ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal24k09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY137242.1| Oryza sativa (japonica cultivar-group) sucrose transporter SUT2 mRNA, complete cds Length = 1830 Score = 212 bits (107), Expect = 2e-52 Identities = 145/158 (91%) Strand = Plus / Plus Query: 1 ccggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccagactc 60 ||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||| | Sbjct: 243 ccggcgtgcagttcggctgggcgcttcagctctcgctcctcacgccctacatccagaccc 302 Query: 61 taggaatagaccatgccatggcgtccttcatttggctttgtgggcctattactggttttg 120 |||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||| Sbjct: 303 taggaatagaccatgccatggcatcattcatttggctttgtggacctattactggttttg 362 Query: 121 tcgttcaaccttgngttggagtctggagcgacaaatgc 158 | |||||||| || ||||| |||||||| ||||||||| Sbjct: 363 tggttcaaccatgtgttggtgtctggagtgacaaatgc 400
>dbj|AK065430.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023D24, full insert sequence Length = 2558 Score = 212 bits (107), Expect = 2e-52 Identities = 145/158 (91%) Strand = Plus / Plus Query: 1 ccggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccagactc 60 ||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||| | Sbjct: 488 ccggcgtgcagttcggctgggcgcttcagctctcgctcctcacgccctacatccagaccc 547 Query: 61 taggaatagaccatgccatggcgtccttcatttggctttgtgggcctattactggttttg 120 |||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||| Sbjct: 548 taggaatagaccatgccatggcatcattcatttggctttgtggacctattactggttttg 607 Query: 121 tcgttcaaccttgngttggagtctggagcgacaaatgc 158 | |||||||| || ||||| |||||||| ||||||||| Sbjct: 608 tggttcaaccatgtgttggtgtctggagtgacaaatgc 645
>dbj|AB091673.1| Oryza sativa (japonica cultivar-group) OsSUT4 mRNA for sucrose transporter, complete cds Length = 2158 Score = 212 bits (107), Expect = 2e-52 Identities = 145/158 (91%) Strand = Plus / Plus Query: 1 ccggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccagactc 60 ||||||||||||||||||||||||| |||||||| |||||||| || ||||||||||| | Sbjct: 248 ccggcgtgcagttcggctgggcgcttcagctctcgctcctcacgccctacatccagaccc 307 Query: 61 taggaatagaccatgccatggcgtccttcatttggctttgtgggcctattactggttttg 120 |||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||| Sbjct: 308 taggaatagaccatgccatggcatcattcatttggctttgtggacctattactggttttg 367 Query: 121 tcgttcaaccttgngttggagtctggagcgacaaatgc 158 | |||||||| || ||||| |||||||| ||||||||| Sbjct: 368 tggttcaaccatgtgttggtgtctggagtgacaaatgc 405
>gb|AY581895.1| Zea mays sucrose transporter 2 (SUT2) mRNA, complete cds Length = 2166 Score = 172 bits (87), Expect = 2e-40 Identities = 131/146 (89%) Strand = Plus / Plus Query: 3 ggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccagactcta 62 ||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| ||| Sbjct: 228 ggcgtccagttcggatgggcgctgcagctctccctccttacgccatacatccagacccta 287 Query: 63 ggaatagaccatgccatggcgtccttcatttggctttgtgggcctattactggttttgtc 122 |||||||||||||||||||| || || |||||| | ||||||||||| ||||||||||| Sbjct: 288 ggaatagaccatgccatggcatcatttatttggttgtgtgggcctataactggttttgtg 347 Query: 123 gttcaaccttgngttggagtctggag 148 ||||||||||| ||||| || ||||| Sbjct: 348 gttcaaccttgtgttggtgtttggag 373
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 103 bits (52), Expect = 2e-19 Identities = 64/68 (94%) Strand = Plus / Plus Query: 54 cagactctaggaatagaccatgccatggcgtccttcatttggctttgtgggcctattact 113 ||||| ||||||||||||||||||||||| || ||||||||||||||||| ||||||||| Sbjct: 35568300 cagaccctaggaatagaccatgccatggcatcattcatttggctttgtggacctattact 35568359 Query: 114 ggttttgt 121 |||||||| Sbjct: 35568360 ggttttgt 35568367 Score = 79.8 bits (40), Expect = 2e-12 Identities = 52/56 (92%) Strand = Plus / Plus Query: 1 ccggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccag 56 ||||||||||||||||||||||||| |||||||| |||||||| || ||||||||| Sbjct: 35567793 ccggcgtgcagttcggctgggcgcttcagctctcgctcctcacgccctacatccag 35567848 Score = 50.1 bits (25), Expect = 0.002 Identities = 31/33 (93%) Strand = Plus / Minus Query: 9 cagttcggctgggcgctgcagctctccctcctc 41 |||| |||||||||||||||||| ||||||||| Sbjct: 22169247 cagtacggctgggcgctgcagctgtccctcctc 22169215
