ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal23n13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RA6I1_MOUSE (Q6PAL8) Rab6-interacting protein 1 (Rab6IP1) 31 1.0
2RA6I1_HUMAN (Q6IQ26) Rab6-interacting protein 1 (Rab6IP1) 31 1.0
3ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7 29 3.0

>RA6I1_MOUSE (Q6PAL8) Rab6-interacting protein 1 (Rab6IP1)|
          Length = 1287

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 98   WLCLDGCLGESQLVCRPQLITEEAXLCRALG 6
            W+C+ G LGE+Q++  P+ + E    C+ LG
Sbjct: 976  WICISGELGETQILQIPRNVLEMTFECQNLG 1006



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>RA6I1_HUMAN (Q6IQ26) Rab6-interacting protein 1 (Rab6IP1)|
          Length = 1287

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 98   WLCLDGCLGESQLVCRPQLITEEAXLCRALG 6
            W+C+ G LGE+Q++  P+ + E    C+ LG
Sbjct: 976  WICISGELGETQIMQIPRNVLEMTFECQNLG 1006



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>ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7|
          Length = 542

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 86  PSKARLCILCSKQGWW*Y*CEAPAQE 163
           P K R C LCS++G   Y C AP  E
Sbjct: 258 PRKVRRCFLCSRRGHLLYSCPAPLCE 283


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,079,414
Number of Sequences: 219361
Number of extensions: 570477
Number of successful extensions: 1780
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1778
length of database: 80,573,946
effective HSP length: 37
effective length of database: 72,457,589
effective search space used: 1738982136
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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