| Clone Name | baal23j21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC078839.4| Oryza sativa (japonica cultivar-group) chromosome X clone OSJNBa0094J09, complete sequence Length = 168192 Score = 367 bits (185), Expect = 2e-98 Identities = 380/445 (85%) Strand = Plus / Minus Query: 25 tgctgtatactgagataatatggttgagtgcacaatggtatcgaccttgcttgacggtct 84 ||||||||| |||||| |||| |||||||| ||||| | || || | |||| ||||| Sbjct: 99704 tgctgtataatgagatcatatctttgagtgctcaatgatgtcaacactaattgatggtct 99645 Query: 85 tcctaatgaagtggctctccagtgccttgcacgtgttccgtttgtatcccatcctactct 144 ||||||||||| ||||| |||||||||||||| || || ||| | ||||||||| ||| Sbjct: 99644 ccctaatgaagttgctcttcagtgccttgcacgggtgccatttttgtcccatcctgttct 99585 Query: 145 tcagctggtttgccgctcttggagagcatctgtttgcaacggggagcttctcaacgttcg 204 ||| |||| |||| |||||||||||||||||| | || || |||||| ||| ||| | Sbjct: 99584 tcaaatggtctgccattcttggagagcatctgttcgaaatggtgagctttccaaagttag 99525 Query: 205 gaatcagattggtgcgacagaagaactgctatgtgtgttagcatttgaacctgaaaatat 264 |||||||||| ||||||| ||||| ||| |||||||||||||||||||||||||||| || Sbjct: 99524 gaatcagattagtgcgactgaagacctgttatgtgtgttagcatttgaacctgaaaacat 99465 Query: 265 ttggcaactttatgatcctcgtcgagacaagtggataactctccctgtcatgccatctca 324 ||||| |||||||| |||| |||||| ||||||||||| || ||||||||||||||||| Sbjct: 99464 gtggcagctttatgaccctcttcgagataagtggataacccttcctgtcatgccatctca 99405 Query: 325 gattaggaacattgcccgttttggagttacctctgttgctggaaaactctatgtaattgg 384 ||||||||| ||||| ||||||||||| |||| ||||| || || |||||||||||||| Sbjct: 99404 gattaggaatattgctcgttttggagtggcctcggttgcaggcaagctctatgtaattgg 99345 Query: 385 tggtggcagcgatagagttgatccccttaccggagaccatgacacaatctttgcgagcaa 444 ||||||||| ||| ||||||| || ||||| ||||||||||||| |||||||| ||||| Sbjct: 99344 tggtggcagtgatcgagttgacccacttactggagaccatgacaggatctttgcaagcaa 99285 Query: 445 tgaggtctggtcttatgatcctctc 469 |||||| |||||||||||||||||| Sbjct: 99284 tgaggtttggtcttatgatcctctc 99260
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 367 bits (185), Expect = 2e-98 Identities = 380/445 (85%) Strand = Plus / Minus Query: 25 tgctgtatactgagataatatggttgagtgcacaatggtatcgaccttgcttgacggtct 84 ||||||||| |||||| |||| |||||||| ||||| | || || | |||| ||||| Sbjct: 12300548 tgctgtataatgagatcatatctttgagtgctcaatgatgtcaacactaattgatggtct 12300489 Query: 85 tcctaatgaagtggctctccagtgccttgcacgtgttccgtttgtatcccatcctactct 144 ||||||||||| ||||| |||||||||||||| || || ||| | ||||||||| ||| Sbjct: 12300488 ccctaatgaagttgctcttcagtgccttgcacgggtgccatttttgtcccatcctgttct 12300429 Query: 145 tcagctggtttgccgctcttggagagcatctgtttgcaacggggagcttctcaacgttcg 204 ||| |||| |||| |||||||||||||||||| | || || |||||| ||| ||| | Sbjct: 12300428 tcaaatggtctgccattcttggagagcatctgttcgaaatggtgagctttccaaagttag 12300369 Query: 205 gaatcagattggtgcgacagaagaactgctatgtgtgttagcatttgaacctgaaaatat 264 |||||||||| ||||||| ||||| ||| |||||||||||||||||||||||||||| || Sbjct: 12300368 gaatcagattagtgcgactgaagacctgttatgtgtgttagcatttgaacctgaaaacat 12300309 Query: 265 ttggcaactttatgatcctcgtcgagacaagtggataactctccctgtcatgccatctca 324 ||||| |||||||| |||| |||||| ||||||||||| || ||||||||||||||||| Sbjct: 12300308 gtggcagctttatgaccctcttcgagataagtggataacccttcctgtcatgccatctca 12300249 Query: 325 gattaggaacattgcccgttttggagttacctctgttgctggaaaactctatgtaattgg 384 ||||||||| ||||| ||||||||||| |||| ||||| || || |||||||||||||| Sbjct: 12300248 gattaggaatattgctcgttttggagtggcctcggttgcaggcaagctctatgtaattgg 12300189 Query: 385 tggtggcagcgatagagttgatccccttaccggagaccatgacacaatctttgcgagcaa 444 ||||||||| ||| ||||||| || ||||| ||||||||||||| |||||||| ||||| Sbjct: 12300188 tggtggcagtgatcgagttgacccacttactggagaccatgacaggatctttgcaagcaa 12300129 Query: 445 tgaggtctggtcttatgatcctctc 469 |||||| |||||||||||||||||| Sbjct: 12300128 tgaggtttggtcttatgatcctctc 12300104
>dbj|AK065918.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049C12, full insert sequence Length = 1587 Score = 367 bits (185), Expect = 2e-98 Identities = 380/445 (85%) Strand = Plus / Plus Query: 25 tgctgtatactgagataatatggttgagtgcacaatggtatcgaccttgcttgacggtct 84 ||||||||| |||||| |||| |||||||| ||||| | || || | |||| ||||| Sbjct: 197 tgctgtataatgagatcatatctttgagtgctcaatgatgtcaacactaattgatggtct 256 Query: 85 tcctaatgaagtggctctccagtgccttgcacgtgttccgtttgtatcccatcctactct 144 ||||||||||| ||||| |||||||||||||| || || ||| | ||||||||| ||| Sbjct: 257 ccctaatgaagttgctcttcagtgccttgcacgggtgccatttttgtcccatcctgttct 316 Query: 145 tcagctggtttgccgctcttggagagcatctgtttgcaacggggagcttctcaacgttcg 204 ||| |||| |||| |||||||||||||||||| | || || |||||| ||| ||| | Sbjct: 317 tcaaatggtctgccattcttggagagcatctgttcgaaatggtgagctttccaaagttag 376 Query: 205 gaatcagattggtgcgacagaagaactgctatgtgtgttagcatttgaacctgaaaatat 264 |||||||||| ||||||| ||||| ||| |||||||||||||||||||||||||||| || Sbjct: 377 gaatcagattagtgcgactgaagacctgttatgtgtgttagcatttgaacctgaaaacat 436 Query: 265 ttggcaactttatgatcctcgtcgagacaagtggataactctccctgtcatgccatctca 324 ||||| |||||||| |||| |||||| ||||||||||| || ||||||||||||||||| Sbjct: 437 gtggcagctttatgaccctcttcgagataagtggataacccttcctgtcatgccatctca 496 Query: 325 gattaggaacattgcccgttttggagttacctctgttgctggaaaactctatgtaattgg 384 ||||||||| ||||| ||||||||||| |||| ||||| || || |||||||||||||| Sbjct: 497 gattaggaatattgctcgttttggagtggcctcggttgcaggcaagctctatgtaattgg 556 Query: 385 tggtggcagcgatagagttgatccccttaccggagaccatgacacaatctttgcgagcaa 444 ||||||||| ||| ||||||| || ||||| ||||||||||||| |||||||| ||||| Sbjct: 557 tggtggcagtgatcgagttgacccacttactggagaccatgacaggatctttgcaagcaa 616 Query: 445 tgaggtctggtcttatgatcctctc 469 |||||| |||||||||||||||||| Sbjct: 617 tgaggtttggtcttatgatcctctc 641
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 367 bits (185), Expect = 2e-98 Identities = 380/445 (85%) Strand = Plus / Minus Query: 25 tgctgtatactgagataatatggttgagtgcacaatggtatcgaccttgcttgacggtct 84 ||||||||| |||||| |||| |||||||| ||||| | || || | |||| ||||| Sbjct: 12307888 tgctgtataatgagatcatatctttgagtgctcaatgatgtcaacactaattgatggtct 12307829 Query: 85 tcctaatgaagtggctctccagtgccttgcacgtgttccgtttgtatcccatcctactct 144 ||||||||||| ||||| |||||||||||||| || || ||| | ||||||||| ||| Sbjct: 12307828 ccctaatgaagttgctcttcagtgccttgcacgggtgccatttttgtcccatcctgttct 