>YD81_SCHPO (Q10146) Hypothetical protein C1F3.01 in chromosome I|
          Length = 777

 Score = 39.3 bits (90), Expect = 0.008
 Identities = 34/133 (25%), Positives = 61/133 (45%)
 Frame = +1

Query: 34  HPPNSADGEDPAGNNVELPSLPFHVVTKPGQLPVEFLEPSAAKKLVIGFDCEGVDLCRNG 213
           +PP  ++  +P        + P  V T+  QL     E   +K++ +  +       R G
Sbjct: 197 YPPWVSEMSNPIDTGSVDETEPIWVSTE-SQLSDMLKELQNSKEIAVDLEHHDYRSFR-G 254

Query: 214 ALCIMQIAFPDAVYLVDAIEGGKELVEACKPALESDHVTKVIHDCKRDSEALYFQFGIKL 393
            +C+MQI+  +  ++VD +E  +EL EA      + ++ KV H    D   L   FG+ +
Sbjct: 255 FVCLMQISNREKDWIVDTLELREEL-EALNVVFTNPNIIKVFHGATMDIIWLQRDFGLYV 313

Query: 394 HNVMDTQIAYSLI 432
            N+ DT  A  ++
Sbjct: 314 VNLFDTYYATKVL 326

>EXOSX_MOUSE (P56960) Exosome component 10 (Polymyositis/scleroderma autoantigen|
           2 homolog) (Autoantigen PM/Scl 2 homolog)
          Length = 887

 Score = 35.8 bits (81), Expect = 0.084
 Identities = 22/74 (29%), Positives = 35/74 (47%)
 Frame = +1

Query: 211 GALCIMQIAFPDAVYLVDAIEGGKELVEACKPALESDHVTKVIHDCKRDSEALYFQFGIK 390
           G  C+MQI+     ++VD +E   ++      +L    + KV H    D E L   FG+ 
Sbjct: 324 GLTCLMQISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382

Query: 391 LHNVMDTQIAYSLI 432
           + N+ DT  A  L+
Sbjct: 383 VVNMFDTHQAARLL 396

>EXOSX_HUMAN (Q01780) Exosome component 10 (Polymyositis/scleroderma autoantigen|
           2) (Autoantigen PM/Scl 2) (Polymyositis/scleroderma
           autoantigen 100 kDa) (PM/Scl-100) (P100
           polymyositis-scleroderma overlap syndrome-associated
           autoantigen)
          Length = 885

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 21/74 (28%), Positives = 35/74 (47%)
 Frame = +1

Query: 211 GALCIMQIAFPDAVYLVDAIEGGKELVEACKPALESDHVTKVIHDCKRDSEALYFQFGIK 390
           G  C+MQI+     +++D +E   ++      +L    + KV H    D E L   FG+ 
Sbjct: 324 GLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 382

Query: 391 LHNVMDTQIAYSLI 432
           + N+ DT  A  L+
Sbjct: 383 VVNMFDTHQAARLL 396

>GAK_HUMAN (O14976) Cyclin G-associated kinase (EC 2.7.11.1)|
          Length = 1311

 Score = 33.1 bits (74), Expect = 0.54
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -1

Query: 317  DSSAGLQASTSSFPPS--IASTK*TASGNAICMIQRAPLRQRSTPSQSNP 174
            D S+GLQ S + FPP   I  T  T  G++     R P +  S P Q+ P
Sbjct: 1088 DLSSGLQGSPAGFPPGGFIPKTATTPKGSSSWQTSRPPAQGASWPPQAKP 1137

>FABG_BACSU (P51831) 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100)|
           (3-ketoacyl-acyl carrier protein reductase)
          Length = 246

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 227 MIQRAPLRQRSTPSQSNPITNFLAAEGSRNSTG 129
           M+++ PL +   PS  + +  FLA+EG+R  TG
Sbjct: 203 MLKQIPLARFGEPSDVSSVVTFLASEGARYMTG 235

>TRPA1_HUMAN (O75762) Transient receptor potential cation channel subfamily A|
            member 1 (Ankyrin-like with transmembrane domains protein
            1) (Transformation sensitive-protein p120)
          Length = 1119

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 18/38 (47%), Positives = 24/38 (63%)
 Frame = +2

Query: 101  FMLLLNLVNYRSSFLSPLLPRNW*LDLTAKVLTFAAMV 214
            F ++L  +NYR SFL P L RN   +L   VL+FA +V
Sbjct: 909  FSMMLGDINYRESFLEPYL-RN---ELAHPVLSFAQLV 942

>CDR_PYRFU (Q8U1M0) Coenzyme A disulfide reductase (EC 1.8.1.14)|
           (CoA-disulfide reductase) (CoADR)
          Length = 442

