 184838 ggaggcagtggcagcagcggc 184858
>emb|AJ130845.1|CCO130845 Coturnix coturnix mRNA for pim-3 protein Length = 1534 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 242 accggcagcccgtcggccgtc 262 ||||||||||||||||||||| Sbjct: 299 accggcagcccgtcggccgtc 279
>dbj|AK120395.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075G01, full insert sequence Length = 3213 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 326 cgcgtcgcccggcccggcgcc 346 ||||||||||||||||||||| Sbjct: 2617 cgcgtcgcccggcccggcgcc 2597
>dbj|AP005246.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0061L20 Length = 138926 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 cgcgtcgcccggcccggcgcc 346 ||||||||||||||||||||| Sbjct: 111755 cgcgtcgcccggcccggcgcc 111775
>dbj|AP004303.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0407H12 Length = 167754 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 326 cgcgtcgcccggcccggcgcc 346 ||||||||||||||||||||| Sbjct: 38851 cgcgtcgcccggcccggcgcc 38871
>emb|AL772172.18| Mouse DNA sequence from clone RP23-478A2 on chromosome 4, complete sequence Length = 160595 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 450 cgccaggcatgacaggcatct 470 ||||||||||||||||||||| Sbjct: 116079 cgccaggcatgacaggcatct 116099
>gb|AC151414.2| Mus musculus BAC clone RP23-44E14 from 7, complete sequence Length = 190050 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 ggaggcagtggcagcagcggc 54 ||||||||||||||||||||| Sbjct: 110977 ggaggcagtggcagcagcggc 110957
>gb|U08336.1|HSU08336 Human basic helix-loop-helix transcription factor mRNA, complete cds Length = 963 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 430 aaaacaaagactgttggtgac 450 ||||||||||||||||||||| Sbjct: 859 aaaacaaagactgttggtgac 879
>gb|AC129093.34| Mus musculus strain C57BL/6J clone rp23-198m10 map 19, complete sequence Length = 190697 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 aaccaaaaagacaaaacaaa 437 |||||||||||||||||||| Sbjct: 141628 aaccaaaaagacaaaacaaa 141647
>gb|BC085387.1| Danio rerio zgc:101614, mRNA (cDNA clone MGC:101614 IMAGE:7224720), complete cds Length = 2245 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 tctgtcttgctgtcgttttc 81 |||||||||||||||||||| Sbjct: 632 tctgtcttgctgtcgttttc 651
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 gtgctcctccgcctccaccg 245 |||||||||||||||||||| Sbjct: 930995 gtgctcctccgcctccaccg 931014
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 ccgcgtcgcccggcccggcg 344 |||||||||||||||||||| Sbjct: 2596318 ccgcgtcgcccggcccggcg 2596299
>ref|XM_360206.1| Magnaporthe grisea 70-15 hypothetical protein (MG05580.4) partial mRNA Length = 1974 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 ccggcccggcgccatcgaga 353 |||||||||||||||||||| Sbjct: 1182 ccggcccggcgccatcgaga 1201
>ref|XM_415827.1| PREDICTED: Gallus gallus similar to myosin 18A isoform a; myosin 18A; myosin containing PDZ domain (LOC417581), mRNA Length = 7860 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 gcacaagaagaagcagcagc 211 |||||||||||||||||||| Sbjct: 2709 gcacaagaagaagcagcagc 2728
>ref|XM_453439.1| Kluyveromyces lactis NRRL Y-1140, KLLA0D08459g predicted mRNA Length = 2253 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 acaagaagaagcagcagcat 213 |||||||||||||||||||| Sbjct: 825 acaagaagaagcagcagcat 806
>gb|AC117656.13| Mus musculus chromosome 14, clone RP23-298L3, complete sequence Length = 228361 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 aaccaaaaagacaaaacaaa 437 |||||||||||||||||||| Sbjct: 130062 aaccaaaaagacaaaacaaa 130043
