ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal25b11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_480940.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2141 Score = 194 bits (98), Expect = 1e-46 Identities = 173/196 (88%), Gaps = 2/196 (1%) Strand = Plus / Plus Query: 116 tacgcgtcgaacccaatgttgccgcagccactggagcaatgttacattcattgttaagct 175 ||||| || |||||||||||||| ||||| ||| ||||||||||| |||||||||||||| Sbjct: 1637 tacgcatcaaacccaatgttgccacagccgctg-agcaatgttacgttcattgttaagct 1695 Query: 176 tcctgtgggatccaactctgcttaatgtttctcccaaggccgtgttgaaccgggcagaga 235 |||||||| | ||||||||||| |||||||| |||||||| ||| |||| |||||||||| Sbjct: 1696 tcctgtgg-acccaactctgctaaatgtttcacccaaggctgtgctgaatcgggcagaga 1754 Query: 236 gggagctcangtggcacatctcanacattcctctgaaaggtcccgctggacggttgagag 295 ||||||||| |||||||||| || ||||||| |||||||| || |||||||| ||||| | Sbjct: 1755 gggagctcaggtggcacatcccagacattcccctgaaaggacctgctggacgtttgaggg 1814 Query: 296 cacggatgcccgtaga 311 | |||||||| ||||| Sbjct: 1815 ctcggatgcctgtaga 1830
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 194 bits (98), Expect = 1e-46 Identities = 173/196 (88%), Gaps = 2/196 (1%) Strand = Plus / Minus Query: 116 tacgcgtcgaacccaatgttgccgcagccactggagcaatgttacattcattgttaagct 175 ||||| || |||||||||||||| ||||| ||| ||||||||||| |||||||||||||| Sbjct: 8789850 tacgcatcaaacccaatgttgccacagccgctg-agcaatgttacgttcattgttaagct 8789792 Query: 176 tcctgtgggatccaactctgcttaatgtttctcccaaggccgtgttgaaccgggcagaga 235 |||||||| | ||||||||||| |||||||| |||||||| ||| |||| |||||||||| Sbjct: 8789791 tcctgtgg-acccaactctgctaaatgtttcacccaaggctgtgctgaatcgggcagaga 8789733 Query: 236 gggagctcangtggcacatctcanacattcctctgaaaggtcccgctggacggttgagag 295 ||||||||| |||||||||| || ||||||| |||||||| || |||||||| ||||| | Sbjct: 8789732 gggagctcaggtggcacatcccagacattcccctgaaaggacctgctggacgtttgaggg 8789673 Query: 296 cacggatgcccgtaga 311 | |||||||| ||||| Sbjct: 8789672 ctcggatgcctgtaga 8789657
>dbj|AP004690.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0437G01 Length = 147101 Score = 194 bits (98), Expect = 1e-46 Identities = 173/196 (88%), Gaps = 2/196 (1%) Strand = Plus / Minus Query: 116 tacgcgtcgaacccaatgttgccgcagccactggagcaatgttacattcattgttaagct 175 ||||| || |||||||||||||| ||||| ||| ||||||||||| |||||||||||||| Sbjct: 67599 tacgcatcaaacccaatgttgccacagccgctg-agcaatgttacgttcattgttaagct 67541 Query: 176 tcctgtgggatccaactctgcttaatgtttctcccaaggccgtgttgaaccgggcagaga 235 |||||||| | ||||||||||| |||||||| |||||||| ||| |||| |||||||||| Sbjct: 67540 tcctgtgg-acccaactctgctaaatgtttcacccaaggctgtgctgaatcgggcagaga 67482 Query: 236 gggagctcangtggcacatctcanacattcctctgaaaggtcccgctggacggttgagag 295 ||||||||| |||||||||| || ||||||| |||||||| || |||||||| ||||| | Sbjct: 67481 gggagctcaggtggcacatcccagacattcccctgaaaggacctgctggacgtttgaggg 67422 Query: 296 cacggatgcccgtaga 311 | |||||||| ||||| Sbjct: 67421 ctcggatgcctgtaga 67406
>dbj|AP005478.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0070J06 Length = 142303 Score = 194 bits (98), Expect = 1e-46 Identities = 173/196 (88%), Gaps = 2/196 (1%) Strand = Plus / Minus Query: 116 tacgcgtcgaacccaatgttgccgcagccactggagcaatgttacattcattgttaagct 175 ||||| || |||||||||||||| ||||| ||| ||||||||||| |||||||||||||| Sbjct: 132829 tacgcatcaaacccaatgttgccacagccgctg-agcaatgttacgttcattgttaagct 132771 Query: 176 tcctgtgggatccaactctgcttaatgtttctcccaaggccgtgttgaaccgggcagaga 235 |||||||| | ||||||||||| |||||||| |||||||| ||| |||| |||||||||| Sbjct: 132770 tcctgtgg-acccaactctgctaaatgtttcacccaaggctgtgctgaatcgggcagaga 132712 Query: 236 gggagctcangtggcacatctcanacattcctctgaaaggtcccgctggacggttgagag 295 ||||||||| |||||||||| || ||||||| |||||||| || |||||||| ||||| | Sbjct: 132711 gggagctcaggtggcacatcccagacattcccctgaaaggacctgctggacgtttgaggg 132652 Query: 296 cacggatgcccgtaga 311 | |||||||| ||||| Sbjct: 132651 ctcggatgcctgtaga 132636