12307769 Query: 145 tcagctggtttgccgctcttggagagcatctgtttgcaacggggagcttctcaacgttcg 204 ||| |||| |||| |||||||||||||||||| | || || |||||| ||| ||| | Sbjct: 12307768 tcaaatggtctgccattcttggagagcatctgttcgaaatggtgagctttccaaagttag 12307709 Query: 205 gaatcagattggtgcgacagaagaactgctatgtgtgttagcatttgaacctgaaaatat 264 |||||||||| ||||||| ||||| ||| |||||||||||||||||||||||||||| || Sbjct: 12307708 gaatcagattagtgcgactgaagacctgttatgtgtgttagcatttgaacctgaaaacat 12307649 Query: 265 ttggcaactttatgatcctcgtcgagacaagtggataactctccctgtcatgccatctca 324 ||||| |||||||| |||| |||||| ||||||||||| || ||||||||||||||||| Sbjct: 12307648 gtggcagctttatgaccctcttcgagataagtggataacccttcctgtcatgccatctca 12307589 Query: 325 gattaggaacattgcccgttttggagttacctctgttgctggaaaactctatgtaattgg 384 ||||||||| ||||| ||||||||||| |||| ||||| || || |||||||||||||| Sbjct: 12307588 gattaggaatattgctcgttttggagtggcctcggttgcaggcaagctctatgtaattgg 12307529 Query: 385 tggtggcagcgatagagttgatccccttaccggagaccatgacacaatctttgcgagcaa 444 ||||||||| ||| ||||||| || ||||| ||||||||||||| |||||||| ||||| Sbjct: 12307528 tggtggcagtgatcgagttgacccacttactggagaccatgacaggatctttgcaagcaa 12307469 Query: 445 tgaggtctggtcttatgatcctctc 469 |||||| |||||||||||||||||| Sbjct: 12307468 tgaggtttggtcttatgatcctctc 12307444
>gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier, hypothetical protein, putative NAM protein, putative cis-zeatin O-glucosyltransferases, putative small nuclear ribonucleoprotein, putative cis-zeatin O-glucosyltransferase, putative glutathione peroxidase, putative copper-exporting ATPases, putative serine/threonine dehydratase, and putative actin depolymerizing factor genes, complete cds; and hypothetical protein gene, partial cds Length = 157237 Score = 363 bits (183), Expect = 3e-97 Identities = 360/419 (85%) Strand = Plus / Minus Query: 52 gtgcacaatggtatcgaccttgcttgacggtcttcctaatgaagtggctctccagtgcct 111 |||||||||| ||| ||||| ||||| ||||| ||||| ||||| |||||||||||||| Sbjct: 31208 gtgcacaatgccatcaaccttacttgatggtctccctaacgaagttgctctccagtgcct 31149 Query: 112 tgcacgtgttccgtttgtatcccatcctactcttcagctggtttgccgctcttggagagc 171 |||||| || || || | | |||||| | |||||| ||||||||||||||||| |||| Sbjct: 31148 tgcacgggtgccattcttgttccatccgatgcttcagttggtttgccgctcttggcgagc 31089 Query: 172 atctgtttgcaacggggagcttctcaacgttcggaatcagattggtgcgacagaagaact 231 ||| ||||||| || || |||||||| ||||||||||||||| ||||||||||| || Sbjct: 31088 atcagtttgcagtggcgaacttctcaaaattcggaatcagattgacgcgacagaagagct 31029 Query: 232 gctatgtgtgttagcatttgaacctgaaaatatttggcaactttatgatcctcgtcgaga 291 | |||||||| || |||||||| ||||| || ||||||||||||||||| | ||||| Sbjct: 31028 cttgtgtgtgttggcgtttgaaccagaaaacatgtggcaactttatgatcccctacgaga 30969 Query: 292 caagtggataactctccctgtcatgccatctcagattaggaacattgcccgttttggagt 351 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct: 30968 caagtggataactctccctgtcatgccatctcagattaggaacatagcccgctttggagt 30909 Query: 352 tacctctgttgctggaaaactctatgtaattggtggtggcagcgatagagttgatcccct 411 |||| ||||||||||| ||||| ||||||||||||||||| ||| |||||||||| || Sbjct: 30908 ggcctcagttgctggaaagctctacgtaattggtggtggcagtgatcgagttgatccact 30849 Query: 412 taccggagaccatgacacaatctttgcgagcaatgaggtctggtcttatgatcctctcc 470 ||| ||||| || |||| |||||||| ||||||||||| |||||||||||||| |||| Sbjct: 30848 tactggagatcacgacaggatctttgcaagcaatgaggtttggtcttatgatccgctcc 30790