>gb|AC132317.2| Mus musculus BAC clone RP24-241J19 from chromosome 15, complete sequence Length = 171980 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 aaccaaaaagacaaaacaaa 437 |||||||||||||||||||| Sbjct: 99548 aaccaaaaagacaaaacaaa 99567
>gb|AC122414.4| Mus musculus BAC clone RP24-150D8 from chromosome 5, complete sequence Length = 186986 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 tccagccccaggagatcaac 99 |||||||||||||||||||| Sbjct: 106521 tccagccccaggagatcaac 106502
>gb|AC125161.3| Mus musculus BAC clone RP24-410I2 from chromosome 1, complete sequence Length = 142794 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 acaagaagaagcagcagcat 213 |||||||||||||||||||| Sbjct: 137811 acaagaagaagcagcagcat 137792
>gb|AE014309.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 6 of 11 of the complete sequence Length = 250029 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 aaccaaaaagacaaaacaaa 437 |||||||||||||||||||| Sbjct: 49070 aaccaaaaagacaaaacaaa 49051
>gb|AC122191.4| Mus musculus BAC clone RP23-42J4 from 6, complete sequence Length = 250147 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 aaccaaaaagacaaaacaaa 437 |||||||||||||||||||| Sbjct: 91637 aaccaaaaagacaaaacaaa 91618
>ref|XM_801319.1| Trypanosoma cruzi strain CL Brener trans-sialidase (Tc00.1047053511197.10) partial mRNA Length = 1862 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 193 cacaagaagaagcagcagcatcct 216 ||||||||| |||||||||||||| Sbjct: 1832 cacaagaagcagcagcagcatcct 1809
>gb|AC107761.9| Mus musculus chromosome 7, clone RP23-184M3, complete sequence Length = 216757 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 aaccaaaaagacaaaacaaa 437 |||||||||||||||||||| Sbjct: 68245 aaccaaaaagacaaaacaaa 68226
>gb|AC163496.4| Mus musculus chromosome 1, clone RP24-325M15, complete sequence Length = 165387 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 acaagaagaagcagcagcat 213 |||||||||||||||||||| Sbjct: 99162 acaagaagaagcagcagcat 99143
>emb|AL807246.11| Human DNA sequence from clone RP11-461H3 on chromosome 6 Contains the 5' end of the UST gene for uronyl-2-sulfotransferase, a laminin receptor 1 (ribosomal protein SA, 67 kDa) (LAMR1) pseudogene and a CpG island, complete sequence Length = 124214 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 aagaagaagcagcagcatcc 215 |||||||||||||||||||| Sbjct: 121493 aagaagaagcagcagcatcc 121512
>emb|AL954774.1| Human DNA sequence from clone RP11-213G1 on chromosome 1, complete sequence Length = 10118 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 aaaaagacaaaacaaagact 441 |||||||||||||||||||| Sbjct: 5728 aaaaagacaaaacaaagact 5709
>emb|AL603713.6| Human DNA sequence from clone RP11-17C16 on chromosome 13, complete sequence Length = 83989 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 aaccaaaaagacaaaacaaa 437 |||||||||||||||||||| Sbjct: 27706 aaccaaaaagacaaaacaaa 27687
>emb|AL445232.5| Human DNA sequence from clone RP11-71J12 on chromosome 13 Contains the 3' end of a novel gene (contains FLJ31860 and KIAA0853), possible ortholog of mouse 3110050K21Rik protein, complete sequence Length = 148103 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 tgagcacaagaagaagcagcagca 212 |||||||| ||||||||||||||| Sbjct: 82792 tgagcacatgaagaagcagcagca 82769
>gb|AC091752.2| Rattus norvegicus strain Brown Norway clone RP31-202M22, complete sequence Length = 109982 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 acaaaacaaagactgttggt 447 |||||||||||||||||||| Sbjct: 77206 acaaaacaaagactgttggt 77225
>ref|XM_787670.1| PREDICTED: Strongylocentrotus purpuratus similar to PAR-6 gamma protein (LOC587966), mRNA Length = 1068 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 caagaagaagcagcagcatc 214 |||||||||||||||||||| Sbjct: 726 caagaagaagcagcagcatc 745
