ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal23n12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 220 4e-54
2gb|AC099401.2| Oryza sativa (japonica cultivar-group) chromosome... 220 4e-54
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 220 4e-54
4ref|XM_470256.1| Oryza sativa (japonica cultivar-group), predic... 218 1e-53
5dbj|AK066591.1| Oryza sativa (japonica cultivar-group) cDNA clon... 218 1e-53
6gb|AY112221.1| Zea mays CL58622_1 mRNA sequence 198 1e-47
7gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
8gb|AF333066.1| Anguillid herpesvirus polymerase gene, partial cds 42 1.9
9dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
10emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 42 1.9
11gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
12ref|XM_468503.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.4
13ref|XM_463635.1| Oryza sativa (japonica cultivar-group), predic... 40 7.4
14ref|XM_463632.1| Oryza sativa (japonica cultivar-group), predic... 40 7.4
15gb|AY208917.2| Pseudomonas sp. ND6 plasmid pND6-1, complete sequ... 40 7.4
16gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 7.4
17ref|XM_581852.2| PREDICTED: Bos taurus similar to Epsin-3 (EPS-1... 40 7.4
18emb|X61927.1|PCPPC1 P.cepacia plasmid PPC1 DNA 40 7.4
19gb|BC112775.1| Bos taurus similar to Epsin-3 (EPS-15 interacting... 40 7.4
20emb|AL645803.19| Mouse DNA sequence from clone RP23-119N24 on ch... 40 7.4
21emb|BX842584.1| Mycobacterium tuberculosis H37Rv complete genome... 40 7.4
22emb|BX248347.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 7.4
23dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
24gb|AC107619.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 7.4
25gb|AC008860.7| Homo sapiens chromosome 5 clone CTD-2185A1, compl... 40 7.4
26gb|AC008577.7| Homo sapiens chromosome 5 clone CTC-558D17, compl... 40 7.4
27gb|AC011208.5|AC011208 Homo sapiens chromosome 18, clone RP11-13... 40 7.4
28dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
29dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
30dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
31dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
32dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
33dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
34dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
35gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 7.4
36gb|AC112204.2| Homo sapiens chromosome 5 clone RP11-79C6, comple... 40 7.4
37dbj|AP004776.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
38gb|AE004994.1| Halobacterium sp. NRC-1 section 25 of 170 of the ... 40 7.4
39ref|XM_561331.1| Anopheles gambiae str. PEST ENSANGP00000025558 ... 40 7.4
40dbj|AK099149.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.4
41dbj|AK099125.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.4
42dbj|AK071688.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.4
43dbj|AK069159.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.4
44dbj|AK060332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.4
45dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.4
46gb|AY859695.1| Mycobacterium conceptionae CIP 108544 RNA polymer... 40 7.4
47gb|AC006924.3|AC006924 Homo sapiens, clone hRPK.32_A_1, complete... 40 7.4
48gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 7.4
49gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.4
50emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa... 40 7.4
51emb|AL606654.3|OSJN00100 Oryza sativa genomic DNA, chromosome 4,... 40 7.4
52gb|AD000012.1|MSGY126 Mycobacterium tuberculosis sequence from c... 40 7.4 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  220 bits (111), Expect = 4e-54
 Identities = 141/151 (93%)
 Strand = Plus / Minus

                                                                           
Query: 19      aggagccccggcagggcgcctggaccgtggaggagaacctctacaccatcctcaagaaga 78
               |||||||||||||||| |  |||||||||||||| |||||||||||||||||||||||||
Sbjct: 3103046 aggagccccggcagggggtgtggaccgtggaggacaacctctacaccatcctcaagaaga 3102987

                                                                           
Query: 79      aggtgagcagggtgtacgcggcgccgccggaggagaggaagaagcgcatctacaacaccg 138
               |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
Sbjct: 3102986 aggtgagcagggtgtacgcggccccgccggaggagaggaagaagcgcatctacagcacgg 3102927

                                              
Query: 139     cgccctccaagttcaccaccatcgaccaggt 169
               |||||||||| ||||||||||| || |||||
Sbjct: 3102926 cgccctccaaattcaccaccattgatcaggt 3102896



