ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal23j13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 46 0.093
2gb|AC131730.2| Mus musculus BAC clone RP23-115A5 from chromosome... 44 0.37
3gb|AC155829.5| Mus musculus 10 BAC RP24-534E16 (Roswell Park Can... 44 0.37
4gb|AC007729.3| Arabidopsis thaliana chromosome 2 BAC T18C6 genom... 44 0.37
5gb|AC007143.5| Arabidopsis thaliana chromosome 2 BAC T17H1 genom... 44 0.37
6emb|Y08501.2|MIATGENA Arabidopsis thaliana mitochondrial genome 44 0.37
7emb|X96536.1|ATNADPT A.thaliana mitochondrial tRNA-Tyr pseudogen... 44 0.37
8emb|AL590093.10| Human DNA sequence from clone RP11-240D10 on ch... 42 1.5
9gb|AC079096.4| Homo sapiens chromosome 18, clone RP11-75N4, comp... 42 1.5
10gb|AC021549.9| Homo sapiens chromosome 18, clone RP11-650P15, co... 42 1.5
11gb|DP000040.1| Otolemur garnettii target 106 genomic scaffold 42 1.5
12emb|BX539336.7| Zebrafish DNA sequence from clone CH211-128H21 i... 42 1.5
13gb|AC011736.4|AC011736 Homo sapiens BAC clone CTD-2331A14 from 1... 42 1.5
14gb|AY105889.1| Zea mays PCO106909 mRNA sequence 42 1.5
15ref|XM_517875.1| PREDICTED: Pan troglodytes similar to Adenomato... 40 5.7
16ref|NM_192718.1| Oryza sativa (japonica cultivar-group), predic... 40 5.7
17ref|XM_479184.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.7
18ref|XM_506479.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 5.7
19gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence 40 5.7
20gb|AC091330.18| Trypanosoma brucei chromosome 3 clone RPCI93-48O... 40 5.7
21gb|AC093439.2| Drosophila melanogaster clone BACR28A12, complete... 40 5.7
22gb|AC140205.2| Mus musculus BAC clone RP24-344F2 from chromosome... 40 5.7
23ref|XM_283804.6| PREDICTED: Mus musculus RIKEN cDNA 9830001H06 g... 40 5.7
24gb|AE014304.1| Homo sapiens chromosome 13q34 schizophrenia regio... 40 5.7
25gb|AC161189.11| Mus musculus chromosome 8, clone RP23-337N9, com... 40 5.7
26emb|AL512484.13| Human DNA sequence from clone RP11-26A3 on chro... 40 5.7
27emb|AL161771.17| Human DNA sequence from clone RP11-11L8 on chro... 40 5.7
28emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genom... 40 5.7
29gb|AC162382.8| Mus musculus 6 BAC RP24-398M13 (Roswell Park Canc... 40 5.7
30gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 5.7
31gb|AC100849.3| Homo sapiens chromosome 8, clone RP11-1080G15, co... 40 5.7
32gb|AC109473.2| Homo sapiens chromosome 5 clone RP11-3B10, comple... 40 5.7
33ref|XM_684899.1| PREDICTED: Danio rerio similar to Tmc5 protein ... 40 5.7
34emb|BX470132.6| Zebrafish DNA sequence from clone DKEY-202L16 in... 40 5.7
35gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 5.7
36gb|AC020750.4| Homo sapiens chromosome 3 clone RP11-105H19 map 3... 40 5.7
37gb|AC115695.11| Mus musculus chromosome 5, clone RP24-229D18, co... 40 5.7
38emb|AL114102.1|CNS01BDQ Botrytis cinerea strain T4 cDNA library 40 5.7
39dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
40dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
41gb|AC007711.9|AC007711 Drosophila melanogaster, chromosome 3R, r... 40 5.7
42gb|AY205563.1| Chlamydomonas reinhardtii genomic sequence 40 5.7
43gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.7
44gb|AC060813.12| Homo sapiens chromosome 8, clone RP11-809N7, com... 40 5.7
45dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 40 5.7
46dbj|AP004380.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
47dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
48dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
49dbj|AK071567.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
50dbj|AK059824.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
51gb|AE003728.3| Drosophila melanogaster chromosome 3R, section 66... 40 5.7
52gb|AE003636.4| Drosophila melanogaster chromosome 2L, section 45... 40 5.7
53gb|AC006470.1|AC006470 Drosophila melanogaster, chromosome 2R, r... 40 5.7
54gb|AC110192.14| Mus musculus chromosome 7, clone RP23-227K15, co... 40 5.7
55gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 5.7
56dbj|D13981.1|HUMAPC2 Homo sapiens gene for APC, exon 1B 40 5.7
57gb|AC136500.1| Homo sapiens chromosome 5 clone RP11-56P2, comple... 40 5.7
58emb|AL669932.14| Mouse DNA sequence from clone RP23-430P1 on chr... 40 5.7

