ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal23p08 |
|---|---|
| Clone Library Name | barley_pub |
>OLIG3_MOUSE (Q6PFG8) Oligodendrocyte transcription factor 3 (Oligo3)| (Oligodendrocyte-specific bHLH transcription factor 3) (Basic helix-loop-helix domain-containing class B protein 7) Length = 273 Score = 33.1 bits (74), Expect = 0.70 Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 12/99 (12%) Frame = +1 Query: 127 VLLSTQEMRQLKTLACSSTGNH------STLGHSASHPAAVPSPVFPL------ALASGL 270 +L+ T + ++K L G H T+GHSA HPA + V P+ AL+SG Sbjct: 135 ILMLTSSLEEMKRLVGEIYGGHHSAFHCGTVGHSAGHPAHAANAVHPVHPILGGALSSG- 193 Query: 271 QQLSPPVLKICMLQRWECHRGSPMIKVTQPTHQPTNQPS 387 S P+ + P I +P H PS Sbjct: 194 -NASSPLSATSL----------PTIGTIRPPHSLLKAPS 221
>OLIG3_HUMAN (Q7RTU3) Oligodendrocyte transcription factor 3 (Oligo3) (Basic| helix-loop-helix domain-containing class B protein 7) Length = 272 Score = 33.1 bits (74), Expect = 0.70 Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 12/99 (12%) Frame = +1 Query: 127 VLLSTQEMRQLKTLACSSTGNH------STLGHSASHPAAVPSPVFPL------ALASGL 270 +L+ T + ++K L G H T+GHSA HPA + V P+ AL+SG Sbjct: 134 ILMLTSSLEEMKRLVGEIYGGHHSAFHCGTVGHSAGHPAHAANSVHPVHPILGGALSSG- 192 Query: 271 QQLSPPVLKICMLQRWECHRGSPMIKVTQPTHQPTNQPS 387 S P+ + P I +P H PS Sbjct: 193 -NASSPLSAASL----------PAIGTIRPPHSLLKAPS 220
>TREX1_HUMAN (Q9NSU2) Three prime repair exonuclease 1 (EC 3.1.11.2) (3'-5'| exonuclease TREX1) (DNase III) Length = 369 Score = 31.6 bits (70), Expect = 2.0 Identities = 19/66 (28%), Positives = 29/66 (43%) Frame = +1 Query: 175 SSTGNHSTLGHSASHPAAVPSPVFPLALASGLQQLSPPVLKICMLQRWECHRGSPMIKVT 354 S+ G + T+G A P + + +F A+GL P V ++C+L C SP Sbjct: 48 SAAGTYPTMGSQALPPGPMQTLIFFDMEATGLPFSQPKVTELCLLAVHRCALESPPTSQG 107 Query: 355 QPTHQP 372 P P Sbjct: 108 PPPTVP 113
>GEI8_CAEEL (P34333) Gex-3-interacting protein 8| Length = 1780 Score = 31.6 bits (70), Expect = 2.0 Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 14/128 (10%) Frame = +3 Query: 249 TGLSIRPTAIVPTSLEDMYASEMGMSPRFTNDQGHSAYSPAHKSAILNKLHQQKGLLSPV 428 T S+ P IVP +++ G +P+FT Q H A++ + Q+ + V Sbjct: 788 TSTSVPPVTIVPPAIQQPVVVISGAAPQFTQQQ------TTHSPALIAQPIPQQLIPQRV 841 Query: 429 NT-NRMYSPRALDPAAL-------------VQSPIGGMSPRSPRLMEPTSPINARFGAAV 566 +T ++ +P + P A Q P+ LM+ IN +F A + Sbjct: 842 STPAQILTPTPVRPTAASTPSMDQFLGLFKQQQQQQQQQPQQSNLMQQLGNINPQFLALL 901 Query: 567 TQREMYEQ 590 Q++ +Q Sbjct: 902 LQQQQQQQ 909
>PHNC_ECOL6 (Q8FAV1) Phosphonates import ATP-binding protein phnC (EC 3.6.3.28)| Length = 262 Score = 30.8 bits (68), Expect = 3.5 Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 11/103 (10%) Frame = +3 Query: 291 LEDMYASEMGMSP-------RFTNDQGHSAYSPAHKSAILNKLHQQKGLLSPVNTNRMYS 449 LE++ +G +P FT +Q A + +++ HQ+ LS R+ Sbjct: 104 LENVLIGALGSTPFWRTCFSYFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAI 163 Query: 450 PRALDPAA---LVQSPIGGMSPRSPRL-MEPTSPINARFGAAV 566 RAL A L PI + P S R+ M+ IN G V Sbjct: 164 ARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITV 206
>NOTC3_HUMAN (Q9UM47) Neurogenic locus notch homolog protein 3 precursor (Notch 3)| [Contains: Notch 3 extracellular truncation; Notch 3 intracellular domain] Length = 2321 Score = 24.3 bits (51), Expect(3) = 3.9 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = +1 Query: 220 PAAVPSPVFPLALASGLQQLSP 285 P A P P F L LA G Q L+P Sbjct: 2177 PPAPPGPSFLLPLAPGPQLLNP 2198 Score = 21.6 bits (44), Expect(3) = 3.9 Identities = 10/23 (43%), Positives = 11/23 (47%) Frame = +3 Query: 33 SPRHFAPPPGSPSAMNNGGAASA 101 SPR F PP SP G +A Sbjct: 2107 SPRPFGGPPASPGGFPLEGPYAA 2129 Score = 21.2 bits (43), Expect(3) = 3.9 Identities = 6/19 (31%), Positives = 10/19 (52%) Frame = +2 Query: 182 LGITVPWGTLPPTQQPSPA 238 + + + W LPP P P+ Sbjct: 2166 VAVPLDWARLPPPAPPGPS 2184
