ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baal23j24 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_191897.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1698 Score = 442 bits (223), Expect = e-121 Identities = 397/455 (87%) Strand = Plus / Plus Query: 192 gatcacaagtgggtgccgattggatggtcaaggattgccgagctgagccagagggttcag 251 |||||||| |||||||| || |||||||| |||||||| || ||| ||||||||||||| Sbjct: 373 gatcacaaatgggtgcctatcggatggtctaggattgctgaactggtccagagggttcag 432 Query: 252 tcagatgctagctgggagaatgaacatgtgccgattagcgacagtgaggatgattacact 311 |||||||| |||||||| | ||| | | | ||| | |||||||||||||||||||||| Sbjct: 433 tcagatgccagctgggatagtgagccggcggagatgaccgacagtgaggatgattacact 492 Query: 312 gtagccgatgttgcggctccgtactggctgcgtcctggtgggcctacatggtggttccat 371 ||||| |||||||| ||||| ||||||| |||||| | || ||||||||||||| |||| Sbjct: 493 gtagctgatgttgcagctccatactggcagcgtccggtaggacctacatggtggtgccat 552 Query: 372 gtcacagcaggccatccttccgttgatgcatggttgagtagtgctcactggatgcatcca 431 ||||| ||||||||||| || ||||| |||||| ||| ||||||||||||||||||||| Sbjct: 553 gtcactgcaggccatccctcagttgacgcatggctgaatagtgctcactggatgcatccg 612 Query: 432 gctatcagaactgcactgagagatgaaagccggctgataagcgatcggatgaagtacctt 491 ||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 613 gctataagaactgcattgagagatgaaagccggctgataagtgatcggatgaagtacctt 672 Query: 492 ctctatgaggttccagttagagttgcaggaggactgttatttgagcttcttggtcaatca 551 ||||||||||| |||||||||||||| || |||||| ||||||| ||||||||||||||| Sbjct: 673 ctctatgaggtcccagttagagttgctgggggactgctatttgaacttcttggtcaatca 732 Query: 552 gtcggggatccaaatcatgaagaggaagacataccaattgtactcagatcgtggcaggcg 611 ||||| |||||||| | |||||||||||||||||| ||||| || | || ||||| || Sbjct: 733 gtcggagatccaaaccgtgaagaggaagacatacccattgtgcttcggtcttggcaagca 792 Query: 612 cagaactttcttttaactgcaatgcatgtgaaagg 646 |||||||||||| | || ||||||||||| ||||| Sbjct: 793 cagaactttcttgtgaccgcaatgcatgtcaaagg 827
>dbj|AK065234.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002H17, full insert sequence Length = 2296 Score = 442 bits (223), Expect = e-121 Identities = 397/455 (87%) Strand = Plus / Plus Query: 192 gatcacaagtgggtgccgattggatggtcaaggattgccgagctgagccagagggttcag 251 |||||||| |||||||| || |||||||| |||||||| || ||| ||||||||||||| Sbjct: 711 gatcacaaatgggtgcctatcggatggtctaggattgctgaactggtccagagggttcag 770 Query: 252 tcagatgctagctgggagaatgaacatgtgccgattagcgacagtgaggatgattacact 311 |||||||| |||||||| | ||| | | | ||| | |||||||||||||||||||||| Sbjct: 771 tcagatgccagctgggatagtgagccggcggagatgaccgacagtgaggatgattacact 830 Query: 312 gtagccgatgttgcggctccgtactggctgcgtcctggtgggcctacatggtggttccat 371 ||||| |||||||| ||||| ||||||| |||||| | || ||||||||||||| |||| Sbjct: 831 gtagctgatgttgcagctccatactggcagcgtccggtaggacctacatggtggtgccat 890 Query: 372 gtcacagcaggccatccttccgttgatgcatggttgagtagtgctcactggatgcatcca 431 ||||| ||||||||||| || ||||| |||||| ||| ||||||||||||||||||||| Sbjct: 891 gtcactgcaggccatccctcagttgacgcatggctgaatagtgctcactggatgcatccg 950 Query: 432 gctatcagaactgcactgagagatgaaagccggctgataagcgatcggatgaagtacctt 491 ||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 951 gctataagaactgcattgagagatgaaagccggctgataagtgatcggatgaagtacctt 1010 Query: 492 ctctatgaggttccagttagagttgcaggaggactgttatttgagcttcttggtcaatca 551 ||||||||||| |||||||||||||| || |||||| ||||||| ||||||||||||||| Sbjct: 1011 ctctatgaggtcccagttagagttgctgggggactgctatttgaacttcttggtcaatca 1070 Query: 552 gtcggggatccaaatcatgaagaggaagacataccaattgtactcagatcgtggcaggcg 611 ||||| |||||||| | |||||||||||||||||| ||||| || | || ||||| || Sbjct: 1071 gtcggagatccaaaccgtgaagaggaagacatacccattgtgcttcggtcttggcaagca 1130 Query: 612 cagaactttcttttaactgcaatgcatgtgaaagg 646 |||||||||||| | || ||||||||||| ||||| Sbjct: 1131 cagaactttcttgtgaccgcaatgcatgtcaaagg 1165
