| Clone Name | baal23o04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197204.1| Oryza sativa (japonica cultivar-group) putative PKCq-interacting protein (OSJNBa0078O01.9), mRNA Length = 1840 Score = 476 bits (240), Expect = e-131 Identities = 336/368 (91%) Strand = Plus / Plus Query: 16 gcgcgggccgccgcggtgcacttctgggcggcctggtgcgaggcctccaagcagatggac 75 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 188 gcgcgggccgccgcggtgcacttctgggcggcgtggtgcgaggcgtccaagcagatggac 247 Query: 76 gaggtcttcgcccacctcgccgtcgacttcccccacgcgctcttcctcagggttgaagct 135 ||||||||||| |||||||||||||||||| ||||||| |||||||| ||||||||||| Sbjct: 248 gaggtcttcgcgcacctcgccgtcgacttctcccacgccgtcttcctccgggttgaagct 307 Query: 136 gaagaacaaccggaaatttcagaggcatatggagttacagcagtgccatactttgttttc 195 || |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 308 gaggaacaacccgaaatttcagaggcatatggagttacagcagtgccatattttgttttc 367 Query: 196 tgcaaggaaggcaaacctgttgataccttggagggcgcaaacccagccagcctggccaat 255 | |||||||| ||| |||||||||| ||||||| ||||| ||||||||| |||||||| Sbjct: 368 ttgaaggaaggtaaaactgttgatactctggagggtgcaaatccagccagcttggccaat 427 Query: 256 aaggttgcaaagttagctgggcctgccaatgttgctcagtctgctgtacctgctagcttg 315 |||||||||||||||||||||||||||| |||||| |||||||||| ||||||||| || Sbjct: 428 aaggttgcaaagttagctgggcctgccagcgttgctgagtctgctgtgcctgctagcctg 487 Query: 316 ggggtggctgccgggcctgctgtactcgaaaaagtccaagaaatggcacggcaaaatgga 375 || |||||||| |||||||||||||| ||||| || ||||| ||||||| |||||||||| Sbjct: 488 ggtgtggctgctgggcctgctgtacttgaaaaggttcaagagatggcacagcaaaatgga 547 Query: 376 tcttctgc 383 ||||||| Sbjct: 548 gcttctgc 555 Score = 129 bits (65), Expect = 1e-26 Identities = 110/125 (88%) Strand = Plus / Plus Query: 409 ttggagcagcttgtcaattcccatcctgtcatcttatttatgaagggaaatccaggagaa 468 |||||||||||||||||||||||||| ||| |||||||||||||||||| || | || Sbjct: 590 ttggagcagcttgtcaattcccatcccgtcttcttatttatgaagggaacccctgagcaa 649 Query: 469 ccaaggtgtgggttcagccgaagggtggttgacattttgaagcaggaaggtgttgaattt 528 ||||||||||| ||||| |||| || |||||| |||||||||||||||| ||||||||| Sbjct: 650 ccaaggtgtggtttcagtcgaaaagtagttgacgttttgaagcaggaaggagttgaattt 709 Query: 529 gggag 533 ||||| Sbjct: 710 gggag 714
>dbj|AK105626.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C12, full insert sequence Length = 1441 Score = 476 bits (240), Expect = e-131 Identities = 336/368 (91%) Strand = Plus / Plus Query: 16 gcgcgggccgccgcggtgcacttctgggcggcctggtgcgaggcctccaagcagatggac 75 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 154 gcgcgggccgccgcggtgcacttctgggcggcgtggtgcgaggcgtccaagcagatggac 213 Query: 76 gaggtcttcgcccacctcgccgtcgacttcccccacgcgctcttcctcagggttgaagct 135 ||||||||||| |||||||||||||||||| ||||||| |||||||| ||||||||||| Sbjct: 214 gaggtcttcgcgcacctcgccgtcgacttctcccacgccgtcttcctccgggttgaagct 273 Query: 136 gaagaacaaccggaaatttcagaggcatatggagttacagcagtgccatactttgttttc 195 || |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 274 gaggaacaacccgaaatttcagaggcatatggagttacagcagtgccatattttgttttc 333 Query: 196 tgcaaggaaggcaaacctgttgataccttggagggcgcaaacccagccagcctggccaat 255 | |||||||| ||| |||||||||| ||||||| ||||| ||||||||| |||||||| Sbjct: 334 ttgaaggaaggtaaaactgttgatactctggagggtgcaaatccagccagcttggccaat 393 Query: 256 aaggttgcaaagttagctgggcctgccaatgttgctcagtctgctgtacctgctagcttg 315 |||||||||||||||||||||||||||| |||||| |||||||||| ||||||||| || Sbjct: 394 aaggttgcaaagttagctgggcctgccagcgttgctgagtctgctgtgcctgctagcctg 453 Query: 316 ggggtggctgccgggcctgctgtactcgaaaaagtccaagaaatggcacggcaaaatgga 375 || |||||||| |||||||||||||| ||||| || ||||| ||||||| |||||||||| Sbjct: 454 ggtgtggctgctgggcctgctgtacttgaaaaggttcaagagatggcacagcaaaatgga 513 Query: 376 tcttctgc 383 ||||||| Sbjct: 514 gcttctgc 521 Score = 129 bits (65), Expect = 1e-26 Identities = 110/125 (88%) Strand = Plus / Plus Query: 409 ttggagcagcttgtcaattcccatcctgtcatcttatttatgaagggaaatccaggagaa 468 |||||||||||||||||||||||||| ||| |||||||||||||||||| || | || Sbjct: 556 ttggagcagcttgtcaattcccatcccgtcttcttatttatgaagggaacccctgagcaa 615 Query: 469 ccaaggtgtgggttcagccgaagggtggttgacattttgaagcaggaaggtgttgaattt 528 ||||||||||| ||||| |||| || |||||| |||||||||||||||| ||||||||| Sbjct: 616 ccaaggtgtggtttcagtcgaaaagtagttgacgttttgaagcaggaaggagttgaattt 675 Query: 529 gggag 533 ||||| Sbjct: 676 gggag 680
