ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal23n13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_189108.2| Oryza sativa (japonica cultivar-group), mRNA Length = 934 Score = 129 bits (65), Expect = 3e-27 Identities = 113/128 (88%), Gaps = 1/128 (0%) Strand = Plus / Plus Query: 2 ggtgaccaagtgctctacacaagncagcttcttcggtgatgagttgtggccggcagacaa 61 |||||||| |||||||||||||| |||||||| || ||||| | ||||| ||||| || Sbjct: 347 ggtgaccaggtgctctacacaagt-agcttctttggagatgaactatggcctgcagataa 405 Query: 62 gctgggattcaccaagacagccatccaagcaaagccagactctgtatactttgtagtaag 121 |||||| |||||||||||||||||||| ||||||||||||||||| |||||||| || || Sbjct: 406 gctggggttcaccaagacagccatccaggcaaagccagactctgtctactttgtggttag 465 Query: 122 caggggtg 129 |||||||| Sbjct: 466 caggggtg 473
>ref|XM_507141.1| PREDICTED Oryza sativa (japonica cultivar-group), P0577B11.138 mRNA Length = 1003 Score = 129 bits (65), Expect = 3e-27 Identities = 113/128 (88%), Gaps = 1/128 (0%) Strand = Plus / Plus Query: 2 ggtgaccaagtgctctacacaagncagcttcttcggtgatgagttgtggccggcagacaa 61 |||||||| |||||||||||||| |||||||| || ||||| | ||||| ||||| || Sbjct: 377 ggtgaccaggtgctctacacaagt-agcttctttggagatgaactatggcctgcagataa 435 Query: 62 gctgggattcaccaagacagccatccaagcaaagccagactctgtatactttgtagtaag 121 |||||| |||||||||||||||||||| ||||||||||||||||| |||||||| || || Sbjct: 436 gctggggttcaccaagacagccatccaggcaaagccagactctgtctactttgtggttag 495 Query: 122 caggggtg 129 |||||||| Sbjct: 496 caggggtg 503
>dbj|AK070227.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041B21, full insert sequence Length = 934 Score = 129 bits (65), Expect = 3e-27 Identities = 113/128 (88%), Gaps = 1/128 (0%) Strand = Plus / Plus Query: 2 ggtgaccaagtgctctacacaagncagcttcttcggtgatgagttgtggccggcagacaa 61 |||||||| |||||||||||||| |||||||| || ||||| | ||||| ||||| || Sbjct: 347 ggtgaccaggtgctctacacaagt-agcttctttggagatgaactatggcctgcagataa 405 Query: 62 gctgggattcaccaagacagccatccaagcaaagccagactctgtatactttgtagtaag 121 |||||| |||||||||||||||||||| ||||||||||||||||| |||||||| || || Sbjct: 406 gctggggttcaccaagacagccatccaggcaaagccagactctgtctactttgtggttag 465 Query: 122 caggggtg 129 |||||||| Sbjct: 466 caggggtg 473
>dbj|AK060121.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-F09, full insert sequence Length = 1003 Score = 129 bits (65), Expect = 3e-27 Identities = 113/128 (88%), Gaps = 1/128 (0%) Strand = Plus / Plus Query: 2 ggtgaccaagtgctctacacaagncagcttcttcggtgatgagttgtggccggcagacaa 61 |||||||| |||||||||||||| |||||||| || ||||| | ||||| ||||| || Sbjct: 377 ggtgaccaggtgctctacacaagt-agcttctttggagatgaactatggcctgcagataa 435 Query: 62 gctgggattcaccaagacagccatccaagcaaagccagactctgtatactttgtagtaag 121 |||||| |||||||||||||||||||| ||||||||||||||||| |||||||| || || Sbjct: 436 gctggggttcaccaagacagccatccaggcaaagccagactctgtctactttgtggttag 495 Query: 122 caggggtg 129 |||||||| Sbjct: 496 caggggtg 503
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 121 bits (61), Expect = 8e-25 Identities = 109/124 (87%), Gaps = 1/124 (0%) Strand = Plus / Plus Query: 2 ggtgaccaagtgctctacacaagncagcttcttcggtgatgagttgtggccggcagacaa 61 |||||||| |||||||||||||| |||||||| || ||||| | ||||| ||||| || Sbjct: 3689264 ggtgaccaggtgctctacacaagt-agcttctttggagatgaactatggcctgcagataa 3689322 Query: 62 gctgggattcaccaagacagccatccaagcaaagccagactctgtatactttgtagtaag 121 |||||| |||||||||||||||||||| ||||||||||||||||| |||||||| || || Sbjct: 3689323 gctggggttcaccaagacagccatccaggcaaagccagactctgtctactttgtggttag 3689382 Query: 122 cagg 125 |||| Sbjct: 3689383 cagg 3689386