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 317 bits (160), Expect = 3e-83 Identities = 274/312 (87%) Strand = Plus / Plus Query: 192 gatcacaagtgggtgccgattggatggtcaaggattgccgagctgagccagagggttcag 251 |||||||| |||||||| || |||||||| |||||||| || ||| ||||||||||||| Sbjct: 27118311 gatcacaaatgggtgcctatcggatggtctaggattgctgaactggtccagagggttcag 27118370 Query: 252 tcagatgctagctgggagaatgaacatgtgccgattagcgacagtgaggatgattacact 311 |||||||| |||||||| | ||| | | | ||| | |||||||||||||||||||||| Sbjct: 27118371 tcagatgccagctgggatagtgagccggcggagatgaccgacagtgaggatgattacact 27118430 Query: 312 gtagccgatgttgcggctccgtactggctgcgtcctggtgggcctacatggtggttccat 371 ||||| |||||||| ||||| ||||||| |||||| | || ||||||||||||| |||| Sbjct: 27118431 gtagctgatgttgcagctccatactggcagcgtccggtaggacctacatggtggtgccat 27118490 Query: 372 gtcacagcaggccatccttccgttgatgcatggttgagtagtgctcactggatgcatcca 431 ||||| ||||||||||| || ||||| |||||| ||| ||||||||||||||||||||| Sbjct: 27118491 gtcactgcaggccatccctcagttgacgcatggctgaatagtgctcactggatgcatccg 27118550 Query: 432 gctatcagaactgcactgagagatgaaagccggctgataagcgatcggatgaagtacctt 491 ||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 27118551 gctataagaactgcattgagagatgaaagccggctgataagtgatcggatgaagtacctt 27118610 Query: 492 ctctatgaggtt 503 |||||||||||| Sbjct: 27118611 ctctatgaggtt 27118622 Score = 135 bits (68), Expect = 2e-28 Identities = 128/148 (86%) Strand = Plus / Plus Query: 499 aggttccagttagagttgcaggaggactgttatttgagcttcttggtcaatcagtcgggg 558 |||| |||||||||||||| || |||||| ||||||| |||||||||||||||||||| | Sbjct: 27119780 aggtcccagttagagttgctgggggactgctatttgaacttcttggtcaatcagtcggag 27119839 Query: 559 atccaaatcatgaagaggaagacataccaattgtactcagatcgtggcaggcgcagaact 618 ||||||| | |||||||||||||||||| ||||| || | || ||||| || ||||||| Sbjct: 27119840 atccaaaccgtgaagaggaagacatacccattgtgcttcggtcttggcaagcacagaact 27119899 Query: 619 ttcttttaactgcaatgcatgtgaaagg 646 ||||| | || ||||||||||| ||||| Sbjct: 27119900 ttcttgtgaccgcaatgcatgtcaaagg 27119927
>dbj|AP003222.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0003E08 Length = 135014 Score = 317 bits (160), Expect = 3e-83 Identities = 274/312 (87%) Strand = Plus / Plus Query: 192 gatcacaagtgggtgccgattggatggtcaaggattgccgagctgagccagagggttcag 251 |||||||| |||||||| || |||||||| |||||||| || ||| ||||||||||||| Sbjct: 25989 gatcacaaatgggtgcctatcggatggtctaggattgctgaactggtccagagggttcag 26048 Query: 252 tcagatgctagctgggagaatgaacatgtgccgattagcgacagtgaggatgattacact 311 |||||||| |||||||| | ||| | | | ||| | |||||||||||||||||||||| Sbjct: 26049 tcagatgccagctgggatagtgagccggcggagatgaccgacagtgaggatgattacact 26108 Query: 312 gtagccgatgttgcggctccgtactggctgcgtcctggtgggcctacatggtggttccat 371 ||||| |||||||| ||||| ||||||| |||||| | || ||||||||||||| |||| Sbjct: 26109 gtagctgatgttgcagctccatactggcagcgtccggtaggacctacatggtggtgccat 26168 Query: 372 