>dbj|AK059628.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-H12, full insert sequence Length = 1815 Score = 476 bits (240), Expect = e-131 Identities = 336/368 (91%) Strand = Plus / Plus Query: 16 gcgcgggccgccgcggtgcacttctgggcggcctggtgcgaggcctccaagcagatggac 75 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 198 gcgcgggccgccgcggtgcacttctgggcggcgtggtgcgaggcgtccaagcagatggac 257 Query: 76 gaggtcttcgcccacctcgccgtcgacttcccccacgcgctcttcctcagggttgaagct 135 ||||||||||| |||||||||||||||||| ||||||| |||||||| ||||||||||| Sbjct: 258 gaggtcttcgcgcacctcgccgtcgacttctcccacgccgtcttcctccgggttgaagct 317 Query: 136 gaagaacaaccggaaatttcagaggcatatggagttacagcagtgccatactttgttttc 195 || |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 318 gaggaacaacccgaaatttcagaggcatatggagttacagcagtgccatattttgttttc 377 Query: 196 tgcaaggaaggcaaacctgttgataccttggagggcgcaaacccagccagcctggccaat 255 | |||||||| ||| |||||||||| ||||||| ||||| ||||||||| |||||||| Sbjct: 378 ttgaaggaaggtaaaactgttgatactctggagggtgcaaatccagccagcttggccaat 437 Query: 256 aaggttgcaaagttagctgggcctgccaatgttgctcagtctgctgtacctgctagcttg 315 |||||||||||||||||||||||||||| |||||| |||||||||| ||||||||| || Sbjct: 438 aaggttgcaaagttagctgggcctgccagcgttgctgagtctgctgtgcctgctagcctg 497 Query: 316 ggggtggctgccgggcctgctgtactcgaaaaagtccaagaaatggcacggcaaaatgga 375 || |||||||| |||||||||||||| ||||| || ||||| ||||||| |||||||||| Sbjct: 498 ggtgtggctgctgggcctgctgtacttgaaaaggttcaagagatggcacagcaaaatgga 557 Query: 376 tcttctgc 383 ||||||| Sbjct: 558 gcttctgc 565 Score = 129 bits (65), Expect = 1e-26 Identities = 110/125 (88%) Strand = Plus / Plus Query: 409 ttggagcagcttgtcaattcccatcctgtcatcttatttatgaagggaaatccaggagaa 468 |||||||||||||||||||||||||| ||| |||||||||||||||||| || | || Sbjct: 600 ttggagcagcttgtcaattcccatcccgtcttcttatttatgaagggaacccctgagcaa 659 Query: 469 ccaaggtgtgggttcagccgaagggtggttgacattttgaagcaggaaggtgttgaattt 528 ||||||||||| ||||| |||| || |||||| |||||||||||||||| ||||||||| Sbjct: 660 ccaaggtgtggtttcagtcgaaaagtagttgacgttttgaagcaggaaggagttgaattt 719 Query: 529 gggag 533 ||||| Sbjct: 720 gggag 724
>dbj|AK067982.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121J12, full insert sequence Length = 1949 Score = 468 bits (236), Expect = e-129 Identities = 335/368 (91%) Strand = Plus / Plus Query: 16 gcgcgggccgccgcggtgcacttctgggcggcctggtgcgaggcctccaagcagatggac 75 |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 198 gcgcgggctgccgcggtgcacttctgggcggcgtggtgcgaggcgtccaagcagatggac 257 Query: 76 gaggtcttcgcccacctcgccgtcgacttcccccacgcgctcttcctcagggttgaagct 135 ||||||||||| |||||||||||||||||| ||||||| |||||||| ||||||||||| Sbjct: 258 gaggtcttcgcgcacctcgccgtcgacttctcccacgccgtcttcctccgggttgaagct 317 Query: 136 gaagaacaaccggaaatttcagaggcatatggagttacagcagtgccatactttgttttc 195 || |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 318 gaggaacaacccgaaatttcagaggcatatggagttacagcagtgccatattttgttttc 377 Query: 196 tgcaaggaaggcaaacctgttgataccttggagggcgcaaacccagccagcctggccaat 255 | |||||||| ||| |||||||||| ||||||| ||||| ||||||||| |||||||| Sbjct: 378 ttgaaggaaggtaaaactgttgatactctggagggtgcaaatccagccagcttggccaat 437 Query: 256 aaggttgcaaagttagctgggcctgccaatgttgctcagtctgctgtacctgctagcttg 315 |||||||||||||||||||||||||||| |||||| |||||||||| ||||||||| || Sbjct: 438 aaggttgcaaagttagctgggcctgccagcgttgctgagtctgctgtgcctgctagcctg 497 Query: 316 ggggtggctgccgggcctgctgtactcgaaaaagtccaagaaatggcacggcaaaatgga 375 || |||||||| |||||||||||||| ||||| || ||||| ||||||| |||||||||| Sbjct: 