>ref|XM_778002.1| PREDICTED: Strongylocentrotus purpuratus similar to par-6 (partitioning defective 6) homolog beta (LOC577793), mRNA Length = 1142 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 caagaagaagcagcagcatc 214 |||||||||||||||||||| Sbjct: 549 caagaagaagcagcagcatc 568
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome Length = 5205140 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 ctcctccgcctccaccggca 248 |||||||||||||||||||| Sbjct: 3771190 ctcctccgcctccaccggca 3771209
>emb|CR382124.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome D of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1715506 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 acaagaagaagcagcagcat 213 |||||||||||||||||||| Sbjct: 719474 acaagaagaagcagcagcat 719493
>emb|BX842579.1| Mycobacterium tuberculosis H37Rv complete genome; segment 8/13 Length = 348247 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 ccgcgtcgcccggcccggcg 344 |||||||||||||||||||| Sbjct: 175634 ccgcgtcgcccggcccggcg 175615
>gb|AC161482.6| Mus musculus chromosome 1, clone RP23-415K20, complete sequence Length = 190103 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 aaccaaaaagacaaaacaaa 437 |||||||||||||||||||| Sbjct: 40990 aaccaaaaagacaaaacaaa 41009
>emb|BX248342.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 9/14 Length = 306550 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 ccgcgtcgcccggcccggcg 344 |||||||||||||||||||| Sbjct: 67068 ccgcgtcgcccggcccggcg 67049
>emb|AJ630366.1| Canis familiaris MHC class II region on chromosome CFA12, partial sequence, BAC clone 21p19, containing partial col11a2 gene, RXRB, SLC39A7, HSD17B8, RING1, VPS52, RPS18 and B3GALT4 genes, C12H6orf11 ORF, KE2, RAB2L, TAPBP, ZNF297 and DAXX genes Length = 143626 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 368 gctcctcgtccattcttgatctcc 391 ||||||| |||||||||||||||| Sbjct: 18971 gctcctcttccattcttgatctcc 18948
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 acatcggctaccgcgtcgcc 334 |||||||||||||||||||| Sbjct: 1172783 acatcggctaccgcgtcgcc 1172802
>gb|AF312856.1| Pestivirus isolate Hay 87/2210 non-structural protein 3 helicase gene, partial cds Length = 1484 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 agccccaggagatcaacggc 102 |||||||||||||||||||| Sbjct: 1377 agccccaggagatcaacggc 1358
>ref|NM_005715.1| Homo sapiens uronyl-2-sulfotransferase (UST), mRNA Length = 4196 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 aagaagaagcagcagcatcc 215 |||||||||||||||||||| Sbjct: 107 aagaagaagcagcagcatcc 126
>gb|AC126033.4| Mus musculus BAC clone RP24-115A22 from chromosome 14, complete sequence Length = 154626 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 aaccaaaaagacaaaacaaa 437 |||||||||||||||||||| Sbjct: 41250 aaccaaaaagacaaaacaaa 41231
>gb|AC158124.6| Mus musculus chromosome 7, clone RP24-71O4, complete sequence Length = 156165 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 aaccaaaaagacaaaacaaa 437 |||||||||||||||||||| Sbjct: 44829 aaccaaaaagacaaaacaaa 44848
>gb|BC093694.1| Homo sapiens uronyl-2-sulfotransferase, mRNA (cDNA clone MGC:120729 IMAGE:7939539), complete cds Length = 1292 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 aagaagaagcagcagcatcc 215 |||||||||||||||||||| Sbjct: 52 aagaagaagcagcagcatcc 71
>gb|BC093668.1| Homo sapiens uronyl-2-sulfotransferase, mRNA (cDNA clone MGC:120703 IMAGE:7939513), complete cds Length = 1289 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 aagaagaagcagcagcatcc 215 |||||||||||||||||||| Sbjct: 52 aagaagaagcagcagcatcc 71