gtcacagcaggccatccttccgttgatgcatggttgagtagtgctcactggatgcatcca 431 ||||| ||||||||||| || ||||| |||||| ||| ||||||||||||||||||||| Sbjct: 26169 gtcactgcaggccatccctcagttgacgcatggctgaatagtgctcactggatgcatccg 26228 Query: 432 gctatcagaactgcactgagagatgaaagccggctgataagcgatcggatgaagtacctt 491 ||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 26229 gctataagaactgcattgagagatgaaagccggctgataagtgatcggatgaagtacctt 26288 Query: 492 ctctatgaggtt 503 |||||||||||| Sbjct: 26289 ctctatgaggtt 26300 Score = 135 bits (68), Expect = 2e-28 Identities = 128/148 (86%) Strand = Plus / Plus Query: 499 aggttccagttagagttgcaggaggactgttatttgagcttcttggtcaatcagtcgggg 558 |||| |||||||||||||| || |||||| ||||||| |||||||||||||||||||| | Sbjct: 27458 aggtcccagttagagttgctgggggactgctatttgaacttcttggtcaatcagtcggag 27517 Query: 559 atccaaatcatgaagaggaagacataccaattgtactcagatcgtggcaggcgcagaact 618 ||||||| | |||||||||||||||||| ||||| || | || ||||| || ||||||| Sbjct: 27518 atccaaaccgtgaagaggaagacatacccattgtgcttcggtcttggcaagcacagaact 27577 Query: 619 ttcttttaactgcaatgcatgtgaaagg 646 ||||| | || ||||||||||| ||||| Sbjct: 27578 ttcttgtgaccgcaatgcatgtcaaagg 27605
>dbj|AP004908.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT12N11, TM0066, complete sequence Length = 79585 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 499 aggttccagttagagttgcaggaggactgttatttgagct 538 |||| ||||| ||||||||||||||||| ||||||||||| Sbjct: 1219 aggtcccagtcagagttgcaggaggacttttatttgagct 1258
>gb|AC135102.16| Medicago truncatula clone mth2-8m3, complete sequence Length = 144042 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 468 ataagcgatcggatgaagtaccttctctatgaggt 502 ||||| || ||||||||| |||||||||||||||| Sbjct: 109849 ataagtgagcggatgaagcaccttctctatgaggt 109815
>gb|AC154557.2| Mus musculus BAC clone RP23-425M9 from 17, complete sequence Length = 186378 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 513 gttgcaggaggactgttattt 533 ||||||||||||||||||||| Sbjct: 13554 gttgcaggaggactgttattt 13574
>emb|CT030155.10| Mouse DNA sequence from clone RP23-425N11 on chromosome 17, complete sequence Length = 189713 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 513 gttgcaggaggactgttattt 533 ||||||||||||||||||||| Sbjct: 47445 gttgcaggaggactgttattt 47465
>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete sequence Length = 1438950 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gccgattggatggtcaagga 225 |||||||||||||||||||| Sbjct: 235265 gccgattggatggtcaagga 235284
>ref|XM_980130.1| PREDICTED: Mus musculus similar to 60S ribosomal protein L29 (LOC383770), mRNA Length = 525 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 tgagagatgaaagccggctg 467 |||||||||||||||||||| Sbjct: 356 tgagagatgaaagccggctg 337
>ref|XM_908538.1| PREDICTED: Mus musculus similar to 60S ribosomal protein L29 (LOC383770), mRNA Length = 525 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 tgagagatgaaagccggctg 467 |||||||||||||||||||| Sbjct: 356 tgagagatgaaagccggctg 337
>ref|XM_357236.4| PREDICTED: Mus musculus similar to 60S ribosomal protein L29 (LOC383770), mRNA Length = 525 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 448 tgagagatgaaagccggctg 467 |||||||||||||||||||| Sbjct: 356 tgagagatgaaagccggctg 337