498 ggtgtggctgctgggcctgctgtacttgaaaaggttcaagagatggcacagcaaaatgga 557 Query: 376 tcttctgc 383 ||||||| Sbjct: 558 gcttctgc 565 Score = 129 bits (65), Expect = 1e-26 Identities = 110/125 (88%) Strand = Plus / Plus Query: 409 ttggagcagcttgtcaattcccatcctgtcatcttatttatgaagggaaatccaggagaa 468 |||||||||||||||||||||||||| ||| |||||||||||||||||| || | || Sbjct: 600 ttggagcagcttgtcaattcccatcccgtcttcttatttatgaagggaacccctgagcaa 659 Query: 469 ccaaggtgtgggttcagccgaagggtggttgacattttgaagcaggaaggtgttgaattt 528 ||||||||||| ||||| |||| || |||||| |||||||||||||||| ||||||||| Sbjct: 660 ccaaggtgtggtttcagtcgaaaagtagttgacgttttgaagcaggaaggagttgaattt 719 Query: 529 gggag 533 ||||| Sbjct: 720 gggag 724
>gb|AY105414.1| Zea mays PCO079032 mRNA sequence Length = 2077 Score = 432 bits (218), Expect = e-118 Identities = 326/362 (90%) Strand = Plus / Plus Query: 31 gtgcacttctgggcggcctggtgcgaggcctccaagcagatggacgaggtcttcgcccac 90 ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||| Sbjct: 329 gtgcacttctgggcgtcctggtgcgaggcgtccaagcagatggacgaggtcttcgcgcac 388 Query: 91 ctcgccgtcgacttcccccacgcgctcttcctcagggttgaagctgaagaacaaccggaa 150 |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||| Sbjct: 389 ctcgccgtcgacttcccccacgcggccttcctccgggttgaagctgaagaacaacctgaa 448 Query: 151 atttcagaggcatatggagttacagcagtgccatactttgttttctgcaaggaaggcaaa 210 || |||||||| |||||||||||||| |||||||| |||||||||||||||||||| ||| Sbjct: 449 atatcagaggcgtatggagttacagcggtgccatattttgttttctgcaaggaaggaaaa 508 Query: 211 cctgttgataccttggagggcgcaaacccagccagcctggccaataaggttgcaaagtta 270 ||| ||||| |||||||| | ||||||||||||||||||||||||||||||||| || Sbjct: 509 attgtcgatactttggagggagtaaacccagccagcctggccaataaggttgcaaaagta 568 Query: 271 gctgggcctgccaatgttgctcagtctgctgtacctgctagcttgggggtggctgccggg 330 ||||||||||| | ||||||| |||||||||||||||||||| | || || ||||| ||| Sbjct: 569 gctgggcctgctagtgttgctgagtctgctgtacctgctagccttggagtcgctgctggg 628 Query: 331 cctgctgtactcgaaaaagtccaagaaatggcacggcaaaatggatcttctgctgctgaa 390 ||||||||||| ||||| ||||| | ||||||| || ||||||||||||||||| |||| Sbjct: 629 cctgctgtacttgaaaacatccaaaagatggcacagcgaaatggatcttctgctgttgaa 688 Query: 391 ag 392 || Sbjct: 689 ag 690 Score = 127 bits (64), Expect = 4e-26 Identities = 118/136 (86%) Strand = Plus / Plus Query: 398 tgaagaagcgtttggagcagcttgtcaattcccatcctgtcatcttatttatgaagggaa 457 |||| ||||| |||||||||||||||||||||||||| || | |||||||||||||||| Sbjct: 720 tgaataagcgattggagcagcttgtcaattcccatcccgtgtttttatttatgaagggaa 779 Query: 458 atccaggagaaccaaggtgtgggttcagccgaagggtggttgacattttgaagcaggaag 517 |||| | ||||||||||||| |||||||| | ||| ||||||||||||||||||||| Sbjct: 780 ccccagaacaaccaaggtgtggtttcagccgtaaagtgattgacattttgaagcaggaag 839 Query: 518 gtgttgaatttgggag 533 | || |||||||||| Sbjct: 840 gggtgaaatttgggag 855
>gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete sequence Length = 146664 Score = 206 bits (104), Expect = 5e-50 Identities = 164/184 (89%) Strand = Plus / Plus Query: 200 aggaaggcaaacctgttgataccttggagggcgcaaacccagccagcctggccaataagg 259 ||||||| ||| |||||||||| ||||||| ||||| ||||||||| |||||||||||| Sbjct: 86068 aggaaggtaaaactgttgatactctggagggtgcaaatccagccagcttggccaataagg 86127 Query: 260 ttgcaaagttagctgggcctgccaatgttgctcagtctgctgtacctgctagcttggggg 319 |||||||||||||||||||||||| |||||| |||||||||| ||||||||| |||| | Sbjct: 86128 ttgcaaagttagctgggcctgccagcgttgctgagtctgctgtgcctgctagcctgggtg 86187 Query: 320 tggctgccgggcctgctgtactcgaaaaagtccaagaaatggcacggcaaaatggatctt 379 ||||||| |||||||||||||| ||||| || ||||| ||||||| |||||||||| ||| Sbjct: 86188 tggctgctgggcctgctgtacttgaaaaggttcaagagatggcacagcaaaatggagctt 86247 Query: 380 ctgc 383 |||| Sbjct: 86248 ctgc 86251 Score = 168 bits (85), Expect = 1e-38 Identities = 106/113 (93%) Strand = Plus / Plus Query: 16 gcgcgggccgccgcggtgcacttctgggcggcctggtgcgaggcctccaagcagatggac 75 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 