>Y615_SYNY3 (P52876) Hypothetical UPF0016 protein sll0615|
          Length = 206

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 43/90 (47%), Positives = 59/90 (65%)
 Frame = +3

Query: 333 SGFTAAFTLIFVSEIGDKTFFIAALLAMQYQKALVLLGSMAALSLMTIVSVVIGRIFQSV 512
           + FTA   LI VSE+GDKTFFIA +LAM+Y +  VL+G +  L+ MTI+SV++G+IF  +
Sbjct: 3   TAFTAGLLLITVSELGDKTFFIAMILAMRYPRRWVLVGVVGGLAAMTILSVLMGQIFTFL 62

Query: 513 PAQFQTTLPIGEYAAVALLAFFGFKSIKDA 602
           P ++        YA VAL   FG K + DA
Sbjct: 63  PTRYI------NYAEVALFLIFGTKLLWDA 86

>PF27_MOUSE (P52875) Transmembrane protein PFT27 (TPA-regulated locus protein)|
          Length = 323

 Score = 73.6 bits (179), Expect = 4e-13
 Identities = 38/87 (43%), Positives = 56/87 (64%)
 Frame = +3

Query: 339 FTAAFTLIFVSEIGDKTFFIAALLAMQYQKALVLLGSMAALSLMTIVSVVIGRIFQSVPA 518
           F AA ++I VSE+GDKTFFIAA++AM+Y +  VL G+M AL+LMT +SV+ G     +P 
Sbjct: 97  FVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFGYATTVIPR 156

Query: 519 QFQTTLPIGEYAAVALLAFFGFKSIKD 599
            +        Y + AL A FG + +++
Sbjct: 157 VYT------YYVSTALFAIFGIRMLRE 177



 Score = 30.4 bits (67), Expect = 4.2
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = +3

Query: 339 FTAAFTLIFVSEIGDKTFFIAALLAMQYQKALVLLGSMAALSLMTIVSVVIGR-IFQSVP 515
           F  A TL F++E GD++     +LA +     V +G      L T ++V+ GR I Q + 
Sbjct: 236 FVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKIS 295

Query: 516 AQFQTTLPIGEYAAVALLAFF 578
            +  T +    + A A  A F
Sbjct: 296 VRTVTIIGGIVFLAFAFSALF 316

>YB37_YEAST (P38301) Hypothetical UPF0016 protein YBR187w|
          Length = 280

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 31/83 (37%), Positives = 51/83 (61%)
 Frame = +3

Query: 339 FTAAFTLIFVSEIGDKTFFIAALLAMQYQKALVLLGSMAALSLMTIVSVVIGRIFQSVPA 518
           F  + ++I +SEIGDKTF IAAL+AM++++ LV   +  +L++MTI+S V+G    +  +
Sbjct: 42  FLMSVSMIGLSEIGDKTFLIAALMAMRHKRVLVFSAAATSLAIMTILSGVVGHSAVAFLS 101

Query: 519 QFQTTLPIGEYAAVALLAFFGFK 587
           +  T      + A  L   FG+K
Sbjct: 102 ERYTA-----FFAGILFLVFGYK 119

>YD68_SCHPO (Q10320) Hypothetical UPF0016 protein C17G8.08c in chromosome I|
          Length = 287

 Score = 52.8 bits (125), Expect = 8e-07
 Identities = 31/85 (36%), Positives = 47/85 (55%)
 Frame = +3

Query: 348 AFTLIFVSEIGDKTFFIAALLAMQYQKALVLLGSMAALSLMTIVSVVIGRIFQSVPAQFQ 527
           + ++IF  EIGDKTF +AALLA +  +  V  GS +AL +MT++ V++G    + P  F 
Sbjct: 53  SISMIFGCEIGDKTFIVAALLAFENSRLTVFAGSYSALFIMTLLGVLLG---HAAPLLFP 109

Query: 528 TTLPIGEYAAVALLAFFGFKSIKDA 602
             L   +     L   FG K + +A
Sbjct: 110 RKLT--DILGGVLFVIFGIKMLMEA 132



 Score = 31.2 bits (69), Expect = 2.5
 Identities = 20/68 (29%), Positives = 32/68 (47%)
 Frame = +3

Query: 294 KGQPSAVVAALAKSGFTAAFTLIFVSEIGDKTFFIAALLAMQYQKALVLLGSMAALSLMT 473
           K +   V+A L    F  AF L FVSE GD++      +A       V +G+    +  T
Sbjct: 188 KSKGRNVMATLFSPLFIKAFALTFVSEWGDRSQIATIAMAASDNVYGVFMGANVGHACCT 247