>ref|XM_571244.1| Cryptococcus neoformans var. neoformans JEC21 glycine-tRNA ligase (CNF00730) partial mRNA Length = 2157 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 gccgattggatggtcaagga 225 |||||||||||||||||||| Sbjct: 407 gccgattggatggtcaagga 426
>emb|BX537114.2| Human DNA sequence from clone RP11-289H16 on chromosome 1 Contains part of the gene for a novel protein similar to formin binding protein 2 (FNBP2) and a novel gene, complete sequence Length = 156399 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 564 aatcatgaagaggaagacat 583 |||||||||||||||||||| Sbjct: 87876 aatcatgaagaggaagacat 87895
>gb|AC091091.2| Gallus gallus clone WAG-93J15, complete sequence Length = 136822 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 560 tccaaatcatgaagaggaagacat 583 ||||| |||||||||||||||||| Sbjct: 123882 tccaagtcatgaagaggaagacat 123905
>emb|AL161736.33| Human DNA sequence from clone RP11-421E17 on chromosome 1 Contains the 3' end of the FNBP2 gene for formin binding protein 2 and a RAP1, GTP-GDP dissociation stimulator 1 (RAP1GDS1) pseudogene, complete sequence Length = 159474 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 564 aatcatgaagaggaagacat 583 |||||||||||||||||||| Sbjct: 7743 aatcatgaagaggaagacat 7762
>emb|AL078463.11|HSJ365I19 Human DNA sequence from clone RP3-365I19 on chromosome 1 Contains part of the gene for a novel protein similar to formin binding protein 2 (FNBP2), complete sequence Length = 144444 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 564 aatcatgaagaggaagacat 583 |||||||||||||||||||| Sbjct: 48614 aatcatgaagaggaagacat 48595
>gb|AC010067.7| Drosophila melanogaster 3L BAC RP98-10I10 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 179856 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 505 cagttagagttgcaggagga 524 |||||||||||||||||||| Sbjct: 117811 cagttagagttgcaggagga 117830
>dbj|AB223639.1| Aspergillus oryzae cDNA, contig sequence: AoEST0479 Length = 604 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 565 atcatgaagaggaagacata 584 |||||||||||||||||||| Sbjct: 59 atcatgaagaggaagacata 78
>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 Length = 2661830 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 565 atcatgaagaggaagacata 584 |||||||||||||||||||| Sbjct: 315542 atcatgaagaggaagacata 315561
>gb|AE003478.3| Drosophila melanogaster chromosome 3L, section 12 of 83 of the complete sequence Length = 317354 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 505 cagttagagttgcaggagga 524 |||||||||||||||||||| Sbjct: 308363 cagttagagttgcaggagga 308344
>emb|AL591606.4| Mouse DNA sequence from clone RP23-272O14 on chromosome 2, complete sequence Length = 179373 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 448 tgagagatgaaagccggctg 467 |||||||||||||||||||| Sbjct: 153940 tgagagatgaaagccggctg 153959 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,874,004 Number of Sequences: 3902068 Number of extensions: 4874004 Number of successful extensions: 81912 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81839 Number of HSP's gapped (non-prelim): 73 length of query: 646 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 623 effective length of database: 17,143,297,704 effective search space: 10680274469592 effective search space used: 10680274469592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