84047 gcgcgggccgccgcggtgcacttctgggcggcgtggtgcgaggcgtccaagcagatggac 84106 Query: 76 gaggtcttcgcccacctcgccgtcgacttcccccacgcgctcttcctcagggt 128 ||||||||||| |||||||||||||||||| ||||||| |||||||| |||| Sbjct: 84107 gaggtcttcgcgcacctcgccgtcgacttctcccacgccgtcttcctccgggt 84159 Score = 129 bits (65), Expect = 1e-26 Identities = 110/125 (88%) Strand = Plus / Plus Query: 409 ttggagcagcttgtcaattcccatcctgtcatcttatttatgaagggaaatccaggagaa 468 |||||||||||||||||||||||||| ||| |||||||||||||||||| || | || Sbjct: 86286 ttggagcagcttgtcaattcccatcccgtcttcttatttatgaagggaacccctgagcaa 86345 Query: 469 ccaaggtgtgggttcagccgaagggtggttgacattttgaagcaggaaggtgttgaattt 528 ||||||||||| ||||| |||| || |||||| |||||||||||||||| ||||||||| Sbjct: 86346 ccaaggtgtggtttcagtcgaaaagtagttgacgttttgaagcaggaaggagttgaattt 86405 Query: 529 gggag 533 ||||| Sbjct: 86406 gggag 86410 Score = 117 bits (59), Expect = 4e-23 Identities = 68/71 (95%) Strand = Plus / Plus Query: 126 ggttgaagctgaagaacaaccggaaatttcagaggcatatggagttacagcagtgccata 185 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 85333 ggttgaagctgaggaacaacccgaaatttcagaggcatatggagttacagcagtgccata 85392 Query: 186 ctttgttttct 196 |||||||||| Sbjct: 85393 ttttgttttct 85403
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 206 bits (104), Expect = 5e-50 Identities = 164/184 (89%) Strand = Plus / Plus Query: 200 aggaaggcaaacctgttgataccttggagggcgcaaacccagccagcctggccaataagg 259 ||||||| ||| |||||||||| ||||||| ||||| ||||||||| |||||||||||| Sbjct: 18582657 aggaaggtaaaactgttgatactctggagggtgcaaatccagccagcttggccaataagg 18582716 Query: 260 ttgcaaagttagctgggcctgccaatgttgctcagtctgctgtacctgctagcttggggg 319 |||||||||||||||||||||||| |||||| |||||||||| ||||||||| |||| | Sbjct: 18582717 ttgcaaagttagctgggcctgccagcgttgctgagtctgctgtgcctgctagcctgggtg 18582776 Query: 320 tggctgccgggcctgctgtactcgaaaaagtccaagaaatggcacggcaaaatggatctt 379 ||||||| |||||||||||||| ||||| || ||||| ||||||| |||||||||| ||| Sbjct: 18582777 tggctgctgggcctgctgtacttgaaaaggttcaagagatggcacagcaaaatggagctt 18582836 Query: 380 ctgc 383 |||| Sbjct: 18582837 ctgc 18582840 Score = 168 bits (85), Expect = 1e-38 Identities = 106/113 (93%) Strand = Plus / Plus Query: 16 gcgcgggccgccgcggtgcacttctgggcggcctggtgcgaggcctccaagcagatggac 75 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 18580636 gcgcgggccgccgcggtgcacttctgggcggcgtggtgcgaggcgtccaagcagatggac 18580695 Query: 76 gaggtcttcgcccacctcgccgtcgacttcccccacgcgctcttcctcagggt 128 ||||||||||| |||||||||||||||||| ||||||| |||||||| |||| Sbjct: 18580696 gaggtcttcgcgcacctcgccgtcgacttctcccacgccgtcttcctccgggt 18580748 Score = 129 bits (65), Expect = 1e-26 Identities = 110/125 (88%) Strand = Plus / Plus Query: 409 ttggagcagcttgtcaattcccatcctgtcatcttatttatgaagggaaatccaggagaa 468 |||||||||||||||||||||||||| ||| |||||||||||||||||| || | || Sbjct: 18582875 ttggagcagcttgtcaattcccatcccgtcttcttatttatgaagggaacccctgagcaa 18582934 Query: 469 ccaaggtgtgggttcagccgaagggtggttgacattttgaagcaggaaggtgttgaattt 528 ||||||||||| ||||| |||| || |||||| |||||||||||||||| ||||||||| Sbjct: 18582935 ccaaggtgtggtttcagtcgaaaagtagttgacgttttgaagcaggaaggagttgaattt 18582994 Query: 529 gggag 533 ||||| Sbjct: 18582995 gggag 18582999 Score = 117 bits (59), Expect = 4e-23 Identities = 68/71 (95%) Strand = Plus / Plus Query: 126 ggttgaagctgaagaacaaccggaaatttcagaggcatatggagttacagcagtgccata 185 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 18581922 ggttgaagctgaggaacaacccgaaatttcagaggcatatggagttacagcagtgccata 18581981 Query: 186 ctttgttttct 196 |||||||||| Sbjct: 18581982 ttttgttttct 18581992