>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 46.1 bits (23), Expect = 0.093
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 224     cgacgctgccgccggcgaacaccagca 250
               |||||||||||||| ||||||||||||
Sbjct: 2184069 cgacgctgccgccgccgaacaccagca 2184043



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>gb|AC131730.2| Mus musculus BAC clone RP23-115A5 from chromosome 5, complete sequence
          Length = 218708

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 65    agcaacatggcccgagaacagc 86
             ||||||||||||||||||||||
Sbjct: 98527 agcaacatggcccgagaacagc 98506



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>gb|AC155829.5| Mus musculus 10 BAC RP24-534E16 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 191442

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 314    cctctctttctgtaggagcagc 335
              ||||||||||||||||||||||
Sbjct: 119780 cctctctttctgtaggagcagc 119759



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>gb|AC007729.3| Arabidopsis thaliana chromosome 2 BAC T18C6 genomic sequence,
            complete sequence
          Length = 114068

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 141  ccctcttagatggagcctcaac 162
            ||||||||||||||||||||||
Sbjct: 2983 ccctcttagatggagcctcaac 3004



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>gb|AC007143.5| Arabidopsis thaliana chromosome 2 BAC T17H1 genomic sequence, complete
             sequence
          Length = 75812

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 141   ccctcttagatggagcctcaac 162
             ||||||||||||||||||||||
Sbjct: 75025 ccctcttagatggagcctcaac 75046



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>emb|Y08501.2|MIATGENA Arabidopsis thaliana mitochondrial genome
          Length = 366924

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 141    ccctcttagatggagcctcaac 162
              ||||||||||||||||||||||
Sbjct: 334838 ccctcttagatggagcctcaac 334817



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>emb|X96536.1|ATNADPT A.thaliana mitochondrial tRNA-Tyr pseudogene & nad2 gene, exon 3,4
           & 5
          Length = 8130

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 141 ccctcttagatggagcctcaac 162
           ||||||||||||||||||||||
Sbjct: 664 ccctcttagatggagcctcaac 685



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>emb|AL590093.10| Human DNA sequence from clone RP11-240D10 on chromosome 1 Contains the
             3' end of the THEA gene for thioesterase (adipose
             associated), a novel gene (MGC27169), a novel gene and the
             5' end of a novel gene (FLJ46354), complete sequence
          Length = 62485

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 300   cctcccatgctctccctctctttct 324
             |||||| ||||||||||||||||||
Sbjct: 48653 cctcccctgctctccctctctttct 48677



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>gb|AC079096.4| Homo sapiens chromosome 18, clone RP11-75N4, complete sequence
          Length = 119927

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 32    aggctctcctcttcttccctt 52
             |||||||||||||||||||||
Sbjct: 15666 aggctctcctcttcttccctt 15686



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>gb|AC021549.9| Homo sapiens chromosome 18, clone RP11-650P15, complete sequence
          Length = 183066

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 32  aggctctcctcttcttccctt 52
           |||||||||||||||||||||
Sbjct: 881 aggctctcctcttcttccctt 861



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>gb|DP000040.1| Otolemur garnettii target 106 genomic scaffold
          Length = 277620

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 304   ccatgctctccctctctttct 324
             |||||||||||||||||||||
Sbjct: 16986 ccatgctctccctctctttct 17006



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>emb|BX539336.7| Zebrafish DNA sequence from clone CH211-128H21 in linkage group 23,
              complete sequence
          Length = 183357