 Score =  212 bits (107), Expect = 9e-52
 Identities = 173/195 (88%)
 Strand = Plus / Minus

                                                                           
Query: 245     tagcgggctggggttcaggcttgtgaggatggggttcgaggacatgtacctgggcagccc 304
               ||||||||||||||||||| | ||||||||||||| |||||||||||||||| |||||||
Sbjct: 3102406 tagcgggctggggttcagggtggtgaggatggggtacgaggacatgtacctgtgcagccc 3102347

                                                                           
Query: 305     aggaggaatgtacgacaagttcggcaacgactacttcctctgcaccgggccggcgtccat 364
                || |  ||||||   ||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 3102346 gggggagatgtacaggaagttcggcaaggactacttcctgtgcaccgggacggcgtccat 3102287

                                                                           
Query: 365     cctcgtgcccgtcgtcgtcggccccggcgaggagtggaggggggcgcaggtcatcgagca 424
                || ||||| || ||||||  |||||||||||||||||||| ||||||||||||||||||
Sbjct: 3102286 gctggtgccggtggtcgtcaaccccggcgaggagtggagggcggcgcaggtcatcgagca 3102227

                              
Query: 425     cgacaacttgtaact 439
               ||||||| |||||||
Sbjct: 3102226 cgacaacctgtaact 3102212



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 107      ggaggagaggaagaagcgca 126
                ||||||||||||||||||||
Sbjct: 13764925 ggaggagaggaagaagcgca 13764944
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>gb|AC099401.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1134F05,
             complete sequence
          Length = 101799

 Score =  220 bits (111), Expect = 4e-54
 Identities = 141/151 (93%)
 Strand = Plus / Minus

                                                                         
Query: 19    aggagccccggcagggcgcctggaccgtggaggagaacctctacaccatcctcaagaaga 78
             |||||||||||||||| |  |||||||||||||| |||||||||||||||||||||||||
Sbjct: 26059 aggagccccggcagggggtgtggaccgtggaggacaacctctacaccatcctcaagaaga 26000

                                                                         
Query: 79    aggtgagcagggtgtacgcggcgccgccggaggagaggaagaagcgcatctacaacaccg 138
             |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
Sbjct: 25999 aggtgagcagggtgtacgcggccccgccggaggagaggaagaagcgcatctacagcacgg 25940

                                            
Query: 139   cgccctccaagttcaccaccatcgaccaggt 169
             |||||||||| ||||||||||| || |||||
Sbjct: 25939 cgccctccaaattcaccaccattgatcaggt 25909



 Score =  212 bits (107), Expect = 9e-52
 Identities = 173/195 (88%)
 Strand = Plus / Minus

                                                                         
Query: 245   tagcgggctggggttcaggcttgtgaggatggggttcgaggacatgtacctgggcagccc 304
             ||||||||||||||||||| | ||||||||||||| |||||||||||||||| |||||||
Sbjct: 25419 tagcgggctggggttcagggtggtgaggatggggtacgaggacatgtacctgtgcagccc 25360

                                                                         
Query: 305   aggaggaatgtacgacaagttcggcaacgactacttcctctgcaccgggccggcgtccat 364
              || |  ||||||   ||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 25359 gggggagatgtacaggaagttcggcaaggactacttcctgtgcaccgggacggcgtccat 25300

                                                                         
Query: 365   cctcgtgcccgtcgtcgtcggccccggcgaggagtggaggggggcgcaggtcatcgagca 424
              || ||||| || ||||||  |||||||||||||||||||| ||||||||||||||||||
Sbjct: 25299 gctggtgccggtggtcgtcaaccccggcgaggagtggagggcggcgcaggtcatcgagca 25240

                            
Query: 425   cgacaacttgtaact 439
             ||||||| |||||||
Sbjct: 25239 cgacaacctgtaact 25225
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  220 bits (111), Expect = 4e-54
 Identities = 141/151 (93%)
 Strand = Plus / Minus