>dbj|AP005847.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ9990_A01 Length = 101684 Score = 121 bits (61), Expect = 8e-25 Identities = 109/124 (87%), Gaps = 1/124 (0%) Strand = Plus / Plus Query: 2 ggtgaccaagtgctctacacaagncagcttcttcggtgatgagttgtggccggcagacaa 61 |||||||| |||||||||||||| |||||||| || ||||| | ||||| ||||| || Sbjct: 12761 ggtgaccaggtgctctacacaagt-agcttctttggagatgaactatggcctgcagataa 12819 Query: 62 gctgggattcaccaagacagccatccaagcaaagccagactctgtatactttgtagtaag 121 |||||| |||||||||||||||||||| ||||||||||||||||| |||||||| || || Sbjct: 12820 gctggggttcaccaagacagccatccaggcaaagccagactctgtctactttgtggttag 12879 Query: 122 cagg 125 |||| Sbjct: 12880 cagg 12883
>dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0577B11 Length = 180355 Score = 121 bits (61), Expect = 8e-25 Identities = 109/124 (87%), Gaps = 1/124 (0%) Strand = Plus / Plus Query: 2 ggtgaccaagtgctctacacaagncagcttcttcggtgatgagttgtggccggcagacaa 61 |||||||| |||||||||||||| |||||||| || ||||| | ||||| ||||| || Sbjct: 167770 ggtgaccaggtgctctacacaagt-agcttctttggagatgaactatggcctgcagataa 167828 Query: 62 gctgggattcaccaagacagccatccaagcaaagccagactctgtatactttgtagtaag 121 |||||| |||||||||||||||||||| ||||||||||||||||| |||||||| || || Sbjct: 167829 gctggggttcaccaagacagccatccaggcaaagccagactctgtctactttgtggttag 167888 Query: 122 cagg 125 |||| Sbjct: 167889 cagg 167892
>gb|AY106565.1| Zea mays PCO096548 mRNA sequence Length = 1026 Score = 99.6 bits (50), Expect = 3e-18 Identities = 140/168 (83%), Gaps = 4/168 (2%) Strand = Plus / Plus Query: 17 tacacaagncagcttcttcggtgatgagttgtggccggcagacaagctgggattcaccaa 76 |||||||| |||||||||||| || ||| ||||||| || || ||||| || |||||||| Sbjct: 456 tacacaag-cagcttcttcggagacgagctgtggcctgcggataagcttgggttcaccaa 514 Query: 77 gacagccatccaagcaaagccagactctgtatactttgtagtaagcaggggtggtggtga 136 ||||||||||||||| ||| ||||||| || ||||| || || |||||| |||| || Sbjct: 515 gacagccatccaagcgaagtcagactccgtctacttcgtcgtgagcagg---ggtgccga 571 Query: 137 tattgatgtgaagcgcctgcccaagaggccggcgccccctcggtttgg 184 |||| ||||||||||| || |||||||||||||| || |||||||| Sbjct: 572 agttgacgtgaagcgcctacctaagaggccggcgccaccccggtttgg 619
>dbj|AP006703.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01O03, TM0588b, complete sequence Length = 45450 Score = 63.9 bits (32), Expect = 2e-07 Identities = 80/96 (83%) Strand = Plus / Minus Query: 30 ttcttcggtgatgagttgtggccggcagacaagctgggattcaccaagacagccatccaa 89 ||||| || ||||| |||||||| || || ||||| || ||||| || || || |||||| Sbjct: 29982 ttctttggggatgaattgtggcctgcggataagcttggcttcactaaaaccgcaatccaa 29923 Query: 90 gcaaagccagactctgtatactttgtagtaagcagg 125 || |||||||||||||| |||||||| || |||||| Sbjct: 29922 gctaagccagactctgtctactttgttgtcagcagg 29887
>ref|NM_104894.2| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding AT1G62130 mRNA, complete cds Length = 3078 Score = 42.1 bits (21), Expect = 0.59 Identities = 24/25 (96%) Strand = Plus / Plus Query: 30 ttcttcggtgatgagttgtggccgg 54 |||||||||||||||||||| |||| Sbjct: 1330 ttcttcggtgatgagttgtgtccgg 1354
>gb|AC000375.1|F19K23 Sequence of BAC F19K23 from Arabidopsis thaliana chromosome 1, complete sequence Length = 97451 Score = 42.1 bits (21), Expect = 0.59 Identities = 24/25 (96%) Strand = Plus / Minus Query: 30 ttcttcggtgatgagttgtggccgg 54 |||||||||||||||||||| |||| Sbjct: 27874 ttcttcggtgatgagttgtgtccgg 27850
>gb|U26679.1|ABU26679 Azospirillum brasilense lateral flagellin (laf1) gene, complete cds Length = 1573 Score = 42.1 bits (21), Expect = 0.59 Identities = 21/21 (100%) Strand = Plus / Minus Query: 159 aagaggccggcgccccctcgg 179 ||||||||||||||||||||| Sbjct: 1503 aagaggccggcgccccctcgg 1483
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 gttgtggccggcagacaagc 63 |||||||||||||||||||| Sbjct: 722541 gttgtggccggcagacaagc 722560
>gb|AC134622.3| Mus musculus BAC clone RP23-13I7 from 6, complete sequence Length = 203072 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 tatactttgtagtaagcagg 125 |||||||||||||||||||| Sbjct: 154809 tatactttgtagtaagcagg 154790