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 300    cctcccatgctctccctctctttct 324
              ||||| |||||||||||||||||||
Sbjct: 112062 cctcctatgctctccctctctttct 112086



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>gb|AC011736.4|AC011736 Homo sapiens BAC clone CTD-2331A14 from 1, complete sequence
          Length = 122146

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 300   cctcccatgctctccctctctttct 324
             |||||| ||||||||||||||||||
Sbjct: 45072 cctcccctgctctccctctctttct 45048



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>gb|AY105889.1| Zea mays PCO106909 mRNA sequence
          Length = 1420

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 330 agcagcagcagccgccatgggagcc 354
           |||||||||||||||||||| ||||
Sbjct: 32  agcagcagcagccgccatggaagcc 56



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>ref|XM_517875.1| PREDICTED: Pan troglodytes similar to Adenomatous polyposis coli
           protein (APC protein) (LOC461998), mRNA
          Length = 577

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 352 gcctccctgggctcgggtcc 371
           ||||||||||||||||||||
Sbjct: 132 gcctccctgggctcgggtcc 151



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>ref|NM_192718.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1413

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 222  gacgacgctgccgccggcgaacaccagc 249
            |||||||  |||||||||||||||||||
Sbjct: 1251 gacgacggcgccgccggcgaacaccagc 1224



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>ref|XM_479184.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1000

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 330 agcagcagcagccgccatgg 349
           ||||||||||||||||||||
Sbjct: 44  agcagcagcagccgccatgg 63



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>ref|XM_506479.1| PREDICTED Oryza sativa (japonica cultivar-group), P0594D10.123 mRNA
          Length = 1055

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 330 agcagcagcagccgccatgg 349
           ||||||||||||||||||||
Sbjct: 106 agcagcagcagccgccatgg 125



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>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence
          Length = 1653225

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 318    tctttctgtaggagcagcagcagc 341
              |||||||| |||||||||||||||
Sbjct: 596890 tctttctggaggagcagcagcagc 596913



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>gb|AC091330.18| Trypanosoma brucei chromosome 3 clone RPCI93-48O8, complete sequence
          Length = 138368

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 318    tctttctgtaggagcagcagcagc 341
              |||||||| |||||||||||||||
Sbjct: 106268 tctttctggaggagcagcagcagc 106245



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>gb|AC093439.2| Drosophila melanogaster clone BACR28A12, complete sequence
          Length = 186444

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 330   agcagcagcagccgccatgg 349
             ||||||||||||||||||||
Sbjct: 69964 agcagcagcagccgccatgg 69945



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>gb|AC140205.2| Mus musculus BAC clone RP24-344F2 from chromosome 8, complete sequence
          Length = 140215

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 323   ctgtaggagcagcagcagcc 342
             ||||||||||||||||||||
Sbjct: 11588 ctgtaggagcagcagcagcc 11607



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>ref|XM_283804.6| PREDICTED: Mus musculus RIKEN cDNA 9830001H06 gene (9830001H06Rik),
             mRNA
          Length = 13602

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   ccaagcacctccttccctca 119
             ||||||||||||||||||||
Sbjct: 10635 ccaagcacctccttccctca 10654



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>gb|AE014304.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 1
             of 11 of the complete sequence
          Length = 250029

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 305   catgctctccctctctttct 324
             ||||||||||||||||||||
Sbjct: 56677 catgctctccctctctttct 56696



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>gb|AC161189.11| Mus musculus chromosome 8, clone RP23-337N9, complete sequence
          Length = 186769

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 323    ctgtaggagcagcagcagcc 342
              ||||||||||||||||||||
Sbjct: 144998 ctgtaggagcagcagcagcc 145017



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>emb|AL512484.13| Human DNA sequence from clone RP11-26A3 on chromosome 13, complete
              sequence
          Length = 124446

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 304    ccatgctctccctctctttc 323
              ||||||||||||||||||||
Sbjct: 113078 ccatgctctccctctctttc 113097



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>emb|AL161771.17| Human DNA sequence from clone RP11-11L8 on chromosome 13 Contains the
             SLC10A2 gene for solute carrier family 10 (sodium/bile
             acid cotransporter family, member 2, complete sequence
          Length = 171132

