ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal23l22 |
|---|---|
| Clone Library Name | barley_pub |
>VP40_HCMVA (P16753) Capsid protein P40 [Contains: Assemblin (Protease) (EC| 3.4.21.97); Capsid assembly protein; Gene UL80 protein; Gene UL80.5 protein; C-terminal peptide] Length = 708 Score = 34.7 bits (78), Expect = 0.16 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 4/41 (9%) Frame = +1 Query: 121 WGRRFQKWPSP*PQ--GPSVPAPAYFRRR--PGTISLPGGG 231 WGRR++ PS P P P+PAY+RRR PG + P G Sbjct: 444 WGRRYEPAPSLHPSYPVPPPPSPAYYRRRDSPGGMDEPPSG 484
>SO4A1_HUMAN (Q96BD0) Solute carrier organic anion transporter family member 4A1| (Solute carrier family 21 member 12) (Sodium-independent organic anion transporter E) (Organic anion-transporting polypeptide E) (OATP-E) (Colon organic anion transporter) (O Length = 722 Score = 30.8 bits (68), Expect = 2.3 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%) Frame = -1 Query: 394 LLCLPEESRQTL--AFTTFNPKFLRALISTAAGEAA 293 LLCL + TL +TF+PKFL + S +A EAA Sbjct: 387 LLCLAGATEATLITGMSTFSPKFLESQFSLSASEAA 422
>SO4A1_RAT (Q99N01) Solute carrier organic anion transporter family member 4A1| (Solute carrier family 21 member 12) (Sodium-independent organic anion transporter E) (Organic anion-transporting polypeptide E) (OATP-E) Length = 723 Score = 30.0 bits (66), Expect = 3.9 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%) Frame = -1 Query: 394 LLCLPEESRQTL--AFTTFNPKFLRALISTAAGEAA 293 LLCL + TL +TF PKF A S +A EAA Sbjct: 389 LLCLAGATEATLIAGMSTFGPKFFEAQFSLSASEAA 424
>SO4A1_MOUSE (Q8K078) Solute carrier organic anion transporter family member 4A1| (Solute carrier family 21 member 12) (Sodium-independent organic anion transporter E) (Organic anion-transporting polypeptide E) (OATP-E) Length = 723 Score = 30.0 bits (66), Expect = 3.9 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%) Frame = -1 Query: 394 LLCLPEESRQTL--AFTTFNPKFLRALISTAAGEAA 293 LLCL + TL +TF PKF A S +A EAA Sbjct: 389 LLCLAGATEATLIAGMSTFGPKFFEAQFSLSASEAA 424
>HCN4_MOUSE (O70507) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Brain cyclic nucleotide gated channel 3) (BCNG-3) Length = 1186 Score = 29.6 bits (65), Expect = 5.1 Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 13/84 (15%) Frame = +1 Query: 16 SHQRLLLCSTISPPPP-----------TPRFI*QD--LISIFARFLAEWGRRFQKWPSP* 156 SH LLL SPPPP TP + QD LIS L + G + + SP Sbjct: 1033 SHGSLLLPPASSPPPPQVPQRRGTPPLTPGRLTQDLKLISASQPALPQDGAQTLRRASPH 1092 Query: 157 PQGPSVPAPAYFRRRPGTISLPGG 228 G SV A + + R G GG Sbjct: 1093 SSGESVAAFSLYPRAGGGSGSSGG 1116
>VGLL_HCMV6 (Q68672) Glycoprotein L precursor| Length = 278 Score = 29.6 bits (65), Expect = 5.1 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Frame = -1 Query: 490 YSSMLLIIVSLTASNNSGSSILR--PVDDFVIANLLCLPEESRQTLAFTTFNPKFLRALI 317 Y S L +V++T N S ++R PV AN + L + TLA NP LRAL+ Sbjct: 65 YESWLRPLVNVTGRNGPLSQLIRYRPVTPEA-ANSVLLDDAFLDTLALLYNNPDQLRALL 123 Query: 316 STAAGEAA 293 + + + A Sbjct: 124 TLLSSDTA 131