>dbj|AP004776.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0452F04 Length = 171421 Score = 103 bits (52), Expect = 2e-19 Identities = 64/68 (94%) Strand = Plus / Plus Query: 54 cagactctaggaatagaccatgccatggcgtccttcatttggctttgtgggcctattact 113 ||||| ||||||||||||||||||||||| || ||||||||||||||||| ||||||||| Sbjct: 84692 cagaccctaggaatagaccatgccatggcatcattcatttggctttgtggacctattact 84751 Query: 114 ggttttgt 121 |||||||| Sbjct: 84752 ggttttgt 84759 Score = 79.8 bits (40), Expect = 2e-12 Identities = 52/56 (92%) Strand = Plus / Plus Query: 1 ccggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccag 56 ||||||||||||||||||||||||| |||||||| |||||||| || ||||||||| Sbjct: 84185 ccggcgtgcagttcggctgggcgcttcagctctcgctcctcacgccctacatccag 84240
>gb|BT009109.1| Triticum aestivum clone wl1.pk0003.h12:fis, full insert mRNA sequence Length = 1084 Score = 89.7 bits (45), Expect = 2e-15 Identities = 54/57 (94%) Strand = Plus / Plus Query: 1 ccggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccaga 57 ||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| Sbjct: 51 ccggcgtgcagtttggctgggtgatgcagctctccctcctcaccccatacatccaga 107
>gb|AY106212.1| Zea mays PCO103031 mRNA sequence Length = 2088 Score = 79.8 bits (40), Expect = 2e-12 Identities = 55/60 (91%) Strand = Plus / Plus Query: 2 cggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccagactct 61 ||||||||||| |||||||||||||||||||||||||||||| || ||| | |||||||| Sbjct: 327 cggcgtgcagtacggctgggcgctgcagctctccctcctcacgccctacgtgcagactct 386
>dbj|AB008464.1| Zea mays mRNA for Sucrose Transporter, complete cds Length = 1834 Score = 79.8 bits (40), Expect = 2e-12 Identities = 55/60 (91%) Strand = Plus / Plus Query: 2 cggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccagactct 61 ||||||||||| |||||||||||||||||||||||||||||| || ||| | |||||||| Sbjct: 302 cggcgtgcagtacggctgggcgctgcagctctccctcctcacgccctacgtgcagactct 361
>gb|AF419298.1| Oryza sativa (indica cultivar-group) sucrose transporter gene, complete cds Length = 7518 Score = 75.8 bits (38), Expect = 3e-11 Identities = 47/50 (94%) Strand = Plus / Plus Query: 3 ggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacat 52 |||||||||| ||||||||||||||||||||| ||||||||||| ||||| Sbjct: 1022 ggcgtgcagtacggctgggcgctgcagctctctctcctcaccccgtacat 1071
>dbj|AK100027.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146J01, full insert sequence Length = 2062 Score = 73.8 bits (37), Expect = 1e-10 Identities = 52/57 (91%) Strand = Plus / Plus Query: 2 cggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccagac 58 ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||||||| Sbjct: 383 cggcgtgcagtacgggtgggcgctccagctctccctcctcaccccctacgtccagac 439
>dbj|D87819.1| Oryza sativa (japonica cultivar-group) mRNA for sucrose transporter, complete cds Length = 2036 Score = 73.8 bits (37), Expect = 1e-10 Identities = 52/57 (91%) Strand = Plus / Plus Query: 2 cggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccagac 58 ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||||||| Sbjct: 246 cggcgtgcagtacgggtgggcgctccagctctccctcctcaccccctacgtccagac 302
>gb|AY780256.1| Saccharum hybrid cultivar sucrose transporter (SUT1) mRNA, complete cds Length = 1554 Score = 71.9 bits (36), Expect = 5e-10 Identities = 54/60 (90%) Strand = Plus / Plus Query: 2 cggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccagactct 61 ||||||||||| ||||||||||||||||||||||||||| || || ||| | |||||||| Sbjct: 123 cggcgtgcagtacggctgggcgctgcagctctccctcctgacgccctacgtgcagactct 182
>gb|AC146340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAa0044A10, from chromosome 10, complete sequence Length = 173374 Score = 71.9 bits (36), Expect = 5e-10 Identities = 42/44 (95%) Strand = Plus / Plus Query: 3 ggcgtgcagttcggctgggcgctgcagctctccctcctcacccc 46 |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 109928 ggcgtgcagtacggctgggcgctgcagctctctctcctcacccc 109971
>gb|BT009324.1| Triticum aestivum clone wlm24.pk0015.g11:fis, full insert mRNA sequence Length = 2160 Score = 71.9 bits (36), Expect = 5e-10 Identities = 54/60 (90%) Strand = Plus / Plus Query: 2 cggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccagactct 61 ||||||||||| ||| |||||||| ||||||||||| |||||||| ||| |||||||||| Sbjct: 337 cggcgtgcagtacggatgggcgctccagctctccctgctcaccccctacgtccagactct 396
>gb|BT009233.1| Triticum aestivum clone wle1n.pk0103.c11:fis, full insert mRNA sequence Length = 2083 Score = 71.9 bits (36), Expect = 5e-10 Identities = 54/60 (90%) Strand = Plus / Plus Query: 2 cggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccagactct 61 ||||||||||| ||| |||||||| ||||||||||| |||||||| ||| |||||||||| Sbjct: 356 cggcgtgcagtacggatgggcgctccagctctccctgctcaccccctacgtccagactct 415