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 206 bits (104), Expect = 5e-50 Identities = 164/184 (89%) Strand = Plus / Plus Query: 200 aggaaggcaaacctgttgataccttggagggcgcaaacccagccagcctggccaataagg 259 ||||||| ||| |||||||||| ||||||| ||||| ||||||||| |||||||||||| Sbjct: 18593110 aggaaggtaaaactgttgatactctggagggtgcaaatccagccagcttggccaataagg 18593169 Query: 260 ttgcaaagttagctgggcctgccaatgttgctcagtctgctgtacctgctagcttggggg 319 |||||||||||||||||||||||| |||||| |||||||||| ||||||||| |||| | Sbjct: 18593170 ttgcaaagttagctgggcctgccagcgttgctgagtctgctgtgcctgctagcctgggtg 18593229 Query: 320 tggctgccgggcctgctgtactcgaaaaagtccaagaaatggcacggcaaaatggatctt 379 ||||||| |||||||||||||| ||||| || ||||| ||||||| |||||||||| ||| Sbjct: 18593230 tggctgctgggcctgctgtacttgaaaaggttcaagagatggcacagcaaaatggagctt 18593289 Query: 380 ctgc 383 |||| Sbjct: 18593290 ctgc 18593293 Score = 168 bits (85), Expect = 1e-38 Identities = 106/113 (93%) Strand = Plus / Plus Query: 16 gcgcgggccgccgcggtgcacttctgggcggcctggtgcgaggcctccaagcagatggac 75 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 18591089 gcgcgggccgccgcggtgcacttctgggcggcgtggtgcgaggcgtccaagcagatggac 18591148 Query: 76 gaggtcttcgcccacctcgccgtcgacttcccccacgcgctcttcctcagggt 128 ||||||||||| |||||||||||||||||| ||||||| |||||||| |||| Sbjct: 18591149 gaggtcttcgcgcacctcgccgtcgacttctcccacgccgtcttcctccgggt 18591201 Score = 129 bits (65), Expect = 1e-26 Identities = 110/125 (88%) Strand = Plus / Plus Query: 409 ttggagcagcttgtcaattcccatcctgtcatcttatttatgaagggaaatccaggagaa 468 |||||||||||||||||||||||||| ||| |||||||||||||||||| || | || Sbjct: 18593328 ttggagcagcttgtcaattcccatcccgtcttcttatttatgaagggaacccctgagcaa 18593387 Query: 469 ccaaggtgtgggttcagccgaagggtggttgacattttgaagcaggaaggtgttgaattt 528 ||||||||||| ||||| |||| || |||||| |||||||||||||||| ||||||||| Sbjct: 18593388 ccaaggtgtggtttcagtcgaaaagtagttgacgttttgaagcaggaaggagttgaattt 18593447 Query: 529 gggag 533 ||||| Sbjct: 18593448 gggag 18593452 Score = 117 bits (59), Expect = 4e-23 Identities = 68/71 (95%) Strand = Plus / Plus Query: 126 ggttgaagctgaagaacaaccggaaatttcagaggcatatggagttacagcagtgccata 185 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 18592375 ggttgaagctgaggaacaacccgaaatttcagaggcatatggagttacagcagtgccata 18592434 Query: 186 ctttgttttct 196 |||||||||| Sbjct: 18592435 ttttgttttct 18592445
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 48.1 bits (24), Expect = 0.030 Identities = 24/24 (100%) Strand = Plus / Minus Query: 12 cggcgcgcgggccgccgcggtgca 35 |||||||||||||||||||||||| Sbjct: 3458278 cggcgcgcgggccgccgcggtgca 3458255
>gb|AC127689.4| Mus musculus BAC clone RP24-206I5 from chromosome 5, complete sequence Length = 155413 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 343 gaaaaagtccaagaaatggcac 364 |||||||||||||||||||||| Sbjct: 18372 gaaaaagtccaagaaatggcac 18351
>gb|AC158945.6| Mus musculus chromosome 5, clone RP23-286J20, complete sequence Length = 210182 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 343 gaaaaagtccaagaaatggcac 364 |||||||||||||||||||||| Sbjct: 5746 gaaaaagtccaagaaatggcac 5767
>gb|AC159012.2| Gallus gallus BAC clone CH261-5N5 from chromosome unknown, complete sequence Length = 231341 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 506 tgaagcaggaaggtgttgaatt 527 |||||||||||||||||||||| Sbjct: 132535 tgaagcaggaaggtgttgaatt 132556
>emb|CR676175.2|CNS0FKP7 Tetraodon nigroviridis full-length cDNA Length = 1730 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 3 gctgcagggcggcgcgcgggccgcc 27 ||||||||||||||||| ||||||| Sbjct: 293 gctgcagggcggcgcgctggccgcc 317
>emb|CR383660.9| Zebrafish DNA sequence from clone DKEY-1H22 in linkage group 14, complete sequence Length = 139631 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 375 atcttctgctgctgaaagtac 395 ||||||||||||||||||||| Sbjct: 74747 atcttctgctgctgaaagtac 74727
>gb|AC109666.7| Rattus norvegicus 4 BAC CH230-252C14 (Children's Hospital Oakland Research Institute) complete sequence Length = 214386 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 490 agggtggttgacattttgaag 510 ||||||||||||||||||||| Sbjct: 168339 agggtggttgacattttgaag 168359