                                                                           
Query: 19      aggagccccggcagggcgcctggaccgtggaggagaacctctacaccatcctcaagaaga 78
               |||||||||||||||| |  |||||||||||||| |||||||||||||||||||||||||
Sbjct: 3103157 aggagccccggcagggggtgtggaccgtggaggacaacctctacaccatcctcaagaaga 3103098

                                                                           
Query: 79      aggtgagcagggtgtacgcggcgccgccggaggagaggaagaagcgcatctacaacaccg 138
               |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
Sbjct: 3103097 aggtgagcagggtgtacgcggccccgccggaggagaggaagaagcgcatctacagcacgg 3103038

                                              
Query: 139     cgccctccaagttcaccaccatcgaccaggt 169
               |||||||||| ||||||||||| || |||||
Sbjct: 3103037 cgccctccaaattcaccaccattgatcaggt 3103007



 Score =  212 bits (107), Expect = 9e-52
 Identities = 173/195 (88%)
 Strand = Plus / Minus

                                                                           
Query: 245     tagcgggctggggttcaggcttgtgaggatggggttcgaggacatgtacctgggcagccc 304
               ||||||||||||||||||| | ||||||||||||| |||||||||||||||| |||||||
Sbjct: 3102517 tagcgggctggggttcagggtggtgaggatggggtacgaggacatgtacctgtgcagccc 3102458

                                                                           
Query: 305     aggaggaatgtacgacaagttcggcaacgactacttcctctgcaccgggccggcgtccat 364
                || |  ||||||   ||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 3102457 gggggagatgtacaggaagttcggcaaggactacttcctgtgcaccgggacggcgtccat 3102398

                                                                           
Query: 365     cctcgtgcccgtcgtcgtcggccccggcgaggagtggaggggggcgcaggtcatcgagca 424
                || ||||| || ||||||  |||||||||||||||||||| ||||||||||||||||||
Sbjct: 3102397 gctggtgccggtggtcgtcaaccccggcgaggagtggagggcggcgcaggtcatcgagca 3102338

                              
Query: 425     cgacaacttgtaact 439
               ||||||| |||||||
Sbjct: 3102337 cgacaacctgtaact 3102323



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 107      ggaggagaggaagaagcgca 126
                ||||||||||||||||||||
Sbjct: 13759900 ggaggagaggaagaagcgca 13759919
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>ref|XM_470256.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1200

 Score =  218 bits (110), Expect = 1e-53
 Identities = 134/142 (94%)
 Strand = Plus / Plus

                                                                       
Query: 19  aggagccccggcagggcgcctggaccgtggaggagaacctctacaccatcctcaagaaga 78
           |||||||||||||||| |  |||||||||||||| |||||||||||||||||||||||||
Sbjct: 857 aggagccccggcagggggtgtggaccgtggaggacaacctctacaccatcctcaagaaga 916

                                                                       
Query: 79  aggtgagcagggtgtacgcggcgccgccggaggagaggaagaagcgcatctacaacaccg 138
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
Sbjct: 917 aggtgagcagggtgtacgcggccccgccggaggagaggaagaagcgcatctacagcacgg 976

                                 
Query: 139 cgccctccaagttcaccaccat 160
           |||||||||| |||||||||||
Sbjct: 977 cgccctccaaattcaccaccat 998



 Score =  208 bits (105), Expect = 1e-50
 Identities = 171/193 (88%)
 Strand = Plus / Plus

                                                                        
Query: 245  tagcgggctggggttcaggcttgtgaggatggggttcgaggacatgtacctgggcagccc 304
            ||||||||||||||||||| | ||||||||||||| |||||||||||||||| |||||||
Sbjct: 1008 tagcgggctggggttcagggtggtgaggatggggtacgaggacatgtacctgtgcagccc 1067

                                                                        
Query: 305  aggaggaatgtacgacaagttcggcaacgactacttcctctgcaccgggccggcgtccat 364
             || |  ||||||   ||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 1068 gggggagatgtacaggaagttcggcaaggactacttcctgtgcaccgggacggcgtccat 1127