>EP400_HUMAN (Q96L91) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa| SWI2/SNF2-related protein) (Domino homolog) (hDomino) (CAG repeat protein 32) (Trinucleotide repeat-containing gene 12 protein) Length = 3160 Score = 28.9 bits (63), Expect = 8.7 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +1 Query: 160 QGPSVPAPAYFRRRPGTISLPGGG 231 QGP +P P F R PG + LPG G Sbjct: 284 QGPPLPRPLGFERTPGVL-LPGAG 306
>VGLL_HCMVP (Q68666) Glycoprotein L precursor| Length = 278 Score = 28.9 bits (63), Expect = 8.7 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Frame = -1 Query: 490 YSSMLLIIVSLTASNNSGSSILR--PVDDFVIANLLCLPEESRQTLAFTTFNPKFLRALI 317 Y S L +V++T + S ++R PV AN + L E TLA NP LRAL+ Sbjct: 65 YESWLRPLVNVTGRDGPLSQLIRYRPVTPEA-ANSVLLDEAFLDTLALLYNNPDQLRALL 123 Query: 316 STAAGEAA 293 + + + A Sbjct: 124 TLLSSDTA 131
>VGLL_HCMV8 (Q68674) Glycoprotein L precursor| Length = 278 Score = 28.9 bits (63), Expect = 8.7 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Frame = -1 Query: 490 YSSMLLIIVSLTASNNSGSSILR--PVDDFVIANLLCLPEESRQTLAFTTFNPKFLRALI 317 Y S L +V++T + S ++R PV AN + L E TLA NP LRAL+ Sbjct: 65 YESWLRPLVNVTGRDGPLSQLIRYRPVTPEA-ANSVLLDEAFLDTLALLYNNPDQLRALL 123 Query: 316 STAAGEAA 293 + + + A Sbjct: 124 TLLSSDTA 131
>VGLL_HCMV7 (Q68673) Glycoprotein L precursor| Length = 278 Score = 28.9 bits (63), Expect = 8.7 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Frame = -1 Query: 490 YSSMLLIIVSLTASNNSGSSILR--PVDDFVIANLLCLPEESRQTLAFTTFNPKFLRALI 317 Y S L +V++T + S ++R PV AN + L E TLA NP LRAL+ Sbjct: 65 YESWLRPLVNVTGRDGPLSQLIRYRPVTPEA-ANSVLLDEAFLDTLALLYNNPDQLRALL 123 Query: 316 STAAGEAA 293 + + + A Sbjct: 124 TLLSSDTA 131
>VGLL_HCMV5 (Q68671) Glycoprotein L precursor| Length = 278 Score = 28.9 bits (63), Expect = 8.7 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Frame = -1 Query: 490 YSSMLLIIVSLTASNNSGSSILR--PVDDFVIANLLCLPEESRQTLAFTTFNPKFLRALI 317 Y S L +V++T + S ++R PV AN + L E TLA NP LRAL+ Sbjct: 65 YESWLRPLVNVTGRDGPLSQLIRYRPVTPEA-ANSVLLDEAFLDTLALLYNNPDQLRALL 123 Query: 316 STAAGEAA 293 + + + A Sbjct: 124 TLLSSDTA 131
>VGLL_HCMV4 (Q68670) Glycoprotein L precursor| Length = 278 Score = 28.9 bits (63), Expect = 8.7 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Frame = -1 Query: 490 YSSMLLIIVSLTASNNSGSSILR--PVDDFVIANLLCLPEESRQTLAFTTFNPKFLRALI 317 Y S L +V++T + S ++R PV AN + L E TLA NP LRAL+ Sbjct: 65 YESWLRPLVNVTGRDGPLSQLIRYRPVTPEA-ANSVLLDEAFLDTLALLYNNPDQLRALL 123 Query: 316 STAAGEAA 293 + + + A Sbjct: 124 TLLSSDTA 131
>VGLL_HCMV1 (Q68667) Glycoprotein L precursor| Length = 278 Score = 28.9 bits (63), Expect = 8.7 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Frame = -1 Query: 490 YSSMLLIIVSLTASNNSGSSILR--PVDDFVIANLLCLPEESRQTLAFTTFNPKFLRALI 317 Y S L +V++T + S ++R PV AN + L E TLA NP LRAL+ Sbjct: 65 YESWLRPLVNVTGRDGPLSQLIRYRPVTPEA-ANSVLLDEAFLDTLALLYNNPDQLRALL 123 Query: 316 STAAGEAA 293 + + + A Sbjct: 124 TLLSSDTA 131 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,396,855 Number of Sequences: 219361 Number of extensions: 1359007 Number of successful extensions: 5128 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4558 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5113 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3869946934 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