>emb|Z99107.2|BSUB0004 Bacillus subtilis complete genome (section 4 of 21): from 611631 to 813719 Length = 202089 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 494 tggttgacattttgaagcaggaagg 518 ||||||||||||||||||| ||||| Sbjct: 17346 tggttgacattttgaagcatgaagg 17370
>gb|AY278739.1| Rattus norvegicus paraplegin (Spg7) mRNA, complete cds Length = 2479 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 120 cctcagggttgaagctgaagaacaa 144 ||||||||||||||| ||||||||| Sbjct: 359 cctcagggttgaagcagaagaacaa 383
>emb|BX548054.19| Zebrafish DNA sequence from clone CH211-237N4 in linkage group 14, complete sequence Length = 128658 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 atcttctgctgctgaaagtac 395 ||||||||||||||||||||| Sbjct: 42691 atcttctgctgctgaaagtac 42711
>gb|AC118347.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0043E10, complete sequence Length = 124591 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 93 cgccgtcgacttcccccacgc 113 ||||||||||||||||||||| Sbjct: 67129 cgccgtcgacttcccccacgc 67149
>gb|AC011446.6|AC011446 Homo sapiens chromosome 19 clone CTC-250I14, complete sequence Length = 115932 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 158 aggcatatggagttacagcagtgcc 182 |||||||||||| |||||||||||| Sbjct: 40140 aggcatatggagatacagcagtgcc 40116
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 cgccgtcgacttcccccacgc 113 ||||||||||||||||||||| Sbjct: 22127575 cgccgtcgacttcccccacgc 22127555
>ref|NM_181388.2| Rattus norvegicus spastic paraplegia 7 homolog (human) (Spg7), mRNA Length = 2479 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 120 cctcagggttgaagctgaagaacaa 144 ||||||||||||||| ||||||||| Sbjct: 359 cctcagggttgaagcagaagaacaa 383
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 cgccgtcgacttcccccacgc 113 ||||||||||||||||||||| Sbjct: 22437486 cgccgtcgacttcccccacgc 22437466
>dbj|D88802.1| Bacillus subtilis DNA for phoB-rrnE-groESL region, complete cds Length = 36308 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 494 tggttgacattttgaagcaggaagg 518 ||||||||||||||||||| ||||| Sbjct: 15447 tggttgacattttgaagcatgaagg 15471
>gb|AC166710.7| Mus musculus chromosome 1, clone RP24-252K15, complete sequence Length = 156244 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 ctgctagcttgggggtggct 324 |||||||||||||||||||| Sbjct: 106649 ctgctagcttgggggtggct 106668
>ref|NM_193907.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 555 Score = 40.1 bits (20), Expect = 7.2 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 2 ggctgcagggcggcgcgcgggccgccgcggtg 33 ||||||| |||||||||| ||||||||||||| Sbjct: 383 ggctgcatggcggcgcgc-ggccgccgcggtg 353
>ref|XM_472754.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1038 Score = 40.1 bits (20), Expect = 7.2 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 1 gggctgcagggcggcgcgcg-ggccgccgcgg 31 |||||||| ||||||||||| ||||||||||| Sbjct: 741 gggctgcatggcggcgcgcgcggccgccgcgg 710
>gb|BT017401.1| Zea mays clone EL01N0329A09.c mRNA sequence Length = 1199 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 458 atccaggagaaccaaggtgt 477 |||||||||||||||||||| Sbjct: 869 atccaggagaaccaaggtgt 888
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 tcttcgcccacctcgccgtc 99 |||||||||||||||||||| Sbjct: 728189 tcttcgcccacctcgccgtc 728170
>gb|AC139562.8| Mus musculus chromosome 5, clone RP24-180G11, complete sequence Length = 168158 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 tcccatcctgtcatcttatt 446 |||||||||||||||||||| Sbjct: 126122 tcccatcctgtcatcttatt 126141
>ref|NM_011780.2| Mus musculus a disintegrin and metallopeptidase domain 23 (Adam23), mRNA Length = 6656 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 gcagggcggcgcgcgggccg 25 |||||||||||||||||||| Sbjct: 427 gcagggcggcgcgcgggccg 408