Query: 474 IVSVVIGR 497
            ++V+ G+
Sbjct: 248 ALAVISGK 255

>LRP8_MOUSE (Q924X6) Low-density lipoprotein receptor-related protein 8|
           precursor (Apolipoprotein E receptor 2)
          Length = 996

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
 Frame = +2

Query: 446 VNGCSFPDDYRECRDWTD--LSVC--TSTISNNTAHRRICSSC-----ATCIFRFQI 589
           V+G    DD R+CRDW+D    VC     + NN     IC+        TC   FQ+
Sbjct: 345 VDGGKVCDDQRDCRDWSDEPQKVCGLNECLHNNGGCSHICTDLKIGFECTCPAGFQL 401

>YYAM_BACSU (P37511) Hypothetical transport protein yyaM|
          Length = 305

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 17/67 (25%), Positives = 35/67 (52%)
 Frame = +3

Query: 378 GDKTFFIAALLAMQYQKALVLLGSMAALSLMTIVSVVIGRIFQSVPAQFQTTLPIGEYAA 557
           G+  + +  +L  ++ K    L +     ++  VS+++  +F S P    + +PIG + A
Sbjct: 162 GNVCWALYGVLGRRFVKDGTPLSTTTYTMVIGAVSLIVVSLFTSKPVSL-SNIPIGVWGA 220

Query: 558 VALLAFF 578
           +A +AFF
Sbjct: 221 IAFMAFF 227

>VATI_ARCFU (O29106) V-type ATP synthase subunit I (EC 3.6.3.14) (V-type ATPase|
           subunit I)
          Length = 676

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 26/81 (32%), Positives = 42/81 (51%)
 Frame = +3

Query: 342 TAAFTLIFVSEIGDKTFFIAALLAMQYQKALVLLGSMAALSLMTIVSVVIGRIFQSVPAQ 521
           T  F +    EI D T FIA    + +    ++LG +    L+T++S+ + R+F++    
Sbjct: 326 TTTFGIPKYKEI-DPTVFIAIFFPIFFG---MMLGDIGYGLLVTVISLYLKRVFKT--EG 379

Query: 522 FQTTLPIGEYAAVALLAFFGF 584
           +Q  L IG YA V +   FGF
Sbjct: 380 WQRMLNIGVYAGV-MSIIFGF 399

>ATM_NEUCR (Q7RZT9) Serine/threonine-protein kinase tel-1 (EC 2.7.11.1)|
            (DNA-damage checkpoint kinase tel-1) (Telomere length
            regulation protein 1) (ATM homolog)
          Length = 2953

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 57   LLSW-LKPIRYDVRVQTSNIDLGAGSYEGDEAGGRREQLDSSGTKSSNEPAK 209
            L SW + P+R     +  N+ +GAG  +  EA   R   D   TK+ NEP++
Sbjct: 2845 LYSWSMSPLRM---ARLQNVRVGAGEDDVVEAEDERRAGDKKSTKNLNEPSE 2893

>VBR1_TMOV (Q06661) BR1 protein|
          Length = 257

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 317 YNCRWLSFKENDKSRCQGAQK*HGSNSLHVTRSRNWFCW 201
           YNC W +FK+ D+  C+G       N+L V     ++CW
Sbjct: 205 YNC-WSTFKDLDRESCKGVYDNISKNALLV-----YYCW 237

>FURIN_BOVIN (Q28193) Furin precursor (EC 3.4.21.75) (Paired basic amino acid|
           residue-cleaving enzyme) (PACE) (Dibasic-processing
           enzyme) (Trans Golgi network protease furin)
          Length = 797

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 502 FSLYQHNFKQHCP*ENMQQLRYLHFSVSNQLKM 600
           FSL+Q N  QHCP     Q+   H+S  N +++
Sbjct: 603 FSLHQKNCVQHCPPGFAPQVLDTHYSTENDVEI 635

>Y1845_ARCFU (O28433) Hypothetical protein AF1845 precursor|
          Length = 288

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +3

Query: 135 EGDEAGGRREQLDSSGTKSSNEPAKPVSGS 224
           E  EAGG  EQL +S   S  EP K   GS
Sbjct: 145 ESGEAGGAGEQLPASDQASGEEPVKRYPGS 174


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,334,286
Number of Sequences: 219361
Number of extensions: 1546021
Number of successful extensions: 4371
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4367
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)