>gb|AC098853.2| Homo sapiens BAC clone RP11-343D12 from 2, complete sequence Length = 95180 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 ccaaaaagacaaaacaaaga 439 |||||||||||||||||||| Sbjct: 34418 ccaaaaagacaaaacaaaga 34399
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 ccgcgtcgcccggcccggcg 344 |||||||||||||||||||| Sbjct: 1074932 ccgcgtcgcccggcccggcg 1074951
>ref|NM_001007452.1| Danio rerio zgc:101614 (zgc:101614), mRNA Length = 2245 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 tctgtcttgctgtcgttttc 81 |||||||||||||||||||| Sbjct: 632 tctgtcttgctgtcgttttc 651
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome Length = 5277274 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 ctcctccgcctccaccggca 248 |||||||||||||||||||| Sbjct: 3864484 ctcctccgcctccaccggca 3864503
>gb|AC012039.10|AC012039 Homo sapiens 3 BAC RP11-154F9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 156673 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 tgagcacaagaagaagcagcagca 212 |||||||| ||||||||||||||| Sbjct: 349 tgagcacatgaagaagcagcagca 372
>dbj|AP000925.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-759M17, complete sequence Length = 177831 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 aaccaaaaagacaaaacaaa 437 |||||||||||||||||||| Sbjct: 121033 aaccaaaaagacaaaacaaa 121014
>gb|AC152181.1| Mus musculus BAC clone RP24-321P19 from 15, complete sequence Length = 187733 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 aaccaaaaagacaaaacaaa 437 |||||||||||||||||||| Sbjct: 32897 aaccaaaaagacaaaacaaa 32878
>gb|AC148326.2| Mus musculus BAC clone RP24-377D18 from 6, complete sequence Length = 177503 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 aaccaaaaagacaaaacaaa 437 |||||||||||||||||||| Sbjct: 23019 aaccaaaaagacaaaacaaa 23038
>emb|CT025584.18| Mouse DNA sequence from clone RP23-78N7 on chromosome 16, complete sequence Length = 209542 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 421 caaaaagacaaaacaaagac 440 |||||||||||||||||||| Sbjct: 195462 caaaaagacaaaacaaagac 195481
>gb|AC170255.8| Mus musculus chromosome 1, clone RP23-359K18, complete sequence Length = 226189 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 aaccaaaaagacaaaacaaa 437 |||||||||||||||||||| Sbjct: 30619 aaccaaaaagacaaaacaaa 30638
>gb|AC171328.2| Mus musculus chromosome 1, clone wi1-817D1, complete sequence Length = 41955 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 aaccaaaaagacaaaacaaa 437 |||||||||||||||||||| Sbjct: 21349 aaccaaaaagacaaaacaaa 21330
>dbj|AB020316.1| Homo sapiens mRNA for dermatan/chondroitin sulfate 2-sulfotransferase, complete cds Length = 4196 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 aagaagaagcagcagcatcc 215 |||||||||||||||||||| Sbjct: 107 aagaagaagcagcagcatcc 126
>emb|AL731554.13| Mouse DNA sequence from clone RP23-337H1 on chromosome 5, complete sequence Length = 159200 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 aaccaaaaagacaaaacaaa 437 |||||||||||||||||||| Sbjct: 139430 aaccaaaaagacaaaacaaa 139449 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,517,033 Number of Sequences: 3902068 Number of extensions: 4517033 Number of successful extensions: 107582 Number of sequences better than 10.0: 90 Number of HSP's better than 10.0 without gapping: 91 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 106795 Number of HSP's gapped (non-prelim): 786 length of query: 508 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 486 effective length of database: 17,147,199,772 effective search space: 8333539089192 effective search space used: 8333539089192 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)