>AAPC_PENCL (Q40784) Putative apospory-associated protein C|
          Length = 329

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 7/107 (6%)
 Frame = +3

Query: 108 EERKKRIYNTAPSKFTTIDQVSSSLG*MIVVIHRSICPLMIWFVQSSGLGFRLVRMGFED 287
           E    ++Y  APSK   ID                               F + + G  D
Sbjct: 224 ESEVDKVYLAAPSKIAIIDHEKKKT-------------------------FVVTKEGLPD 258

Query: 288 MYLGSPGGMYDKFGNDY-------FLCTGPASILVPVVVGPGEEWRG 407
             + +P     K   D+        LC  PA++  P+ + PGEEWRG
Sbjct: 259 AVVWNPWDKKAKAMQDFGDAEYKNMLCVEPAAVEKPITLKPGEEWRG 305

>GATA3_CHICK (P23825) GATA-binding factor 3 (GATA-3) (Transcription factor|
           NF-E1C)
          Length = 444

 Score = 32.7 bits (73), Expect = 0.68
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = -2

Query: 454 HHQKKSYKLSCSMTCAPLHSSPGPTTTGTRMDAGPVQRK*SLPNLSYIPPGLPRYMSSNP 275
           HH    + LS     +  HSSPGP +      +  +    S P+L   PP  P+ +S +P
Sbjct: 106 HHSASPWNLSPFSKTSIHHSSPGPLSVYPPASSSTLSAGHSSPHLFTFPPTPPKDVSPDP 165

Query: 274 ILTS 263
            +++
Sbjct: 166 SIST 169

>GATA3_MOUSE (P23772) Trans-acting T-cell-specific transcription factor GATA-3|
           (GATA-binding factor 3)
          Length = 443

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = -2

Query: 454 HHQKKSYKLSCSMTCAPLHSSPGPTTTGTRMDAGPVQRK*SLPNLSYIPPGLPRYMSSNP 275
           HH    + LS     +  H SPGP +      +  +    S P+L   PP  P+ +S +P
Sbjct: 105 HHTASPWNLSPFSKTSIHHGSPGPLSVYPPASSSSLAAGHSSPHLFTFPPTPPKDVSPDP 164

Query: 274 ILTS 263
            L++
Sbjct: 165 SLST 168

>GATA3_BRARE (Q91428) Transcription factor GATA-3 (GATA-binding factor 3)|
          Length = 438

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = -2

Query: 454 HHQKKSYKLSCSMTCAPLHSSPGPTTTGTRMDAGPVQRK*SLPNLSYIPPGLPRYMSSNP 275
           HH    + L      +  HSSPGP +      +  +    S P+L   PP  P+ +S +P
Sbjct: 99  HHSTSPWNLGPFPKTSLHHSSPGPLSVYPPASSSSLSAGHSSPHLFTFPPTPPKDVSPDP 158

Query: 274 ILTS 263
            +++
Sbjct: 159 AIST 162

>GATA3_HUMAN (P23771) Trans-acting T-cell-specific transcription factor GATA-3|
           (GATA-binding factor 3)
          Length = 443

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = -2

Query: 454 HHQKKSYKLSCSMTCAPLHSSPGPTTTGTRMDAGPVQRK*SLPNLSYIPPGLPRYMSSNP 275
           HH    + LS     +  H SPGP +      +  +    + P+L   PP  P+ +S +P
Sbjct: 106 HHTASPWNLSPFSKTSIHHGSPGPLSVYPPASSSSLSGGHASPHLFTFPPTPPKDVSPDP 165

Query: 274 ILTS 263
            L++
Sbjct: 166 SLST 169

>SEM4F_RAT (Q9Z143) Semaphorin-4F precursor (Semaphorin W) (Sema W)|
          Length = 776

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -1

Query: 299 AQVHVLEPHPHKPEPQPARLHKPYHQW 219
           AQ+ VLE     PEPQP    K YH W
Sbjct: 475 AQLSVLEDLALFPEPQPVESMKLYHDW 501

>YT44_STRFR (P20188) Hypothetical 44.4 kDa protein in transposon Tn4556|
          Length = 395

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 293 VHVLEPHPHKPEPQPARLHKP 231
           +H+   HPH+P PQP +L  P
Sbjct: 248 LHLRTRHPHRPAPQPVQLRDP 268

>SEM4F_MOUSE (Q9Z123) Semaphorin-4F precursor (Semaphorin W) (Sema W)|
          Length = 777

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -1

Query: 299 AQVHVLEPHPHKPEPQPARLHKPYHQW 219
           AQ+ VLE     PEPQP    K YH W
Sbjct: 476 AQLSVLEDLALFPEPQPVESMKLYHDW 502

>SEM4F_HUMAN (O95754) Semaphorin-4F precursor (Semaphorin W) (Sema W)|
           (Semaphorin M) (Sema M)
          Length = 770

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -1

Query: 299 AQVHVLEPHPHKPEPQPARLHKPYHQW 219
           AQ+ VLE     PEPQP    K YH W
Sbjct: 470 AQLSVLEDLALFPEPQPVENMKLYHSW 496

>YA78_SCHPO (Q09762) Hypothetical protein C24H6.08 in chromosome I|
          Length = 220

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -2

Query: 334 SLPNLSYIPPGLPRYMSSNPILTSLNPSPLDCTNHIISGQIDR*MTTIIHPRDELTWSM 158
           S+P +S  P  L +  S N I T+ N +  DC N      +   +  II  +  L+ S+
Sbjct: 86  SVPQISSNPLNLMKKSSDNDIFTTFNDTTNDCMNEASCEDVRHSLLQIIESKSNLSDSV 144


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,515,251
Number of Sequences: 219361
Number of extensions: 1321016
Number of successful extensions: 3765
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3762
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)