>dbj|AK121452.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142L20, full insert sequence Length = 2149 Score = 194 bits (98), Expect = 1e-46 Identities = 173/196 (88%), Gaps = 2/196 (1%) Strand = Plus / Plus Query: 116 tacgcgtcgaacccaatgttgccgcagccactggagcaatgttacattcattgttaagct 175 ||||| || |||||||||||||| ||||| ||| ||||||||||| |||||||||||||| Sbjct: 1639 tacgcatcaaacccaatgttgccacagccgctg-agcaatgttacgttcattgttaagct 1697 Query: 176 tcctgtgggatccaactctgcttaatgtttctcccaaggccgtgttgaaccgggcagaga 235 |||||||| | ||||||||||| |||||||| |||||||| ||| |||| |||||||||| Sbjct: 1698 tcctgtgg-acccaactctgctaaatgtttcacccaaggctgtgctgaatcgggcagaga 1756 Query: 236 gggagctcangtggcacatctcanacattcctctgaaaggtcccgctggacggttgagag 295 ||||||||| |||||||||| || ||||||| |||||||| || |||||||| ||||| | Sbjct: 1757 gggagctcaggtggcacatcccagacattcccctgaaaggacctgctggacgtttgaggg 1816 Query: 296 cacggatgcccgtaga 311 | |||||||| ||||| Sbjct: 1817 ctcggatgcctgtaga 1832
>dbj|AK102707.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033104B11, full insert sequence Length = 2141 Score = 194 bits (98), Expect = 1e-46 Identities = 173/196 (88%), Gaps = 2/196 (1%) Strand = Plus / Plus Query: 116 tacgcgtcgaacccaatgttgccgcagccactggagcaatgttacattcattgttaagct 175 ||||| || |||||||||||||| ||||| ||| ||||||||||| |||||||||||||| Sbjct: 1637 tacgcatcaaacccaatgttgccacagccgctg-agcaatgttacgttcattgttaagct 1695 Query: 176 tcctgtgggatccaactctgcttaatgtttctcccaaggccgtgttgaaccgggcagaga 235 |||||||| | ||||||||||| |||||||| |||||||| ||| |||| |||||||||| Sbjct: 1696 tcctgtgg-acccaactctgctaaatgtttcacccaaggctgtgctgaatcgggcagaga 1754 Query: 236 gggagctcangtggcacatctcanacattcctctgaaaggtcccgctggacggttgagag 295 ||||||||| |||||||||| || ||||||| |||||||| || |||||||| ||||| | Sbjct: 1755 gggagctcaggtggcacatcccagacattcccctgaaaggacctgctggacgtttgaggg 1814 Query: 296 cacggatgcccgtaga 311 | |||||||| ||||| Sbjct: 1815 ctcggatgcctgtaga 1830
>gb|AY105218.1| Zea mays PCO148558 mRNA sequence Length = 743 Score = 119 bits (60), Expect = 6e-24 Identities = 144/170 (84%), Gaps = 2/170 (1%) Strand = Plus / Plus Query: 109 gatacactacgcgtcgaacccaatgttgccgcagccactggagcaatgttacattcattg 168 |||||| ||||| || || |||||| |||| ||||| ||| ||||||||||||||| ||| Sbjct: 232 gatacagtacgcatccaatccaatgctgccccagcctctg-agcaatgttacattcgttg 290 Query: 169 ttaagcttcctgtgggatccaactctgcttaatgtttctcccaaggccgtgttgaaccgg 228 ||||||||||||| |||||| |||||||| |||||||| |||||||| ||| | |||||| Sbjct: 291 ttaagcttcctgt-ggatcctactctgctcaatgtttcacccaaggctgtgctaaaccgg 349 Query: 229 gcagagagggagctcangtggcacatctcanacattcctctgaaaggtcc 278 ||||||| ||| | | ||||| || ||| ||||||| ||||||||||| Sbjct: 350 gcagagaaagagtttagatggcatatttcagacattcccctgaaaggtcc 399
>gb|DQ242512.1| Neurospora crassa CSN-4 (NCU07361) mRNA, complete cds Length = 1323 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 cgcgtcgaacccaatgttgc 137 |||||||||||||||||||| Sbjct: 1026 cgcgtcgaacccaatgttgc 1007
>ref|XM_953041.1| Neurospora crassa OR74A hypothetical protein (NCU07361.1) partial mRNA Length = 1323 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 cgcgtcgaacccaatgttgc 137 |||||||||||||||||||| Sbjct: 1026 cgcgtcgaacccaatgttgc 1007
>ref|XM_327646.1| Neurospora crassa OR74A hypothetical protein (NCU07361.1) partial mRNA Length = 1323 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 cgcgtcgaacccaatgttgc 137 |||||||||||||||||||| Sbjct: 1026 cgcgtcgaacccaatgttgc 1007
>emb|AL139405.11| Human DNA sequence from clone RP11-393E10 on chromosome 10 Contains the 5' end of a variant of the gene for a novel protein (FLJ10210) and the 3' end of the gene for a novel protein (MGC11034), complete sequence Length = 179829 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 172 agcttcctgtgggatccaactctg 195 |||||||||||||| ||||||||| Sbjct: 61401 agcttcctgtgggaaccaactctg 61424
>dbj|AB084378.1| Euphausia superba mitochondrial DNA, trnM to rrnS gene region Length = 14606 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 cattcattgttaagcttcct 179 |||||||||||||||||||| Sbjct: 8802 cattcattgttaagcttcct 8783 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,024,142 Number of Sequences: 3902068 Number of extensions: 2024142 Number of successful extensions: 33146 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33112 Number of HSP's gapped (non-prelim): 20 length of query: 314 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 292 effective length of database: 17,147,199,772 effective search space: 5006982333424 effective search space used: 5006982333424 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