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +1

Query: 382 GIKLHNVMDTQIAYSLIEEQEGKKRAYDVYISFVSLLADPRYCGMPYPEKEEV 540
           G  +   MD +I  + + E E  K  YDV  +F+     P Y    YP   E+
Sbjct: 324 GTSITKFMDLEIGKTGLTENEAVKEGYDVRTAFIKANTKPHY----YPGGREI 372

>FABI_BACSU (P54616) Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9)|
           (NADH-dependent enoyl-ACP reductase) (Cold shock-induced
           protein 15) (CSI15) (Vegetative protein 241) (VEG241)
          Length = 258

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -1

Query: 293 STSSFPPSIASTK*TASGNAIC--MIQRAPLRQRSTPSQSNPITNFLAAEGSRNSTG 129
           S S+ P    S K  +  N+I   + +RAPLR+ +TP +      FL ++ SR  TG
Sbjct: 188 SISAGPIRTLSAKGISDFNSILKDIEERAPLRRTTTPEEVGDTAAFLFSDMSRGITG 244

>CDR_PYRHO (O58308) Coenzyme A disulfide reductase (EC 1.8.1.14)|
           (CoA-disulfide reductase) (CoADR)
          Length = 445

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +1

Query: 382 GIKLHNVMDTQIAYSLIEEQEGKKRAYDVYISFVSLLADPRYCGMPYPEKEEV 540
           G  +   MD +I  + + E E  K  YDV  +F+     P Y    YP   E+
Sbjct: 327 GTAVTKFMDVEIGKTGLTEMEALKEGYDVRTAFIKASTRPHY----YPGGREI 375

>ARLY_NOCFA (Q5YYD2) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 473

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +1

Query: 187 EGVDLCRNGALCIMQIAFPDAVYLVDAIEGGKELVEACKPALESDHVTKVIHDCKRDSEA 366
           +GV     G L ++      A    DA+  GK  ++A +P L + H+    H   RD E 
Sbjct: 132 DGVRRVAAGVLDVVDALVEQAAAHPDAVMPGKTHLQAAQPVLLAHHLLAHAHPLLRDIER 191

Query: 367 L 369
           L
Sbjct: 192 L 192

>ATG4B_BOVIN (Q6PZ03) Cysteine protease ATG4B (EC 3.4.22.-) (Autophagy-related|
           protein 4 homolog B) (Autophagy-related cysteine
           endopeptidase 2B) (Autophagin-2B) (bAut2B)
          Length = 393

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +1

Query: 40  PNSADGEDPAGNNVELPSLPFHVVTKPGQLPVEFLEPSAAKKLVIGFDCEGVD 198
           P++      A +   +P   FH    PG++ +  L+PS A    +GF CE  D
Sbjct: 279 PHTTQPAVAAADRCPVPDESFHCQHPPGRMSIAELDPSIA----VGFFCETED 327

>UBIH_ECOLI (P25534) 2-octaprenyl-6-methoxyphenol hydroxylase (EC 1.14.13.-)|
          Length = 392

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 18/60 (30%), Positives = 22/60 (36%)
 Frame = -2

Query: 199 GQHLRSQIQSPISWQQRAQETRPVVDQV**QHERAGMAIPRYSLRGPRHRRSWGDGRSSL 20
           G H        + WQQ   E   V+  V       G A  R++  GP       DGR SL
Sbjct: 163 GTHSALATACGVDWQQEPYEQLAVIANVATSVAHEGRAFERFTQHGPLAMLPMSDGRCSL 222

>RRP6_YEAST (Q12149) Exosome complex exonuclease RRP6 (EC 3.1.13.-) (Ribosomal|
           RNA-processing protein 6)
          Length = 733

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 20/74 (27%), Positives = 33/74 (44%)
 Frame = +1

Query: 211 GALCIMQIAFPDAVYLVDAIEGGKELVEACKPALESDHVTKVIHDCKRDSEALYFQFGIK 390
           G +C+MQI+  +  YLVD ++  +E +        +  + KV H    D   L    G+ 
Sbjct: 249 GIVCLMQISTRERDYLVDTLK-LRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLY 307

Query: 391 LHNVMDTQIAYSLI 432
           +  + DT  A   I
Sbjct: 308 VVGLFDTYHASKAI 321

>CAC1G_RAT (O54898) Voltage-dependent T-type calcium channel alpha-1G subunit|
            (Voltage-gated calcium channel alpha subunit Cav3.1)
          Length = 2254

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
 Frame = -1

Query: 278  PPSIASTK*TASGN------AICMIQRAPLRQRSTPSQSNPITNFLAAEGSRNSTGS*PG 117
            PPSI+     + G+       +C+ +RAP      PS S+P+ +  A+   +  T S  G
Sbjct: 2185 PPSISIDPPESQGSRPPCSPGVCLRRRAPASDSKDPSVSSPLDSTAASPSPKKDTLSLSG 2244

Query: 116  L 114
            L
Sbjct: 2245 L 2245


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,041,422
Number of Sequences: 219361
Number of extensions: 1769566
Number of successful extensions: 4830
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4824
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4545742239
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)