>ref|NM_196266.1| Oryza sativa (japonica cultivar-group) putative protein (OSJNBa0094J09.17), mRNA Length = 939 Score = 218 bits (110), Expect = 1e-53 Identities = 176/198 (88%) Strand = Plus / Plus Query: 272 ctttatgatcctcgtcgagacaagtggataactctccctgtcatgccatctcagattagg 331 |||||||| |||| |||||| ||||||||||| || |||||||||||||||||||||||| Sbjct: 109 ctttatgaccctcttcgagataagtggataacccttcctgtcatgccatctcagattagg 168 Query: 332 aacattgcccgttttggagttacctctgttgctggaaaactctatgtaattggtggtggc 391 || ||||| ||||||||||| |||| ||||| || || ||||||||||||||||||||| Sbjct: 169 aatattgctcgttttggagtggcctcggttgcaggcaagctctatgtaattggtggtggc 228 Query: 392 agcgatagagttgatccccttaccggagaccatgacacaatctttgcgagcaatgaggtc 451 || ||| ||||||| || ||||| ||||||||||||| |||||||| ||||||||||| Sbjct: 229 agtgatcgagttgacccacttactggagaccatgacaggatctttgcaagcaatgaggtt 288 Query: 452 tggtcttatgatcctctc 469 |||||||||||||||||| Sbjct: 289 tggtcttatgatcctctc 306 Score = 77.8 bits (39), Expect = 3e-11 Identities = 84/99 (84%) Strand = Plus / Plus Query: 80 ggtcttcctaatgaagtggctctccagtgccttgcacgtgttccgtttgtatcccatcct 139 ||||| ||||||||||| ||||| |||||||||||||| || || ||| | ||||||||| Sbjct: 3 ggtctccctaatgaagttgctcttcagtgccttgcacgggtgccatttttgtcccatcct 62 Query: 140 actcttcagctggtttgccgctcttggagagcatctgtt 178 |||||| |||| |||| |||||||||||||||||| Sbjct: 63 gttcttcaaatggtctgccattcttggagagcatctgtt 101
>gb|AF498373.1| Heterodera sp. Moghan-SS-2002 internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 970 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 148 gctggtttgccgctcttggag 168 ||||||||||||||||||||| Sbjct: 254 gctggtttgccgctcttggag 274
>emb|BX571802.15| Zebrafish DNA sequence from clone CH211-197A16 in linkage group 10, complete sequence Length = 196999 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 tatgtgtgttagcatttgaa 253 |||||||||||||||||||| Sbjct: 185774 tatgtgtgttagcatttgaa 185755
>emb|Z48584.1|CEZK1321 Caenorhabditis elegans Cosmid ZK1321, complete sequence Length = 18828 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 aaatatttggcaactttatg 278 |||||||||||||||||||| Sbjct: 3192 aaatatttggcaactttatg 3211
>gb|AC121966.2| Mus musculus BAC clone RP24-267N15 from 12, complete sequence Length = 163521 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 aaatatttggcaactttatg 278 |||||||||||||||||||| Sbjct: 76636 aaatatttggcaactttatg 76655
>gb|AC121978.2| Mus musculus BAC clone RP24-289K21 from 14, complete sequence Length = 168968 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 tgctatgtgtgttagcattt 250 |||||||||||||||||||| Sbjct: 86793 tgctatgtgtgttagcattt 86774