                                                                        
Query: 365  cctcgtgcccgtcgtcgtcggccccggcgaggagtggaggggggcgcaggtcatcgagca 424
             || ||||| || ||||||  |||||||||||||||||||| ||||||||||||||||||
Sbjct: 1128 gctggtgccggtggtcgtcaaccccggcgaggagtggagggcggcgcaggtcatcgagca 1187

                         
Query: 425  cgacaacttgtaa 437
            ||||||| |||||
Sbjct: 1188 cgacaacctgtaa 1200
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>dbj|AK066591.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073D03, full
           insert sequence
          Length = 1341

 Score =  218 bits (110), Expect = 1e-53
 Identities = 134/142 (94%)
 Strand = Plus / Plus

                                                                       
Query: 19  aggagccccggcagggcgcctggaccgtggaggagaacctctacaccatcctcaagaaga 78
           |||||||||||||||| |  |||||||||||||| |||||||||||||||||||||||||
Sbjct: 782 aggagccccggcagggggtgtggaccgtggaggacaacctctacaccatcctcaagaaga 841

                                                                       
Query: 79  aggtgagcagggtgtacgcggcgccgccggaggagaggaagaagcgcatctacaacaccg 138
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
Sbjct: 842 aggtgagcagggtgtacgcggccccgccggaggagaggaagaagcgcatctacagcacgg 901

                                 
Query: 139 cgccctccaagttcaccaccat 160
           |||||||||| |||||||||||
Sbjct: 902 cgccctccaaattcaccaccat 923



 Score =  212 bits (107), Expect = 9e-52
 Identities = 173/195 (88%)
 Strand = Plus / Plus

                                                                        
Query: 245  tagcgggctggggttcaggcttgtgaggatggggttcgaggacatgtacctgggcagccc 304
            ||||||||||||||||||| | ||||||||||||| |||||||||||||||| |||||||
Sbjct: 933  tagcgggctggggttcagggtggtgaggatggggtacgaggacatgtacctgtgcagccc 992

                                                                        
Query: 305  aggaggaatgtacgacaagttcggcaacgactacttcctctgcaccgggccggcgtccat 364
             || |  ||||||   ||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 993  gggggagatgtacaggaagttcggcaaggactacttcctgtgcaccgggacggcgtccat 1052

                                                                        
Query: 365  cctcgtgcccgtcgtcgtcggccccggcgaggagtggaggggggcgcaggtcatcgagca 424
             || ||||| || ||||||  |||||||||||||||||||| ||||||||||||||||||
Sbjct: 1053 gctggtgccggtggtcgtcaaccccggcgaggagtggagggcggcgcaggtcatcgagca 1112

                           
Query: 425  cgacaacttgtaact 439
            ||||||| |||||||
Sbjct: 1113 cgacaacctgtaact 1127
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>gb|AY112221.1| Zea mays CL58622_1 mRNA sequence
          Length = 883

 Score =  198 bits (100), Expect = 1e-47
 Identities = 172/196 (87%)
 Strand = Plus / Minus

                                                                       
Query: 240 cagtctagcgggctggggttcaggcttgtgaggatggggttcgaggacatgtacctgggc 299
           |||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||  ||
Sbjct: 332 cagtatagcgggctcgggttcaggctggtgaggatggggttcgaggacatgtacctctgc 273

                                                                       
Query: 300 agcccaggaggaatgtacgacaagttcggcaacgactacttcctctgcaccgggccggcg 359
           ||||| ||||| ||||||| |||||||||||| |||||||| || ||||| |||  ||||
Sbjct: 272 agcccgggaggcatgtacgccaagttcggcaaggactactttctgtgcacggggatggcg 213

                                                                       
Query: 360 tccatcctcgtgcccgtcgtcgtcggccccggcgaggagtggaggggggcgcaggtcatc 419
           |||||  | |||||||| ||||||  ||||||||||||||||| || |||||||||||| 
Sbjct: 212 tccatgttggtgcccgttgtcgtcaaccccggcgaggagtggaaggcggcgcaggtcata 153