>ref|XM_622578.3| PREDICTED: Mus musculus a disintegrin and metallopeptidase domain 23, transcript variant 2 (Adam23), mRNA Length = 2894 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 gcagggcggcgcgcgggccg 25 |||||||||||||||||||| Sbjct: 441 gcagggcggcgcgcgggccg 422
>ref|XM_903238.1| PREDICTED: Mus musculus a disintegrin and metallopeptidase domain 23, transcript variant 4 (Adam23), mRNA Length = 2445 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 gcagggcggcgcgcgggccg 25 |||||||||||||||||||| Sbjct: 120 gcagggcggcgcgcgggccg 101
>ref|XM_903237.1| PREDICTED: Mus musculus a disintegrin and metallopeptidase domain 23, transcript variant 3 (Adam23), mRNA Length = 2445 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 gcagggcggcgcgcgggccg 25 |||||||||||||||||||| Sbjct: 120 gcagggcggcgcgcgggccg 101
>ref|XM_389623.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09447.1) partial mRNA Length = 2970 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 ctccaagcagatggacgagg 79 |||||||||||||||||||| Sbjct: 2895 ctccaagcagatggacgagg 2914
>gb|AC126439.3| Mus musculus BAC clone RP24-290I17 from chromosome 14, complete sequence Length = 163978 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 actttgttttctgcaaggaa 204 |||||||||||||||||||| Sbjct: 119332 actttgttttctgcaaggaa 119351
>ref|NM_001029899.1| Rattus norvegicus a disintegrin and metallopeptidase domain 23 (predicted) (Adam23_predicted), mRNA Length = 2876 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 gcagggcggcgcgcgggccg 25 |||||||||||||||||||| Sbjct: 199 gcagggcggcgcgcgggccg 180
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 8 agggcggcgcgcgggccgccgcgg 31 ||||||||| |||||||||||||| Sbjct: 654412 agggcggcgggcgggccgccgcgg 654435
>emb|AL683801.10| Mouse DNA sequence from clone DN-74E14 on chromosome 1 Contains the 5' end of the Adam23 gene for a disintegrin and metalloprotease domain 23 and a CpG island, complete sequence Length = 199536 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 gcagggcggcgcgcgggccg 25 |||||||||||||||||||| Sbjct: 57308 gcagggcggcgcgcgggccg 57289
>emb|AL645637.18| Mouse DNA sequence from clone RP23-388B5 on chromosome 1 Contains the 5' end of the Adam23 gene for a disintegrin and metalloprotease domain 23, a pleckstrin homology domain-containing family A (phosphoinositide binding specific) member 3 (Plekha3) pseudogene, a px19-like protein (PX19) pseudogene and a CpG island, complete sequence Length = 207629 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 gcagggcggcgcgcgggccg 25 |||||||||||||||||||| Sbjct: 104485 gcagggcggcgcgcgggccg 104466
>emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072F16, complete sequence Length = 176383 Score = 40.1 bits (20), Expect = 7.2 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 1 gggctgcagggcggcgcgcg-ggccgccgcgg 31 |||||||| ||||||||||| ||||||||||| Sbjct: 95190 gggctgcatggcggcgcgcgcggccgccgcgg 95159
>gb|DQ096844.1| Xenopus laevis lapl06 mRNA, complete sequence Length = 843 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 ggaaggcaaacctgttgata 220 |||||||||||||||||||| Sbjct: 556 ggaaggcaaacctgttgata 575
>gb|AC103876.2| Homo sapiens chromosome 15, clone CTD-2282O12, complete sequence Length = 113199 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 gccagcctggccaataaggt 260 |||||||||||||||||||| Sbjct: 23992 gccagcctggccaataaggt 23973
>gb|AF312994.1|AF312994 Mus musculus chromosome 1 clone MML, complete sequence Length = 228283 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 aagcaggaaggtgttgaatt 527 |||||||||||||||||||| Sbjct: 38132 aagcaggaaggtgttgaatt 38151
>dbj|AK046677.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length enriched library, clone:B430307I20 product:a disintegrin and metalloprotease domain 23, full insert sequence Length = 2891 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 gcagggcggcgcgcgggccg 25 |||||||||||||||||||| Sbjct: 441 gcagggcggcgcgcgggccg 422