>gb|AF408844.1| Triticum aestivum sucrose transporter SUT1D mRNA, complete cds Length = 2106 Score = 71.9 bits (36), Expect = 5e-10 Identities = 54/60 (90%) Strand = Plus / Plus Query: 2 cggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccagactct 61 ||||||||||| ||| |||||||| ||||||||||| |||||||| ||| |||||||||| Sbjct: 370 cggcgtgcagtacggatgggcgctccagctctccctgctcaccccctacgtccagactct 429
>gb|AF408843.1| Triticum aestivum sucrose transporter SUT1B mRNA, complete cds Length = 2021 Score = 71.9 bits (36), Expect = 5e-10 Identities = 54/60 (90%) Strand = Plus / Plus Query: 2 cggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccagactct 61 ||||||||||| ||| |||||||| ||||||||||| |||||||| ||| |||||||||| Sbjct: 261 cggcgtgcagtacggatgggcgctccagctctccctgctcaccccctacgtccagactct 320
>gb|AF408842.1| Triticum aestivum sucrose transporter SUT1A mRNA, complete cds Length = 2134 Score = 71.9 bits (36), Expect = 5e-10 Identities = 54/60 (90%) Strand = Plus / Plus Query: 2 cggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccagactct 61 ||||||||||| ||| |||||||| ||||||||||| |||||||| ||| |||||||||| Sbjct: 359 cggcgtgcagtacggatgggcgctccagctctccctgctcaccccctacgtccagactct 418
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 71.9 bits (36), Expect = 5e-10 Identities = 42/44 (95%) Strand = Plus / Plus Query: 3 ggcgtgcagttcggctgggcgctgcagctctccctcctcacccc 46 |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 13263679 ggcgtgcagtacggctgggcgctgcagctctctctcctcacccc 13263722
>emb|AJ272309.1|HVU272309 Hordeum vulgare mRNA for sucrose transporter 1 (sut1 gene) Length = 2044 Score = 71.9 bits (36), Expect = 5e-10 Identities = 54/60 (90%) Strand = Plus / Plus Query: 2 cggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccagactct 61 ||||||||||| ||| |||||||| ||||||||||| |||||||| ||| |||||||||| Sbjct: 271 cggcgtgcagtacggatgggcgctccagctctccctgctcaccccctacgtccagactct 330
>dbj|AK071452.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091J01, full insert sequence Length = 1959 Score = 71.9 bits (36), Expect = 5e-10 Identities = 42/44 (95%) Strand = Plus / Plus Query: 3 ggcgtgcagttcggctgggcgctgcagctctccctcctcacccc 46 |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 140 ggcgtgcagtacggctgggcgctgcagctctctctcctcacccc 183
>dbj|AB071809.1| Oryza sativa (japonica cultivar-group) OsSUT3 mRNA for sucrose transporter, complete cds Length = 1713 Score = 71.9 bits (36), Expect = 5e-10 Identities = 42/44 (95%) Strand = Plus / Plus Query: 3 ggcgtgcagttcggctgggcgctgcagctctccctcctcacccc 46 |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 187 ggcgtgcagtacggctgggcgctgcagctctctctcctcacccc 230
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 71.9 bits (36), Expect = 5e-10 Identities = 42/44 (95%) Strand = Plus / Plus Query: 3 ggcgtgcagttcggctgggcgctgcagctctccctcctcacccc 46 |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 13271019 ggcgtgcagtacggctgggcgctgcagctctctctcctcacccc 13271062
>emb|AM055812.1| Hordeum vulgare subsp. vulgare mRNA for sucrose transporter 1 (sut1 gene) Length = 2044 Score = 71.9 bits (36), Expect = 5e-10 Identities = 54/60 (90%) Strand = Plus / Plus Query: 2 cggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccagactct 61 ||||||||||| ||| |||||||| ||||||||||| |||||||| ||| |||||||||| Sbjct: 271 cggcgtgcagtacggatgggcgctccagctctccctgctcaccccctacgtccagactct 330
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 69.9 bits (35), Expect = 2e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 2 cggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccag 56 ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||||| Sbjct: 3785428 cggcgtgcagtacgggtgggcgctccagctctccctcctcaccccctacgtccag 3785374
>gb|DQ072592.1| Oryza sativa (indica cultivar-group) SUT2M (SUT2M) mRNA, complete cds Length = 1531 Score = 69.9 bits (35), Expect = 2e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 2 cggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccag 56 ||||||||||||||| |||||||||||||||||||| || ||||| ||| ||||| Sbjct: 126 cggcgtgcagttcgggtgggcgctgcagctctccctgctgaccccctacgtccag 180
>gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0091P11, complete sequence Length = 132151 Score = 69.9 bits (35), Expect = 2e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 2 cggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccag 56 ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||||| Sbjct: 64052 cggcgtgcagtacgggtgggcgctccagctctccctcctcaccccctacgtccag 63998
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 69.9 bits (35), Expect = 2e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 2 cggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccag 56 ||||||||||||||| |||||||||||||||||||| || ||||| ||| ||||| Sbjct: 27554063 cggcgtgcagttcgggtgggcgctgcagctctccctgctgaccccctacgtccag 27554009
>gb|AF280050.1| Oryza sativa (indica cultivar-group) sucrose transporter (SUT1) gene, complete cds Length = 7717 Score = 69.9 bits (35), Expect = 2e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 2 cggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccag 56 ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||||| Sbjct: 1663 cggcgtgcagtacgggtgggcgctccagctctccctcctcaccccctacgtccag 1717
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 69.9 bits (35), Expect = 2e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 2 cggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccag 56 ||||||||||| ||| |||||||| |||||||||||||||||||| ||| ||||| Sbjct: 3785539 cggcgtgcagtacgggtgggcgctccagctctccctcctcaccccctacgtccag 3785485
>dbj|AK109461.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-C09, full insert sequence Length = 3605 Score = 69.9 bits (35), Expect = 2e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 2 cggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccag 56 ||||||||||||||| |||||||||||||||||||| || ||||| ||| ||||| Sbjct: 180 cggcgtgcagttcgggtgggcgctgcagctctccctgctgaccccctacgtccag 234
>dbj|AK067030.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093C04, full insert sequence Length = 1987 Score = 69.9 bits (35), Expect = 2e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 2 cggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccag 56 ||||||||||||||| |||||||||||||||||||| || ||||| ||| ||||| Sbjct: 161 cggcgtgcagttcgggtgggcgctgcagctctccctgctgaccccctacgtccag 215
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 69.9 bits (35), Expect = 2e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 2 cggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccag 56 ||||||||||||||| |||||||||||||||||||| || ||||| ||| ||||| Sbjct: 27479621 cggcgtgcagttcgggtgggcgctgcagctctccctgctgaccccctacgtccag 27479567
>emb|BX664710.2|CNS09SC0 Oryza sativa chromosome 12, . PAC P0243A04 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 78611 Score = 69.9 bits (35), Expect = 2e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 2 cggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccag 56 ||||||||||||||| |||||||||||||||||||| || ||||| ||| ||||| Sbjct: 12931 cggcgtgcagttcgggtgggcgctgcagctctccctgctgaccccctacgtccag 12985
>gb|AF408845.1| Triticum aestivum sucrose transporter SUT1D gene, complete cds Length = 6582 Score = 61.9 bits (31), Expect = 5e-07 Identities = 49/55 (89%) Strand = Plus / Plus Query: 2 cggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccag 56 ||||||||||| ||| |||||||| ||||||||||| |||||||| ||| ||||| Sbjct: 1385 cggcgtgcagtacggatgggcgctccagctctccctgctcaccccctacgtccag 1439
>dbj|AB091672.1| Oryza sativa (japonica cultivar-group) OsSUT2 mRNA for sucrose transporter, complete cds Length = 1869 Score = 61.9 bits (31), Expect = 5e-07 Identities = 49/55 (89%) Strand = Plus / Plus Query: 2 cggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccag 56 ||||||||||||||| ||||||| |||||||||||| || ||||| ||| ||||| Sbjct: 180 cggcgtgcagttcgggtgggcgccgcagctctccctgctgaccccctacgtccag 234
>gb|AY098894.1| Citrus sinensis sucrose transporter 2 mRNA, complete cds Length = 2386 Score = 58.0 bits (29), Expect = 8e-06 Identities = 61/72 (84%) Strand = Plus / Plus Query: 87 ttcatttggctttgtgggcctattactggttttgtcgttcaaccttgngttggagtctgg 146 ||||||||||| ||||| |||||||| || |||| ||||||||||| ||||| ||||| Sbjct: 517 ttcatttggctctgtggccctattacaggccttgtggttcaaccttgtgttggtatctgg 576 Query: 147 agcgacaaatgc 158 || || |||||| Sbjct: 577 agtgataaatgc 588