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 305   catgctctccctctctttct 324
             ||||||||||||||||||||
Sbjct: 37856 catgctctccctctctttct 37875



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>emb|BX572603.1| Rhodopseudomonas palustris CGA009 complete genome; segment 11/16
          Length = 349635

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 224    cgacgctgccgccggcgaacacca 247
              ||||||||||||||| ||||||||
Sbjct: 112344 cgacgctgccgccggggaacacca 112367



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>gb|AC162382.8| Mus musculus 6 BAC RP24-398M13 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 200253

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 309   ctctccctctctttctgtag 328
             ||||||||||||||||||||
Sbjct: 41848 ctctccctctctttctgtag 41829



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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 228     gctgccgccggcgaacacca 247
               ||||||||||||||||||||
Sbjct: 3812953 gctgccgccggcgaacacca 3812934



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>gb|AC100849.3| Homo sapiens chromosome 8, clone RP11-1080G15, complete sequence
          Length = 176814

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   cctcttagatggagcctcaa 161
             ||||||||||||||||||||
Sbjct: 49562 cctcttagatggagcctcaa 49543



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>gb|AC109473.2| Homo sapiens chromosome 5 clone RP11-3B10, complete sequence
          Length = 170363

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 352   gcctccctgggctcgggtcc 371
             ||||||||||||||||||||
Sbjct: 91109 gcctccctgggctcgggtcc 91090



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>ref|XM_684899.1| PREDICTED: Danio rerio similar to Tmc5 protein (LOC561497), mRNA
          Length = 2065

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 34   gctctcctcttcttcccttc 53
            ||||||||||||||||||||
Sbjct: 1688 gctctcctcttcttcccttc 1707



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>emb|BX470132.6| Zebrafish DNA sequence from clone DKEY-202L16 in linkage group 3,
            complete sequence
          Length = 163404

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 34   gctctcctcttcttcccttc 53
            ||||||||||||||||||||
Sbjct: 5240 gctctcctcttcttcccttc 5259



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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 267     tcgcgtccccgtttctccct 286
               ||||||||||||||||||||
Sbjct: 2606251 tcgcgtccccgtttctccct 2606232



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>gb|AC020750.4| Homo sapiens chromosome 3 clone RP11-105H19 map 3p, complete sequence
          Length = 156933

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 301   ctcccatgctctccctctctttct 324
             ||||||| ||||||||||||||||
Sbjct: 26562 ctcccatactctccctctctttct 26585



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>gb|AC115695.11| Mus musculus chromosome 5, clone RP24-229D18, complete sequence
          Length = 161430

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 288   tctgctctctaacctcccatgctctccctctc 319
             ||||||| | |||||||||||| |||||||||
Sbjct: 87152 tctgctcaccaacctcccatgccctccctctc 87121



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>emb|AL114102.1|CNS01BDQ Botrytis cinerea strain T4 cDNA library
          Length = 1140

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 34   gctctcctcttcttcccttc 53
            ||||||||||||||||||||
Sbjct: 1007 gctctcctcttcttcccttc 1026



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 330      agcagcagcagccgccatgg 349
                ||||||||||||||||||||
Sbjct: 25624315 agcagcagcagccgccatgg 25624334



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 222      gacgacgctgccgccggcgaacaccagc 249
                |||||||  |||||||||||||||||||
Sbjct: 24015890 gacgacggcgccgccggcgaacaccagc 24015863



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 329     gagcagcagcagccgccatg 348
               ||||||||||||||||||||
Sbjct: 1749083 gagcagcagcagccgccatg 1749064



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>gb|AC007711.9|AC007711 Drosophila melanogaster, chromosome 3R, region 92B-92B, BAC clone
              BACR02O09, complete sequence
          Length = 155751

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 325    gtaggagcagcagcagccgc 344
              ||||||||||||||||||||
Sbjct: 105940 gtaggagcagcagcagccgc 105959



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>gb|AY205563.1| Chlamydomonas reinhardtii genomic sequence
          Length = 7479

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 327  aggagcagcagcagccgccatggg 350
            ||||||||||||||| ||||||||
Sbjct: 6855 aggagcagcagcagcagccatggg 6832