>emb|AL354889.14| Human DNA sequence from clone RP11-290F20 on chromosome 20 Contains three novel genes, complete sequence Length = 160311 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 ttgaacctgaaaatatttgg 268 |||||||||||||||||||| Sbjct: 21 ttgaacctgaaaatatttgg 2
>emb|AL161937.13| Human DNA sequence from clone RP11-112L6 on chromosome 20 Contains the CEBPB (CCAAT/enhancer binding protein (C/EBP), beta)) gene, a putative novel gene, ESTs, STSs, GSSs and two CpG islands.n, complete sequence Length = 93399 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 ttgaacctgaaaatatttgg 268 |||||||||||||||||||| Sbjct: 93320 ttgaacctgaaaatatttgg 93301
>gb|AC009381.10| Drosophila melanogaster 3L BAC RP98-13N10 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167816 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 aaatatttggcaactttatg 278 |||||||||||||||||||| Sbjct: 55504 aaatatttggcaactttatg 55523
>gb|AC009384.7| Drosophila melanogaster 3L BAC RP98-10L1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 168652 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 aaatatttggcaactttatg 278 |||||||||||||||||||| Sbjct: 2679 aaatatttggcaactttatg 2660
>gb|AC158515.2| Mus musculus BAC clone RP24-487D11 from chromosome 9, complete sequence Length = 176590 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 tccagtgccttgcacgtgtt 121 |||||||||||||||||||| Sbjct: 14044 tccagtgccttgcacgtgtt 14063
>emb|AJ328488.1|HSA328488 Homo sapiens genomic sequence surrounding NotI site, clone HSJ-6AK9RS Length = 728 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 actcttcagctggtttgccg 159 |||||||||||||||||||| Sbjct: 337 actcttcagctggtttgccg 318
>gb|AE003515.4| Drosophila melanogaster chromosome 3L, section 70 of 83 of the complete sequence Length = 234263 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 aaatatttggcaactttatg 278 |||||||||||||||||||| Sbjct: 155268 aaatatttggcaactttatg 155249
>emb|AL929514.7| Zebrafish DNA sequence from clone CH211-187D9, complete sequence Length = 174473 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 tgtgttagcatttgaacctg 257 |||||||||||||||||||| Sbjct: 121086 tgtgttagcatttgaacctg 121067
>emb|CT010509.10| Mouse DNA sequence from clone RP23-63E8 on chromosome 9, complete sequence Length = 258170 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 tccagtgccttgcacgtgtt 121 |||||||||||||||||||| Sbjct: 121365 tccagtgccttgcacgtgtt 121346
>emb|AJ716192.1| Solanum caripense non-TIR-R1-like-NBS-LRR, SC_RL4-9 Length = 506 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 atatttggcaactttatgat 280 |||||||||||||||||||| Sbjct: 354 atatttggcaactttatgat 335 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,269,422 Number of Sequences: 3902068 Number of extensions: 3269422 Number of successful extensions: 52554 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52495 Number of HSP's gapped (non-prelim): 58 length of query: 470 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 448 effective length of database: 17,147,199,772 effective search space: 7681945497856 effective search space used: 7681945497856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)