>gb|AY504969.1| Juglans regia sucrose transporter mRNA, complete cds Length = 1886 Score = 56.0 bits (28), Expect = 3e-05 Identities = 49/56 (87%) Strand = Plus / Plus Query: 1 ccggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccag 56 |||||||||||||||| ||||| ||||| |||||||| || ||||| ||| ||||| Sbjct: 167 ccggcgtgcagttcgggtgggctctgcaactctccctactgaccccgtacgtccag 222
>gb|DQ138373.1| Manihot esculenta sucrose transporter type 2 (SUT2) mRNA, complete cds Length = 2431 Score = 54.0 bits (27), Expect = 1e-04 Identities = 44/50 (88%) Strand = Plus / Plus Query: 90 atttggctttgtgggcctattactggttttgtcgttcaaccttgngttgg 139 |||||||||||||| ||||| || ||| |||| ||||||||||| ||||| Sbjct: 527 atttggctttgtggccctataacaggtcttgtggttcaaccttgtgttgg 576
>emb|AJ272308.1|HVU272308 Hordeum vulgare mRNA for sucrose transporter 2 (sut2 gene) Length = 2018 Score = 54.0 bits (27), Expect = 1e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 6 gtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccag 56 ||||||||||| |||||||||||||| ||||| || ||||| ||| ||||| Sbjct: 248 gtgcagttcgggtgggcgctgcagctgtccctgctgaccccgtacgtccag 298
>dbj|AP007300.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT29K22, TM0275, complete sequence Length = 104570 Score = 54.0 bits (27), Expect = 1e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 9 cagttcggctgggcgctgcagctctccctcctcac 43 |||||||||||||| || ||||||||||||||||| Sbjct: 29606 cagttcggctgggccctacagctctccctcctcac 29640
>gb|AY639018.1| Zea mays sucrose transport protein (SUT2) mRNA, complete cds Length = 1649 Score = 52.0 bits (26), Expect = 5e-04 Identities = 26/26 (100%) Strand = Plus / Plus Query: 6 gtgcagttcggctgggcgctgcagct 31 |||||||||||||||||||||||||| Sbjct: 213 gtgcagttcggctgggcgctgcagct 238
>gb|AY603492.1| Zea mays sucrose transporter SUT4 mRNA, complete cds Length = 1839 Score = 52.0 bits (26), Expect = 5e-04 Identities = 26/26 (100%) Strand = Plus / Plus Query: 6 gtgcagttcggctgggcgctgcagct 31 |||||||||||||||||||||||||| Sbjct: 133 gtgcagttcggctgggcgctgcagct 158
>dbj|AP004957.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT34H20, TM0134, complete sequence Length = 132605 Score = 52.0 bits (26), Expect = 5e-04 Identities = 35/38 (92%) Strand = Plus / Plus Query: 9 cagttcggctgggcgctgcagctctccctcctcacccc 46 |||||||| ||||| |||||||||||||| |||||||| Sbjct: 26432 cagttcggttgggccctgcagctctccctgctcacccc 26469 Score = 38.2 bits (19), Expect = 7.6 Identities = 31/35 (88%) Strand = Plus / Plus Query: 12 ttcggctgggcgctgcagctctccctcctcacccc 46 ||||||||||| || ||||||||||| || ||||| Sbjct: 117458 ttcggctgggccctacagctctccctgctgacccc 117492
>ref|XM_466396.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2036 Score = 50.1 bits (25), Expect = 0.002 Identities = 31/33 (93%) Strand = Plus / Plus Query: 9 cagttcggctgggcgctgcagctctccctcctc 41 |||| |||||||||||||||||| ||||||||| Sbjct: 295 cagtacggctgggcgctgcagctgtccctcctc 327
>gb|DQ072593.1| Oryza sativa (japonica cultivar-group) SUT5Z (SUT5Z) mRNA, complete cds Length = 1635 Score = 50.1 bits (25), Expect = 0.002 Identities = 31/33 (93%) Strand = Plus / Plus Query: 9 cagttcggctgggcgctgcagctctccctcctc 41 |||| |||||||||||||||||| ||||||||| Sbjct: 203 cagtacggctgggcgctgcagctgtccctcctc 235
>dbj|AP006070.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1342F01 Length = 153287 Score = 50.1 bits (25), Expect = 0.002 Identities = 31/33 (93%) Strand = Plus / Minus Query: 9 cagttcggctgggcgctgcagctctccctcctc 41 |||| |||||||||||||||||| ||||||||| Sbjct: 65091 cagtacggctgggcgctgcagctgtccctcctc 65059
>dbj|AK073105.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024A07, full insert sequence Length = 2036 Score = 50.1 bits (25), Expect = 0.002 Identities = 31/33 (93%) Strand = Plus / Plus Query: 9 cagttcggctgggcgctgcagctctccctcctc 41 |||| |||||||||||||||||| ||||||||| Sbjct: 295 cagtacggctgggcgctgcagctgtccctcctc 327
>dbj|AB091674.1| Oryza sativa (japonica cultivar-group) OsSUT5 mRNA for sucrose transporter, complete cds Length = 1972 Score = 50.1 bits (25), Expect = 0.002 Identities = 31/33 (93%) Strand = Plus / Plus Query: 9 cagttcggctgggcgctgcagctctccctcctc 41 |||| |||||||||||||||||| ||||||||| Sbjct: 204 cagtacggctgggcgctgcagctgtccctcctc 236
>gb|AY065839.1| Brassica oleracea sucrose transporter SUC1 (SUC1) mRNA, complete cds Length = 1906 Score = 48.1 bits (24), Expect = 0.008 Identities = 48/56 (85%) Strand = Plus / Plus Query: 1 ccggcgtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccag 56 |||| ||||||||||| ||||| || |||||||| |||||||| || ||| ||||| Sbjct: 270 ccggtgtgcagttcgggtgggccctacagctctctctcctcacaccttacgtccag 325