>gb|AC170189.2| Mus musculus BAC clone RP23-103L12 from chromosome 3, complete sequence Length = 204731 Score = 38.2 bits (19), Expect = 9.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 68 attcaccaagacagccatccaag 90 ||||| ||||||||||||||||| Sbjct: 98831 attcaacaagacagccatccaag 98853
>gb|AF030453.1| Homo sapiens chromosome 7 clone PAC 76h2 map 7q22, complete sequence Length = 125108 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 154 tgcccaagaggccggcgcc 172 ||||||||||||||||||| Sbjct: 48178 tgcccaagaggccggcgcc 48196
>gb|AC123738.8| Mus musculus, clone RP24-67N17, complete sequence Length = 163442 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 118 taagcaggggtggtggtga 136 ||||||||||||||||||| Sbjct: 70989 taagcaggggtggtggtga 71007
>gb|AC005088.3| Homo sapiens BAC clone CTA-313A17 from 7, complete sequence Length = 158663 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 154 tgcccaagaggccggcgcc 172 ||||||||||||||||||| Sbjct: 82609 tgcccaagaggccggcgcc 82627
>gb|AC141257.2| Homo sapiens chromosome 16 clone RP11-1277H1, complete sequence Length = 127816 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 73 ccaagacagccatccaagc 91 ||||||||||||||||||| Sbjct: 73418 ccaagacagccatccaagc 73400 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 73 ccaagacagccatccaagc 91 ||||||||||||||||||| Sbjct: 72328 ccaagacagccatccaagc 72310
>emb|CR974434.12| Pig DNA sequence from clone CH242-241E19 on chromosome 7, complete sequence Length = 186072 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 126 ggtggtggtgatattgatg 144 ||||||||||||||||||| Sbjct: 110641 ggtggtggtgatattgatg 110659
>gb|AC127685.4| Mus musculus BAC clone RP24-176M3 from chromosome 3, complete sequence Length = 166417 Score = 38.2 bits (19), Expect = 9.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 68 attcaccaagacagccatccaag 90 ||||| ||||||||||||||||| Sbjct: 151576 attcaacaagacagccatccaag 151554
>gb|AC123809.3| Mus musculus BAC clone RP24-174M12 from chromosome 10, complete sequence Length = 157123 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 126 ggtggtggtgatattgatg 144 ||||||||||||||||||| Sbjct: 37384 ggtggtggtgatattgatg 37402
>gb|AC095025.2| Sus scrofa clone RP44-93L12, complete sequence Length = 176757 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 154 tgcccaagaggccggcgcc 172 ||||||||||||||||||| Sbjct: 48667 tgcccaagaggccggcgcc 48649
>gb|AC145919.3| Pan troglodytes BAC clone RP43-10A14 from 7, complete sequence Length = 174235 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 154 tgcccaagaggccggcgcc 172 ||||||||||||||||||| Sbjct: 165713 tgcccaagaggccggcgcc 165731
>emb|AL365366.20| Human DNA sequence from clone RP11-553N16 on chromosome 1 Contains the 3' end of the gene for a novel protein (FLJ16613), a ribosomal protein L6 (RPL6) pseudogene, the EXO1 gene for exonuclease 1, the 5' end of a ribosomal protein L23a (RPL23a) pseudogene and a CpG island, complete sequence Length = 143967 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 130 gtggtgatattgatgtgaa 148 ||||||||||||||||||| Sbjct: 13078 gtggtgatattgatgtgaa 13060
>dbj|AB207138.1| Oryzias latipes nppc3 and nppb genes for C-type natriuretic peptide-3 precursor, B-type natriuretic peptide precursor, complete cds Length = 38866 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 atccaagcaaagccagact 102 ||||||||||||||||||| Sbjct: 6222 atccaagcaaagccagact 6204
>gb|AE010121.1| Streptococcus pyogenes strain MGAS8232, section 169 of 173 of the complete genome Length = 10935 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 127 gtggtggtgatattgatgt 145 ||||||||||||||||||| Sbjct: 6544 gtggtggtgatattgatgt 6562
