ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal25a18 |
|---|---|
| Clone Library Name | barley_pub |
>VMD2_MOUSE (O88870) Bestrophin-1 (Vitelliform macular dystrophy protein 2| homolog) Length = 551 Score = 33.1 bits (74), Expect = 0.62 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 2/93 (2%) Frame = +1 Query: 13 QYPWDRNSVRDRMHQMQYQSWTMFLQSQSL--WDTSDADTEKSHSDSTSQAAASSNESLN 186 Q P+ S R R H ++ + L+ + L W +ADT+K S +S Sbjct: 344 QPPYTAASARSRRHSFMGSTFNISLKKEDLELWSKEEADTDKKESGYSSTIGCFLG---L 400 Query: 187 HPANIHIVLKYVASLLEMPEAELAETSYRNATK 285 P N H+ LK + + L + L E ++A + Sbjct: 401 QPKNYHLPLKDLKTKLLCSKNPLLEGQCKDANQ 433
>RPTN_MOUSE (P97347) Repetin| Length = 1130 Score = 33.1 bits (74), Expect = 0.62 Identities = 18/61 (29%), Positives = 28/61 (45%) Frame = +1 Query: 22 WDRNSVRDRMHQMQYQSWTMFLQSQSLWDTSDADTEKSHSDSTSQAAASSNESLNHPANI 201 WDR+SV D+ + + Q+W + QS TSD T + Q + E+ +H Sbjct: 971 WDRHSVEDQENLYEMQNWQTHEEEQS-HQTSDRQTHVDEQNQQRQHRQTHEENHDHQHGR 1029 Query: 202 H 204 H Sbjct: 1030 H 1030
>Y1582_METJA (Q58977) Putative deoxyribonuclease MJ1582 (EC 3.1.21.-)| Length = 249 Score = 32.3 bits (72), Expect = 1.1 Identities = 15/57 (26%), Positives = 29/57 (50%) Frame = +1 Query: 121 DTEKSHSDSTSQAAASSNESLNHPANIHIVLKYVASLLEMPEAELAETSYRNATKLF 291 D E +++ S + + N P N+ +V++ +A + EM E+ + Y+N K F Sbjct: 189 DLEYLTTETDSPYLSPIKGTKNEPKNVKLVIEEIAKIKEMEVEEVKDVIYKNTCKFF 245
>TILS_RHOBA (Q7UNE1) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 397 Score = 31.6 bits (70), Expect = 1.8 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Frame = +1 Query: 7 SKQYPWDRNS-VRDRMHQMQYQSWTMFLQSQSLWDTSDADTEKSHSDSTSQAAASSNESL 183 + Q WDR R M +Q T + QS W TSD D STSQA + Sbjct: 324 ASQLAWDRLGWSRGSMTMQHWQRLTGLINDQSCWHTSDIDV------STSQAVDGIDHGG 377 Query: 184 NHPANI 201 + P I Sbjct: 378 HFPGGI 383
>VCAP_HHV6U (P17887) Major capsid protein (MCP)| Length = 1345 Score = 31.6 bits (70), Expect = 1.8 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 15/92 (16%) Frame = -3 Query: 550 DTATYVETRVIIWQHSSYEPLS-HFFLTATYL----------VLDRLYNYNNIHTVYRQH 404 D ET +++ +HS P++ F L+A L V+D++ N N +HTV R Sbjct: 105 DVTASKETTIMVAKHSEKHPINISFDLSAACLEHLENTFKNTVIDQILNINALHTVLRSL 164 Query: 403 QAERTRISMSMVHVRRP----PAPPQITQLQL 320 + + ++H +PPQ L + Sbjct: 165 KNSADSLERGLIHAFMQTLLRKSPPQFIVLTM 196
>PDC2_ORYSA (P51848) Pyruvate decarboxylase isozyme 2 (EC 4.1.1.1) (PDC)| Length = 603 Score = 30.8 bits (68), Expect = 3.1 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Frame = +1 Query: 163 ASSNESLNHPANIHIVLKYVASLLEMPEAELAET--SYRNATKLFSYPGSKVHHEAEAG* 336 AS+ E N P ++++ K+V +L A +AET S+ N KL G + + G Sbjct: 395 ASAGEEPNEPLRVNVLFKHVQKMLNSDSAVIAETGDSWFNCQKLKLPEGCGYEFQMQYGS 454 Query: 337 FG 342 G Sbjct: 455 IG 456
>POLN_FCVUR (Q66914) Non-structural polyprotein [Contains: p5.6; p32; Helicase| (2C-like protein) (p39); 3A-like protein (p30); Viral genome-linked protein (VPg) (p13); Thiol protease P3C (EC 3.4.22.-) (3C-like protease) (3C-pro); RNA-directed RNA polymera Length = 1763 Score = 30.8 bits (68), Expect = 3.1 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%) Frame = +1 Query: 112 SDADTEKSHSDSTSQAAASSNESLN---HPANIHIVLKYVASLLEMPEAELAETS 267 S+ +++ H D AA ++L+ HPAN+ + + + SLL M EA L + S Sbjct: 92 SEDTSDELHPDDLVNVAAHIRKALSTQSHPANVDMCKEQLTSLLVMAEAMLPQRS 146
>GLNA_SULAC (Q9HH09) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia| ligase) (GS) Length = 473 Score = 30.0 bits (66), Expect = 5.2 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = +3 Query: 291 LLPWIQGSPRS*SWVIWGGAGGR 359 L+PW+QG R + V WGG GR Sbjct: 83 LIPWMQGVARVLTKVFWGGGKGR 105
>SHC1_HUMAN (P29353) SHC transforming protein 1 (SH2 domain protein C1) (Src| homology 2 domain-containing transforming protein C1) Length = 583 Score = 29.3 bits (64), Expect = 8.9 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 2/23 (8%) Frame = -3 Query: 358 RPPAPPQITQL--QLRGEPWIQG 296 R P PPQ + QLRGEPW G Sbjct: 469 RVPPPPQSVSMAEQLRGEPWFHG 491
>FUT13_ARATH (Q9C8W3) Alpha-(1,4)-fucosyltransferase (EC 2.4.1.-) (FT4-M)| (Galactoside 3(4)-L-fucosyltransferase) (FucTC) (AtFUT13) Length = 401 Score = 29.3 bits (64), Expect = 8.9 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = +1 Query: 337 FGVGRVAVEHEPCSSKSWCVLPDVVCILYVCYC 435 FG G++ ++H K W +PD + LY C C Sbjct: 94 FGCGKLKMKHVKVLVKGWTWIPDNLENLYSCRC 126
>VCAP_HHV7J (P52347) Major capsid protein (MCP)| Length = 1345 Score = 29.3 bits (64), Expect = 8.9 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 15/86 (17%) Frame = -3 Query: 550 DTATYVETRVIIWQHSSYEP-----------LSHFFLTATYLVLDRLYNYNNIHTVYRQH 404 D ET V++ ++S P L+H T +LD++ N N IHTV R Sbjct: 105 DVTAPKETTVLVTKYSEKHPINISFELSAACLAHLENTFKNTILDQMLNINAIHTVLRSL 164 Query: 403 QAERTRISMSMVH----VRRPPAPPQ 338 + + +++ APPQ Sbjct: 165 KNSADSLQRGLIYAFIKTILKKAPPQ 190 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,770,569 Number of Sequences: 219361 Number of extensions: 1664250 Number of successful extensions: 4819 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4672 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4815 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