>gb|AY946204.1| Eucommia ulmoides sucrose transporter 2 mRNA, complete cds Length = 1963 Score = 48.1 bits (24), Expect = 0.008 Identities = 41/47 (87%) Strand = Plus / Plus Query: 93 tggctttgtgggcctattactggttttgtcgttcaaccttgngttgg 139 ||||||||||| ||||| ||||| |||| ||||||||||| ||||| Sbjct: 313 tggctttgtggtcctatcactggccttgtggttcaaccttgtgttgg 359
>emb|AL929441.37| Mouse DNA sequence from clone RP23-418E20 on chromosome 4, complete sequence Length = 202920 Score = 46.1 bits (23), Expect = 0.031 Identities = 23/23 (100%) Strand = Plus / Plus Query: 24 ctgcagctctccctcctcacccc 46 ||||||||||||||||||||||| Sbjct: 149741 ctgcagctctccctcctcacccc 149763
>dbj|AB036758.1| Daucus carota cSUT mRNA for sucrose transporter protein, complete cds Length = 1796 Score = 46.1 bits (23), Expect = 0.031 Identities = 41/47 (87%) Strand = Plus / Plus Query: 9 cagttcggctgggcgctgcagctctccctcctcaccccatacatcca 55 |||||||| ||||| || ||||||||||| |||||||| ||| |||| Sbjct: 163 cagttcgggtgggccctccagctctccctgctcaccccttacgtcca 209
>emb|AL590416.4| Human DNA sequence from clone RP11-89C21 on chromosome 10p13-14 Contains the 3' end of the gene for a protein related to the N terminus of tre (RNTRE) (KIAA0019), gene FLJ34168, a novel gene and a CpG island, complete sequence Length = 171026 Score = 44.1 bits (22), Expect = 0.12 Identities = 22/22 (100%) Strand = Plus / Minus Query: 61 taggaatagaccatgccatggc 82 |||||||||||||||||||||| Sbjct: 55390 taggaatagaccatgccatggc 55369
>gb|AC026392.7| Homo sapiens chromosome 10 clone RP11-238C10, complete sequence Length = 177829 Score = 44.1 bits (22), Expect = 0.12 Identities = 22/22 (100%) Strand = Plus / Minus Query: 61 taggaatagaccatgccatggc 82 |||||||||||||||||||||| Sbjct: 138513 taggaatagaccatgccatggc 138492
>gb|DQ286433.1| Apium graveolens var. dulce putative sucrose transporter SUT3 mRNA, complete cds Length = 1768 Score = 44.1 bits (22), Expect = 0.12 Identities = 34/38 (89%) Strand = Plus / Plus Query: 9 cagttcggctgggcgctgcagctctccctcctcacccc 46 |||||||||||||| || ||||||||| | |||||||| Sbjct: 197 cagttcggctgggccctacagctctccttgctcacccc 234
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 42.1 bits (21), Expect = 0.49 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 cggcgtgcagttcggctgggc 22 ||||||||||||||||||||| Sbjct: 433517 cggcgtgcagttcggctgggc 433497
>gb|DQ020217.1| Bambusa oldhamii sucrose transporter BoSUT1 mRNA, complete cds Length = 1620 Score = 42.1 bits (21), Expect = 0.49 Identities = 27/29 (93%) Strand = Plus / Plus Query: 9 cagttcggctgggcgctgcagctctccct 37 |||| |||||||||||||||||| ||||| Sbjct: 163 cagtacggctgggcgctgcagctgtccct 191
>emb|AJ534442.1|PMA534442 Plantago major macronuclear mRNA for sucrose transporter (suc3 gene) Length = 1800 Score = 42.1 bits (21), Expect = 0.49 Identities = 45/53 (84%) Strand = Plus / Plus Query: 6 gtgcagttcggctgggcgctgcagctctccctcctcaccccatacatccagac 58 ||||| || ||||||||||| |||||||| || ||||| || ||||| ||||| Sbjct: 214 gtgcaatttggctgggcgcttcagctctcgctgctcactccgtacattcagac 266
>emb|AL022313.1|HS1119A7 Human DNA sequence from clone RP5-1119A7 on chromosome 22q12.2-12.3, complete sequence Length = 127145 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 cagctctccctcctcacccc 46 |||||||||||||||||||| Sbjct: 115651 cagctctccctcctcacccc 115632
>gb|AF191024.1|AF191024 Asarina barclaiana sucrose transporter 1 (SUT1) mRNA, complete cds Length = 1764 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 ttcatttggctttgtgggcc 106 |||||||||||||||||||| Sbjct: 226 ttcatttggctttgtgggcc 245
>gb|AF021809.1|AF021809 Vitis vinifera putative sucrose transporter (VvSUC12) mRNA, complete cds Length = 2130 Score = 40.1 bits (20), Expect = 1.9 Identities = 40/47 (85%) Strand = Plus / Plus Query: 93 tggctttgtgggcctattactggttttgtcgttcaaccttgngttgg 139 ||||||||||| |||||||| || |||| ||||| ||||| ||||| Sbjct: 344 tggctttgtggccctattacaggccttgtggttcagccttgtgttgg 390
>gb|AC147708.7| Canis Familiaris, clone XX-25G10, complete sequence Length = 185084 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 tccttcatttggctttgtg 102 ||||||||||||||||||| Sbjct: 76462 tccttcatttggctttgtg 76444