>gb|AC159477.9| Mus musculus 10 BAC RP23-95I8 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 222553 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 126 ggtggtggtgatattgatg 144 ||||||||||||||||||| Sbjct: 5791 ggtggtggtgatattgatg 5773
>gb|AC091390.1|AC091390 Homo sapiens chromosome 7q22, complete sequence Length = 120166 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 154 tgcccaagaggccggcgcc 172 ||||||||||||||||||| Sbjct: 101551 tgcccaagaggccggcgcc 101533
>gb|AC148297.3| Pan troglodytes BAC clone CH251-542K24 from chromosome 7, complete sequence Length = 192516 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 154 tgcccaagaggccggcgcc 172 ||||||||||||||||||| Sbjct: 132490 tgcccaagaggccggcgcc 132508
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 119 aagcaggggtggtggtgat 137 ||||||||||||||||||| Sbjct: 11418989 aagcaggggtggtggtgat 11418971
>gb|AC116616.5| Homo sapiens BAC clone RP11-51M24 from 4, complete sequence Length = 94560 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 caaagccagactctgtata 109 ||||||||||||||||||| Sbjct: 13446 caaagccagactctgtata 13464
>dbj|AP006526.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0591A03 Length = 147043 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 119 aagcaggggtggtggtgat 137 ||||||||||||||||||| Sbjct: 52677 aagcaggggtggtggtgat 52659
>gb|AC084035.24| Homo sapiens 3 BAC RP11-153F10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 45256 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 126 ggtggtggtgatattgatg 144 ||||||||||||||||||| Sbjct: 29860 ggtggtggtgatattgatg 29878
>gb|AC153593.4| Mus musculus 6 BAC RP23-131B11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205164 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 131 tggtgatattgatgtgaag 149 ||||||||||||||||||| Sbjct: 21519 tggtgatattgatgtgaag 21501
>gb|AC115945.9| Mus musculus chromosome 3, clone RP24-555P13, complete sequence Length = 172240 Score = 38.2 bits (19), Expect = 9.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 68 attcaccaagacagccatccaag 90 ||||||||||||| ||||||||| Sbjct: 80625 attcaccaagacacccatccaag 80647
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 144 gtgaagcgcctgcccaaga 162 ||||||||||||||||||| Sbjct: 2683163 gtgaagcgcctgcccaaga 2683181
>emb|AL591411.14| Mouse DNA sequence from clone RP23-428M13 on chromosome 2, complete sequence Length = 155889 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 126 ggtggtggtgatattgatg 144 ||||||||||||||||||| Sbjct: 86692 ggtggtggtgatattgatg 86710
>emb|AL929120.7| Mouse DNA sequence from clone RP23-457H10 on chromosome 2, complete sequence Length = 178517 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 126 ggtggtggtgatattgatg 144 ||||||||||||||||||| Sbjct: 154252 ggtggtggtgatattgatg 154234
>gb|AC132443.3| Mus musculus BAC clone RP23-157C23 from 6, complete sequence Length = 179231 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 131 tggtgatattgatgtgaag 149 ||||||||||||||||||| Sbjct: 43210 tggtgatattgatgtgaag 43228
>gb|AC162033.11| Mus musculus chromosome 8, clone RP23-162M13, complete sequence Length = 217343 Score = 38.2 bits (19), Expect = 9.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 115 tagtaagcaggggtggtgg 133 ||||||||||||||||||| Sbjct: 115152 tagtaagcaggggtggtgg 115134 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,362,442 Number of Sequences: 3902068 Number of extensions: 1362442 Number of successful extensions: 99275 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99063 Number of HSP's gapped (non-prelim): 205 length of query: 186 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 164 effective length of database: 17,147,199,772 effective search space: 2812140762608 effective search space used: 2812140762608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
