>CUTL1_CANFA (P39881) Homeobox protein cut-like 1 (CCAAT displacement protein)|
            (CDP) (Homeobox protein Clox) (Clox-1) (Fragment)
          Length = 975

 Score = 25.8 bits (55), Expect(2) = 2.8
 Identities = 23/60 (38%), Positives = 24/60 (40%), Gaps = 17/60 (28%)
 Frame = -2

Query: 182  REMRTRXPWP-PGRHAREGDA-GLDVATHAG---------------RRRQPRRLHAREGG 54
            R  R R P P PGR    G A G   A  A                RRR+ RR HAR GG
Sbjct: 827  RSRRPRGPGPGPGRRGGGGPAPGAPAAPAAAARGPSRRPGARAKPRRRRRRRRRHARGGG 886



 Score = 21.9 bits (45), Expect(2) = 2.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 69  RTGGRRCPLPPSRWSHCRSR 10
           R GGRR    P+R   CR+R
Sbjct: 883 RGGGRRYLSRPARGGPCRAR 902

>PRP5_USTMA (Q4PFD9) Pre-mRNA-processing ATP-dependent RNA helicase PRP5 (EC|
           3.6.1.-)
          Length = 1156

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 60  GRRCPLPPSRWSHC 19
           GR CP P ++WSHC
Sbjct: 468 GRDCPKPLTKWSHC 481

>YAMP_RHOCA (P14172) Hypothetical 28.2 kDa protein in ampR 5'region|
          Length = 260

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +1

Query: 97  PACVATSRPASPSRAWRPG--GHGLRVRIS 180
           P    +S PAS SR+WRP   G GL  R S
Sbjct: 228 PGSRNSSAPASASRSWRPARVGPGLTARTS 257


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,094,614
Number of Sequences: 219361
Number of extensions: 677079
Number of successful extensions: 2245
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2245
length of database: 80,573,946
effective HSP length: 61
effective length of database: 67,192,925
effective search space used: 1612630200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)