                           
Query: 420 gagcacgacaacttgt 435
           ||||| ||||||||||
Sbjct: 152 gagcatgacaacttgt 137



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                
Query: 99  gcgccgccggaggagaggaagaagcgcatctacaacaccgcgccctccaagtt 151
           ||||||  ||||||||||||||||||| |||||| ||||||||| ||||||||
Sbjct: 398 gcgccgnnggaggagaggaagaagcgcgtctacagcaccgcgccgtccaagtt 346
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>gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
            OSJNBa0074L11, complete sequence
          Length = 180703

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 501  atgaatcttgtaaccacccat 521
            |||||||||||||||||||||
Sbjct: 6602 atgaatcttgtaaccacccat 6582
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>gb|AF333066.1| Anguillid herpesvirus polymerase gene, partial cds
          Length = 463

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 51  gagaacctctacaccatcctc 71
           |||||||||||||||||||||
Sbjct: 152 gagaacctctacaccatcctc 172
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 501      atgaatcttgtaaccacccat 521
                |||||||||||||||||||||
Sbjct: 21654549 atgaatcttgtaaccacccat 21654529
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 374     cgtcgtcgtcggccccggcga 394
               |||||||||||||||||||||
Sbjct: 1435696 cgtcgtcgtcggccccggcga 1435716
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 501      atgaatcttgtaaccacccat 521
                |||||||||||||||||||||
Sbjct: 21964748 atgaatcttgtaaccacccat 21964728
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>ref|XM_468503.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2037

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 374 cgtcgtcgtcggccccggcg 393
           ||||||||||||||||||||
Sbjct: 232 cgtcgtcgtcggccccggcg 213
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>ref|XM_463635.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1119

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 103  cgccggaggagaggaagaag 122
            ||||||||||||||||||||
Sbjct: 1028 cgccggaggagaggaagaag 1047
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>ref|XM_463632.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1110

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 99   gcgccgccggaggagaggaagaag 122
            ||||||||||||| ||||||||||
Sbjct: 1006 gcgccgccggaggggaggaagaag 1029
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>gb|AY208917.2| Pseudomonas sp. ND6 plasmid pND6-1, complete sequence
          Length = 101858

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   tggatgaatgatcgtcgtca 201
             ||||||||||||||||||||
Sbjct: 45110 tggatgaatgatcgtcgtca 45091
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 368     cgtgcccgtcgtcgtcggcc 387
               ||||||||||||||||||||
Sbjct: 4220951 cgtgcccgtcgtcgtcggcc 4220932
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>ref|XM_581852.2| PREDICTED: Bos taurus similar to Epsin-3 (EPS-15 interacting
           protein 3) (LOC538660), mRNA
          Length = 1908

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 50  ggagaacctctacaccatcc 69
           ||||||||||||||||||||
Sbjct: 291 ggagaacctctacaccatcc 310
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>emb|X61927.1|PCPPC1 P.cepacia plasmid PPC1 DNA
          Length = 1641

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 407 ggcgcaggtcatcgagcacg 426
           ||||||||||||||||||||
Sbjct: 272 ggcgcaggtcatcgagcacg 291
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>gb|BC112775.1| Bos taurus similar to Epsin-3 (EPS-15 interacting protein 3), mRNA
           (cDNA clone MGC:137304 IMAGE:8179488), complete cds
          Length = 2598

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 50  ggagaacctctacaccatcc 69
           ||||||||||||||||||||
Sbjct: 671 ggagaacctctacaccatcc 690
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>emb|AL645803.19| Mouse DNA sequence from clone RP23-119N24 on chromosome 11 Contains the
             5' end of the Ddc gene for dopa decarboxylase, a novel
             gene and the 3' end of the Grb10 gene for growth factor
             receptor bound protein 10, complete sequence
          Length = 128744

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 473   aaatcatgtacattctcaaa 492
             ||||||||||||||||||||
Sbjct: 30971 aaatcatgtacattctcaaa 30952
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>emb|BX842584.1| Mycobacterium tuberculosis H37Rv complete genome; segment 13/13
          Length = 244800