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 120    gtccacgagctcgccggaga 139
              ||||||||||||||||||||
Sbjct: 661540 gtccacgagctcgccggaga 661559



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>gb|AC060813.12| Homo sapiens chromosome 8, clone RP11-809N7, complete sequence
          Length = 144872

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   cctcttagatggagcctcaa 161
             ||||||||||||||||||||
Sbjct: 12260 cctcttagatggagcctcaa 12279



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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 227     cgctgccgccggcgaacacc 246
               ||||||||||||||||||||
Sbjct: 2335954 cgctgccgccggcgaacacc 2335973



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>dbj|AP004380.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0594D10
          Length = 143200

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 330   agcagcagcagccgccatgg 349
             ||||||||||||||||||||
Sbjct: 78288 agcagcagcagccgccatgg 78307



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>dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0504H10
          Length = 143515

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 329   gagcagcagcagccgccatg 348
             ||||||||||||||||||||
Sbjct: 91426 gagcagcagcagccgccatg 91407



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>dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0090K04
          Length = 152556

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 222    gacgacgctgccgccggcgaacaccagc 249
              |||||||  |||||||||||||||||||
Sbjct: 130412 gacgacggcgccgccggcgaacaccagc 130385



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>dbj|AK071567.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100G12, full
           insert sequence
          Length = 1055

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 330 agcagcagcagccgccatgg 349
           ||||||||||||||||||||
Sbjct: 106 agcagcagcagccgccatgg 125



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>dbj|AK059824.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-E06, full
           insert sequence
          Length = 1000

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 330 agcagcagcagccgccatgg 349
           ||||||||||||||||||||
Sbjct: 44  agcagcagcagccgccatgg 63



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>gb|AE003728.3| Drosophila melanogaster chromosome 3R, section 66 of 118 of the
             complete sequence
          Length = 232094

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 325   gtaggagcagcagcagccgc 344
             ||||||||||||||||||||
Sbjct: 52687 gtaggagcagcagcagccgc 52706



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>gb|AE003636.4| Drosophila melanogaster chromosome 2L, section 45 of 83 of the complete
              sequence
          Length = 246231

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 330    agcagcagcagccgccatgg 349
              ||||||||||||||||||||
Sbjct: 204564 agcagcagcagccgccatgg 204545



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>gb|AC006470.1|AC006470 Drosophila melanogaster, chromosome 2R, region 33F1-33F2, P1 clones
             DS06792 and DS03749, complete sequence
          Length = 112972

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 330   agcagcagcagccgccatgg 349
             ||||||||||||||||||||
Sbjct: 23647 agcagcagcagccgccatgg 23628



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>gb|AC110192.14| Mus musculus chromosome 7, clone RP23-227K15, complete sequence
          Length = 181287

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 278   tttctccctttctgctctct 297
             ||||||||||||||||||||
Sbjct: 54912 tttctccctttctgctctct 54931



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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 231     gccgccggcgaacaccagca 250
               ||||||||||||||||||||
Sbjct: 4433293 gccgccggcgaacaccagca 4433274



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>dbj|D13981.1|HUMAPC2 Homo sapiens gene for APC, exon 1B
          Length = 586

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 352 gcctccctgggctcgggtcc 371
           ||||||||||||||||||||
Sbjct: 412 gcctccctgggctcgggtcc 431



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>gb|AC136500.1| Homo sapiens chromosome 5 clone RP11-56P2, complete sequence
          Length = 183967

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 352   gcctccctgggctcgggtcc 371
             ||||||||||||||||||||
Sbjct: 81280 gcctccctgggctcgggtcc 81261



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>emb|AL669932.14| Mouse DNA sequence from clone RP23-430P1 on chromosome 2, complete
             sequence
          Length = 148257

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   ccaagcacctccttccctca 119
             ||||||||||||||||||||
Sbjct: 78005 ccaagcacctccttccctca 77986


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,088,119
Number of Sequences: 3902068
Number of extensions: 4088119
Number of successful extensions: 107224
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106655
Number of HSP's gapped (non-prelim): 569
length of query: 427
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 405
effective length of database: 17,147,199,772
effective search space: 6944615907660
effective search space used: 6944615907660
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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