>dbj|AK083458.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030020C12 product:a disintegrin and metalloprotease domain 23, full insert sequence Length = 3541 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 gcagggcggcgcgcgggccg 25 |||||||||||||||||||| Sbjct: 397 gcagggcggcgcgcgggccg 378
>dbj|AK048306.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130048B16 product:unclassifiable, full insert sequence Length = 2785 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 508 aagcaggaaggtgttgaatt 527 |||||||||||||||||||| Sbjct: 1541 aagcaggaaggtgttgaatt 1560
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.2 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 1 gggctgcagggcggcgcgcg-ggccgccgcgg 31 |||||||| ||||||||||| ||||||||||| Sbjct: 23000734 gggctgcatggcggcgcgcgcggccgccgcgg 23000703
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.2 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 2 ggctgcagggcggcgcgcgggccgccgcggtg 33 ||||||| |||||||||| ||||||||||||| Sbjct: 15825113 ggctgcatggcggcgcgc-ggccgccgcggtg 15825143
>dbj|AP003536.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1096D03 Length = 184422 Score = 40.1 bits (20), Expect = 7.2 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 2 ggctgcagggcggcgcgcgggccgccgcggtg 33 ||||||| ||||||||||| |||||||||||| Sbjct: 52782 ggctgcatggcggcgcgcg-gccgccgcggtg 52812
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 gcggcgcgcgggccgccgcg 30 |||||||||||||||||||| Sbjct: 4519324 gcggcgcgcgggccgccgcg 4519305
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 gcgcgcgggccgccgcggtg 33 |||||||||||||||||||| Sbjct: 3290947 gcgcgcgggccgccgcggtg 3290928
>gb|AC120860.7| Mus musculus chromosome 1, clone RP23-26I10, complete sequence Length = 188326 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 aagcaggaaggtgttgaatt 527 |||||||||||||||||||| Sbjct: 108654 aagcaggaaggtgttgaatt 108635
>ref|XM_309074.2| Anopheles gambiae str. PEST ENSANGP00000019644 (ENSANGG00000017155), partial mRNA Length = 6441 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 gggcggcgcgcgggccgccg 28 |||||||||||||||||||| Sbjct: 1542 gggcggcgcgcgggccgccg 1523
>gb|AY108979.1| Zea mays PCO080401 mRNA sequence Length = 602 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 458 atccaggagaaccaaggtgt 477 |||||||||||||||||||| Sbjct: 519 atccaggagaaccaaggtgt 538
>gb|AC162461.6| Mus musculus chromosome 5, clone RP23-265I19, complete sequence Length = 233632 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 tcccatcctgtcatcttatt 446 |||||||||||||||||||| Sbjct: 14204 tcccatcctgtcatcttatt 14223
>emb|AL928922.7| Mouse DNA sequence from clone RP23-431J22 on chromosome 2, complete sequence Length = 203047 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 506 tgaagcaggaaggtgttgaatttg 529 |||||||||||||| ||||||||| Sbjct: 185531 tgaagcaggaaggtcttgaatttg 185554
>dbj|AB009673.1| Mus musculus mRNA for ADAM23, complete cds Length = 2891 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 gcagggcggcgcgcgggccg 25 |||||||||||||||||||| Sbjct: 199 gcagggcggcgcgcgggccg 180
>dbj|AB070951.1| Streptomyces avermitilis peptide-2 biosynthetic gene cluster Length = 32748 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 gcggcgcgcgggccgccgcg 30 |||||||||||||||||||| Sbjct: 1536 gcggcgcgcgggccgccgcg 1555 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,535,763 Number of Sequences: 3902068 Number of extensions: 5535763 Number of successful extensions: 152085 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 151193 Number of HSP's gapped (non-prelim): 892 length of query: 533 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 510 effective length of database: 17,143,297,704 effective search space: 8743081829040 effective search space used: 8743081829040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)