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 368   cgtgcccgtcgtcgtcggcc 387
             ||||||||||||||||||||
Sbjct: 61906 cgtgcccgtcgtcgtcggcc 61887
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>emb|BX248347.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             14/14
          Length = 278492

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 368   cgtgcccgtcgtcgtcggcc 387
             ||||||||||||||||||||
Sbjct: 97933 cgtgcccgtcgtcgtcggcc 97914
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>dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:OJ1485_B09
          Length = 66599

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 103  cgccggaggagaggaagaag 122
            ||||||||||||||||||||
Sbjct: 5414 cgccggaggagaggaagaag 5433
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>gb|AC107619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0048D11, from chromosome 3, complete sequence
          Length = 158911

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   ggaggagaggaagaagcgca 126
             ||||||||||||||||||||
Sbjct: 41453 ggaggagaggaagaagcgca 41472
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>gb|AC008860.7| Homo sapiens chromosome 5 clone CTD-2185A1, complete sequence
          Length = 105885

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 60    tacaccatcctcaagaagaaggtgagca 87
             ||||||||||||||||| ||| ||||||
Sbjct: 77873 tacaccatcctcaagaaaaagttgagca 77846
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>gb|AC008577.7| Homo sapiens chromosome 5 clone CTC-558D17, complete sequence
          Length = 77686

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   tgtgaggatggggttcgagg 285
             ||||||||||||||||||||
Sbjct: 40370 tgtgaggatggggttcgagg 40351
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>gb|AC011208.5|AC011208 Homo sapiens chromosome 18, clone RP11-131K21, complete sequence
          Length = 181602

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   gcgggctggggttcaggctt 266
             ||||||||||||||||||||
Sbjct: 89185 gcgggctggggttcaggctt 89204
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 332     cgactacttcctctgcaccg 351
               ||||||||||||||||||||
Sbjct: 4200807 cgactacttcctctgcaccg 4200788
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 103      cgccggaggagaggaagaag 122
                ||||||||||||||||||||
Sbjct: 22977237 cgccggaggagaggaagaag 22977256
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 98       ggcgccgccggaggagagga 117
                ||||||||||||||||||||
Sbjct: 26217579 ggcgccgccggaggagagga 26217560
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 374      cgtcgtcgtcggccccggcg 393
                ||||||||||||||||||||
Sbjct: 35572592 cgtcgtcgtcggccccggcg 35572573
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 103      cgccggaggagaggaagaag 122
                ||||||||||||||||||||
Sbjct: 40206462 cgccggaggagaggaagaag 40206481



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 99       gcgccgccggaggagaggaagaag 122
                ||||||||||||| ||||||||||
Sbjct: 40196846 gcgccgccggaggggaggaagaag 40196869
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>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0678F11
          Length = 154292

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 103    cgccggaggagaggaagaag 122
              ||||||||||||||||||||
Sbjct: 149546 cgccggaggagaggaagaag 149565



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 99     gcgccgccggaggagaggaagaag 122
              ||||||||||||| ||||||||||
Sbjct: 139930 gcgccgccggaggggaggaagaag 139953
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>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1793G04
          Length = 156714

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   cgccggaggagaggaagaag 122
             ||||||||||||||||||||
Sbjct: 72240 cgccggaggagaggaagaag 72259



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 99    gcgccgccggaggagaggaagaag 122
             ||||||||||||| ||||||||||
Sbjct: 62624 gcgccgccggaggggaggaagaag 62647
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 89     ggtgtacgcggcgccgccgg 108
              ||||||||||||||||||||
Sbjct: 316870 ggtgtacgcggcgccgccgg 316851
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>gb|AC112204.2| Homo sapiens chromosome 5 clone RP11-79C6, complete sequence
          Length = 165304

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 60     tacaccatcctcaagaagaaggtgagca 87
              ||||||||||||||||| ||| ||||||
Sbjct: 112749 tacaccatcctcaagaaaaagttgagca 112776
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>dbj|AP004776.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0452F04
          Length = 171421