>ref|XM_743064.1| Aspergillus fumigatus Af293 eukaryotic translation initiation factor 3, gamma subunit (Afu5g01850) partial mRNA Length = 1719 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 cggcgtgcagttcggctgg 20 ||||||||||||||||||| Sbjct: 232 cggcgtgcagttcggctgg 214
>ref|XM_382276.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG02100.1) partial mRNA Length = 609 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 27 cagctctccctcctcaccc 45 ||||||||||||||||||| Sbjct: 558 cagctctccctcctcaccc 540
>emb|CR352265.10| Zebrafish DNA sequence from clone DKEY-33C18 in linkage group 24, complete sequence Length = 170032 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 85 ccttcatttggctttgtgg 103 ||||||||||||||||||| Sbjct: 142221 ccttcatttggctttgtgg 142203
>emb|CR717155.2|CNS0GGB0 Tetraodon nigroviridis full-length cDNA Length = 910 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 23 gctgcagctctccctcctc 41 ||||||||||||||||||| Sbjct: 23 gctgcagctctccctcctc 41
>gb|AC111111.11| Mus musculus chromosome 3, clone RP23-201A9, complete sequence Length = 233326 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 30 ctctccctcctcaccccat 48 ||||||||||||||||||| Sbjct: 148123 ctctccctcctcaccccat 148141
>gb|AC152499.17| Medicago truncatula clone mth2-56f20, complete sequence Length = 125561 Score = 38.2 bits (19), Expect = 7.6 Identities = 31/35 (88%) Strand = Plus / Minus Query: 18 tgggcgctgcagctctccctcctcaccccatacat 52 ||||| || ||||||||||| ||||| |||||||| Sbjct: 502 tgggccctacagctctcccttctcacaccatacat 468
>emb|AL606489.26| Human DNA sequence from clone RP11-739N20 on chromosome 1 Contains the 5' end of the gene for phosphoinositol 3-phosphate-binding protein-3 (PEPP3), two novel genes, the PPP1R15B gene for protein phosphatase 1, regulatory (inhibitor) subunit 15B, the PIK3C2B gene for phosphoinositide-3-kinase, class 2, beta polypeptide, a small nuclear ribonucleoprotein polypeptide F (SNRPF) pseudogene and three CpG islands, complete sequence Length = 167079 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 24 ctgcagctctccctcctcacccc 46 |||||||||||||||| |||||| Sbjct: 10693 ctgcagctctccctccccacccc 10715
>emb|AL035531.17|HS483L3 Human DNA sequence from clone RP3-483L3 on chromosome 6p25.1-25.3, complete sequence Length = 74513 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 gctctccctcctcacccca 47 ||||||||||||||||||| Sbjct: 23318 gctctccctcctcacccca 23336
>gb|AC091211.3| Drosophila melanogaster 3L BAC RP98-26E12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 194589 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 87 ttcatttggctttgtgggc 105 ||||||||||||||||||| Sbjct: 109181 ttcatttggctttgtgggc 109163
>gb|AC091228.3| Drosophila melanogaster 3L BAC RP98-10L9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 156142 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 87 ttcatttggctttgtgggc 105 ||||||||||||||||||| Sbjct: 135204 ttcatttggctttgtgggc 135222
>dbj|AB208225.1| Oryctolagus cuniculus DNA, INT298 locus sequence Length = 560 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 cctcctcaccccatacatc 53 ||||||||||||||||||| Sbjct: 280 cctcctcaccccatacatc 298
>gb|AF057709.1|AF057709 Homo sapiens clone ICRFP700B2221Q06 lymphoma pro-protein convertase (LPC) duplicate gene, duplicated exons 13-17, and platelet activating factor acetylhydrolase, alpha2 subunit (PAF-AH1A2) gene, exon 1 Length = 9820 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 14 cggctgggcgctgcagctc 32 ||||||||||||||||||| Sbjct: 9239 cggctgggcgctgcagctc 9257
>ref|XM_573400.1| PREDICTED: Rattus norvegicus similar to ATP-dependent RNA-helicase (LOC360815), mRNA Length = 4120 Score = 38.2 bits (19), Expect = 7.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 20 ggcgctgcagctctccctcctca 42 ||||||| ||||||||||||||| Sbjct: 1918 ggcgctggagctctccctcctca 1896
>gb|AF182445.1|AF182445 Vitis vinifera sucrose transporter mRNA, complete cds Length = 1654 Score = 38.2 bits (19), Expect = 7.6 Identities = 31/35 (88%) Strand = Plus / Plus Query: 9 cagttcggctgggcgctgcagctctccctcctcac 43 ||||| || ||||| |||||||||||||| ||||| Sbjct: 121 cagtttggttgggctctgcagctctcccttctcac 155
>gb|AC155910.6| Mus musculus 10 BAC RP24-492P8 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 156641 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 24 ctgcagctctccctcctca 42 ||||||||||||||||||| Sbjct: 146756 ctgcagctctccctcctca 146738