>PHNC_SHIFL (Q83P97) Phosphonates import ATP-binding protein phnC (EC 3.6.3.28)| Length = 262 Score = 30.4 bits (67), Expect = 4.6 Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 11/103 (10%) Frame = +3 Query: 291 LEDMYASEMGMSPR-------FTNDQGHSAYSPAHKSAILNKLHQQKGLLSPVNTNRMYS 449 LE++ +G +P FT +Q A + +++ HQ+ LS R+ Sbjct: 104 LENVLIGALGSTPFWRTCFSWFTGEQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAI 163 Query: 450 PRALDPAA---LVQSPIGGMSPRSPRL-MEPTSPINARFGAAV 566 RAL A L PI + P S R+ M+ IN G V Sbjct: 164 ARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITV 206
>PHNC_ECOLI (P16677) Phosphonates import ATP-binding protein phnC (EC 3.6.3.28)| Length = 262 Score = 30.4 bits (67), Expect = 4.6 Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 11/103 (10%) Frame = +3 Query: 291 LEDMYASEMGMSPR-------FTNDQGHSAYSPAHKSAILNKLHQQKGLLSPVNTNRMYS 449 LE++ +G +P FT +Q A + +++ HQ+ LS R+ Sbjct: 104 LENVLIGALGSTPFWRTCFSWFTGEQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAI 163 Query: 450 PRALDPAA---LVQSPIGGMSPRSPRL-MEPTSPINARFGAAV 566 RAL A L PI + P S R+ M+ IN G V Sbjct: 164 ARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITV 206
>PAT1_YEAST (P25644) Topoisomerase II-associated protein PAT1| Length = 796 Score = 30.4 bits (67), Expect = 4.6 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = +3 Query: 465 PAALVQSPIGGMSPR-SPRLMEPTSPINARFGAAVTQREMYEQFSNLN 605 P A+ SP M+P +P+ M P PI + QR+M +QF N + Sbjct: 115 PPAMAPSPQSTMAPAPAPQQMAPLQPILSMQDLERQQRQMQQQFMNFH 162
>SEN54_HUMAN (Q7Z6J9) tRNA-splicing endonuclease subunit Sen54 (tRNA-intron| endonuclease Sen54) (HsSen54) Length = 526 Score = 30.4 bits (67), Expect = 4.6 Identities = 21/67 (31%), Positives = 28/67 (41%) Frame = -1 Query: 208 SAPRYCDSQSRSKPRSSTVASLALKEERSLLP*SQCAEAAPPLFMADGDPGGGAKCLGDP 29 S+PR + ++++ S SLA SQC E P PGG + LG Sbjct: 205 SSPRSINKKAKALDNSLQPKSLAASSPPPCSQPSQCPEEKPQESSPMKGPGGPFQLLGSL 264 Query: 28 GRSPSAA 8 G SP A Sbjct: 265 GPSPGPA 271
>YT41_CAEEL (Q11069) Hypothetical protein B0416.1 in chromosome X| Length = 1203 Score = 30.0 bits (66), Expect = 6.0 Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 12/98 (12%) Frame = +3 Query: 282 PTSLEDMYASEMGMSPRFTNDQGHSAYSPAHKSAILNKL-------HQQKGLLSPVNTNR 440 P S +D P + N HS+Y+ A S I+N++ +KG L P Sbjct: 1071 PPSTDDSLGDPALHEPLWANLNPHSSYTSAMMSPIMNEVMSNDETTDDEKGRLIPDRPPI 1130 Query: 441 MYSPRAL-----DPAALVQSPIGGMSPRSPRLMEPTSP 539 +SPR L + +S +PR PR SP Sbjct: 1131 PHSPRELKRLKREKDQQSESGSKPSTPRPPRFRISMSP 1168
>ENL2_ARATH (Q9T076) Early nodulin-like protein 2 precursor (Phytocyanin-like| protein) Length = 349 Score = 29.6 bits (65), Expect = 7.8 Identities = 22/89 (24%), Positives = 38/89 (42%) Frame = +3 Query: 270 TAIVPTSLEDMYASEMGMSPRFTNDQGHSAYSPAHKSAILNKLHQQKGLLSPVNTNRMYS 449 +A +P++ + +A+ G S + A+SP S + P + S Sbjct: 130 SARIPSTAQSPHAAAPGSSTPGSMTPPGGAHSPKSSSPVSPTTSPPGSTTPPGGAHSPKS 189 Query: 450 PRALDPAALVQSPIGGMSPRSPRLMEPTS 536 A+ PA SP G M+P+S + PT+ Sbjct: 190 SSAVSPAT---SPPGSMAPKSGSPVSPTT 215 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,030,644 Number of Sequences: 219361 Number of extensions: 2289758 Number of successful extensions: 8401 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 7611 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8386 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5881538857 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