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 374   cgtcgtcgtcggccccggcg 393
             ||||||||||||||||||||
Sbjct: 88984 cgtcgtcgtcggccccggcg 88965
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>gb|AE004994.1| Halobacterium sp. NRC-1 section 25 of 170 of the complete genome
          Length = 15274

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 379  tcgtcggccccggcgaggag 398
            ||||||||||||||||||||
Sbjct: 7341 tcgtcggccccggcgaggag 7360
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>ref|XM_561331.1| Anopheles gambiae str. PEST ENSANGP00000025558
           (ENSANGG00000023121), partial mRNA
          Length = 1167

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 413 ggtcatcgagcacgacaact 432
           ||||||||||||||||||||
Sbjct: 642 ggtcatcgagcacgacaact 661
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>dbj|AK099149.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063C05, full
           insert sequence
          Length = 934

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 103 cgccggaggagaggaagaag 122
           ||||||||||||||||||||
Sbjct: 95  cgccggaggagaggaagaag 76
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>dbj|AK099125.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044P12, full
           insert sequence
          Length = 927

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 103 cgccggaggagaggaagaag 122
           ||||||||||||||||||||
Sbjct: 92  cgccggaggagaggaagaag 73
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>dbj|AK071688.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113H16, full
            insert sequence
          Length = 1334

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 103  cgccggaggagaggaagaag 122
            ||||||||||||||||||||
Sbjct: 1056 cgccggaggagaggaagaag 1075
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>dbj|AK069159.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007N07, full
           insert sequence
          Length = 2037

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 374 cgtcgtcgtcggccccggcg 393
           ||||||||||||||||||||
Sbjct: 232 cgtcgtcgtcggccccggcg 213
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>dbj|AK060332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-B07, full
           insert sequence
          Length = 952

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 103 cgccggaggagaggaagaag 122
           ||||||||||||||||||||
Sbjct: 95  cgccggaggagaggaagaag 76
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>dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0519E12
          Length = 152448

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 98     ggcgccgccggaggagagga 117
              ||||||||||||||||||||
Sbjct: 109437 ggcgccgccggaggagagga 109418
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>gb|AY859695.1| Mycobacterium conceptionae CIP 108544 RNA polymerase subunit B (rpoB)
            gene, complete cds
          Length = 3934

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 85   gcagggtgtacgcggcgccg 104
            ||||||||||||||||||||
Sbjct: 3444 gcagggtgtacgcggcgccg 3425
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>gb|AC006924.3|AC006924 Homo sapiens, clone hRPK.32_A_1, complete sequence
          Length = 165633

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 525    gatctgtatgtacacatgga 544
              ||||||||||||||||||||
Sbjct: 109670 gatctgtatgtacacatgga 109651
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 103     cgccggaggagaggaagaagcgca 126
               |||||||||| |||||||||||||
Sbjct: 1483534 cgccggaggacaggaagaagcgca 1483557
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 103      cgccggaggagaggaagaag 122
                ||||||||||||||||||||
Sbjct: 22905428 cgccggaggagaggaagaag 22905447
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>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 155568

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   cgccggaggagaggaagaag 122
             ||||||||||||||||||||
Sbjct: 86514 cgccggaggagaggaagaag 86533
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>emb|AL606654.3|OSJN00100 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0028M18,
             complete sequence
          Length = 132854

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 332   cgactacttcctctgcaccg 351
             ||||||||||||||||||||
Sbjct: 43871 cgactacttcctctgcaccg 43852
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>gb|AD000012.1|MSGY126 Mycobacterium tuberculosis sequence from clone y126
          Length = 37164

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 368   cgtgcccgtcgtcgtcggcc 387
             ||||||||||||||||||||
Sbjct: 15287 cgtgcccgtcgtcgtcggcc 15268


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,287,743
Number of Sequences: 3902068
Number of extensions: 4287743
Number of successful extensions: 99454
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98427
Number of HSP's gapped (non-prelim): 1022
length of query: 545
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 522
effective length of database: 17,143,297,704
effective search space: 8948801401488
effective search space used: 8948801401488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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