>gb|AC153367.5| Mus musculus 10 BAC RP23-182A11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 204838 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 24 ctgcagctctccctcctca 42 ||||||||||||||||||| Sbjct: 145638 ctgcagctctccctcctca 145656
>gb|AF021808.1|AF021808 Vitis vinifera putative sucrose transporter (VvSUC11) mRNA, complete cds Length = 1661 Score = 38.2 bits (19), Expect = 7.6 Identities = 31/35 (88%) Strand = Plus / Plus Query: 9 cagttcggctgggcgctgcagctctccctcctcac 43 ||||| || ||||| |||||||||||||| ||||| Sbjct: 151 cagtttggttgggctctgcagctctcccttctcac 185
>gb|AE003561.3| Drosophila melanogaster chromosome 3L, section 24 of 83 of the complete sequence Length = 274289 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 87 ttcatttggctttgtgggc 105 ||||||||||||||||||| Sbjct: 36769 ttcatttggctttgtgggc 36751
>dbj|AP001729.1| Homo sapiens genomic DNA, chromosome 21q, section 73/105 Length = 340000 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 ctctccctcctcaccccat 48 ||||||||||||||||||| Sbjct: 280599 ctctccctcctcaccccat 280581
>gb|AC004352.1|AC004352 Drosophila melanogaster DNA sequence (P1 DS02898 (D255)), complete sequence Length = 78643 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 87 ttcatttggctttgtgggc 105 ||||||||||||||||||| Sbjct: 35781 ttcatttggctttgtgggc 35763
>gb|AC004251.1|AC004251 Drosophila melanogaster (P1 DS08305 (D253)) DNA sequence, complete sequence Length = 83846 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 87 ttcatttggctttgtgggc 105 ||||||||||||||||||| Sbjct: 4645 ttcatttggctttgtgggc 4663
>gb|AC131673.4| Mus musculus BAC clone RP23-321P21 from 1, complete sequence Length = 262190 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 tccttcatttggctttgtg 102 ||||||||||||||||||| Sbjct: 150387 tccttcatttggctttgtg 150369
>dbj|AP005638.2| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-61B13, complete sequence Length = 83280 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 26 gcagctctccctcctcacc 44 ||||||||||||||||||| Sbjct: 74382 gcagctctccctcctcacc 74400
>emb|AL607109.21| Mouse DNA sequence from clone RP23-352D7 on chromosome 4, complete sequence Length = 187252 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 ccatgccatggcgtccttc 89 ||||||||||||||||||| Sbjct: 177820 ccatgccatggcgtccttc 177802
>dbj|AP000156.1| Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone D47-S479, segment 8/16, complete sequence Length = 100000 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 ctctccctcctcaccccat 48 ||||||||||||||||||| Sbjct: 89016 ctctccctcctcaccccat 88998
>dbj|AP000014.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrome region, segment 7/13 Length = 302521 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 ctctccctcctcaccccat 48 ||||||||||||||||||| Sbjct: 125933 ctctccctcctcaccccat 125915
>dbj|AP001430.1| Homo sapiens genomic DNA, chromosome 21q22.2, clone:T1435, LB7T-ERG region, complete sequence Length = 40307 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 ctctccctcctcaccccat 48 ||||||||||||||||||| Sbjct: 23781 ctctccctcctcaccccat 23763
>dbj|AP004606.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-138O22, complete sequences Length = 173185 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 26 gcagctctccctcctcacc 44 ||||||||||||||||||| Sbjct: 27410 gcagctctccctcctcacc 27428
>dbj|AP005018.1| Homo sapiens genomic DNA, chromosome 11q clone:RP11-109L13, complete sequences Length = 67000 Score = 38.2 bits (19), Expect = 7.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 14 cggctgggcgctgcagctc 32 ||||||||||||||||||| Sbjct: 8072 cggctgggcgctgcagctc 8090 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,097,202 Number of Sequences: 3902068 Number of extensions: 1097202 Number of successful extensions: 80338 Number of sequences better than 10.0: 93 Number of HSP's better than 10.0 without gapping: 94 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80047 Number of HSP's gapped (non-prelim): 291 length of query: 158 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 136 effective length of database: 17,147,199,772 effective search space: 2332019168992 effective search space used: 2332019168992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
