ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal23j02 |
|---|---|
| Clone Library Name | barley_pub |
>MYB_CHICK (P01103) Myb proto-oncogene protein (C-myb)| Length = 641 Score = 36.2 bits (82), Expect = 0.072 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Frame = +3 Query: 342 EESPEKMGHGYLSDGLMGRAQERKKG-VPWTEDEHRRFLAGLEKLGKGDWRGISRHFVTT 518 EE E H Y DGL+ +A +R G WT +E + +E+ G DW+ I+ F+ Sbjct: 16 EEDVEMYDHDY--DGLLPKAGKRHLGKTRWTREEDEKLKKLVEQNGTEDWKVIA-SFLPN 72 Query: 519 RTPTQVASHAQK 554 RT Q QK Sbjct: 73 RTDVQCQHRWQK 84
>TERF2_HUMAN (Q15554) Telomeric repeat-binding factor 2 (TTAGGG repeat-binding| factor 2) (Telomeric DNA-binding protein) Length = 500 Score = 31.2 bits (69), Expect(2) = 0.073 Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = +3 Query: 426 WTEDEHRRFLAGLEKLGKGDWRGISRHF 509 WT +E AG++K G+G+W IS+++ Sbjct: 450 WTVEESEWVKAGVQKYGEGNWAAISKNY 477 Score = 23.9 bits (50), Expect(2) = 0.073 Identities = 9/22 (40%), Positives = 13/22 (59%) Frame = +2 Query: 350 PGEDGPRVPLGRTHGQGSGEEE 415 PGE P+VP G+ + EE+ Sbjct: 399 PGEKNPKVPKGKWNSSNGVEEK 420
>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-2) Length = 1558 Score = 35.0 bits (79), Expect = 0.16 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 21/81 (25%) Frame = +3 Query: 393 GRAQER--KKGVP------WTEDEHRRFLAGLEKLGKGDWR-------------GISRHF 509 G+A +R KK VP WTEDE +RF+ GL + GK +R I+ ++ Sbjct: 377 GKALQRLVKKPVPKLIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPSKETGELITFYY 436 Query: 510 VTTRTPTQVASHAQKYFLRQA 572 +TP +S A + RQA Sbjct: 437 YWKKTPEAASSRAHRRHRRQA 457
>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-related protein) Length = 1559 Score = 35.0 bits (79), Expect = 0.16 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 21/81 (25%) Frame = +3 Query: 393 GRAQER--KKGVP------WTEDEHRRFLAGLEKLGKGDWR-------------GISRHF 509 G+A +R KK VP WTEDE +RF+ GL + GK +R I+ ++ Sbjct: 376 GKALQRLVKKPVPKLIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 435 Query: 510 VTTRTPTQVASHAQKYFLRQA 572 +TP +S A + RQA Sbjct: 436 YWKKTPEAASSRAHRRHRRQA 456
>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-like protein) (Atrophin-1-related protein) Length = 1566 Score = 35.0 bits (79), Expect = 0.16 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 21/81 (25%) Frame = +3 Query: 393 GRAQER--KKGVP------WTEDEHRRFLAGLEKLGKGDWR-------------GISRHF 509 G+A +R KK VP WTEDE +RF+ GL + GK +R I+ ++ Sbjct: 377 GKALQRLVKKPVPKLIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 436 Query: 510 VTTRTPTQVASHAQKYFLRQA 572 +TP +S A + RQA Sbjct: 437 YWKKTPEAASSRAHRRHRRQA 457
>MYB_BOVIN (P46200) Myb proto-oncogene protein (C-myb)| Length = 640 Score = 33.5 bits (75), Expect = 0.47 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Frame = +3 Query: 342 EESPEKMGHGYLSDGLMGRAQERKKG-VPWTEDEHRRFLAGLEKLGKGDWRGISRHFVTT 518 +E E H Y DGL+ ++ +R G WT +E + +E+ G DW+ I+ +++ Sbjct: 16 DEDIEMCDHDY--DGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGTDDWKVIA-NYLPN 72 Query: 519 RTPTQVASHAQK 554 RT Q QK Sbjct: 73 RTDVQCQHRWQK 84
>MYB_MOUSE (P06876) Myb proto-oncogene protein (C-myb)| Length = 636 Score = 33.5 bits (75), Expect = 0.47 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Frame = +3 Query: 342 EESPEKMGHGYLSDGLMGRAQERKKG-VPWTEDEHRRFLAGLEKLGKGDWRGISRHFVTT 518 +E E H Y DGL+ ++ +R G WT +E + +E+ G DW+ I+ +++ Sbjct: 16 DEDIEMCDHDY--DGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGTDDWKVIA-NYLPN 72 Query: 519 RTPTQVASHAQK 554 RT Q QK Sbjct: 73 RTDVQCQHRWQK 84
>MYB1_NEUCR (O13493) Myb-like DNA binding protein myb-1| Length = 324 Score = 33.5 bits (75), Expect = 0.47 Identities = 16/48 (33%), Positives = 29/48 (60%) Frame = +3 Query: 390 MGRAQERKKGVPWTEDEHRRFLAGLEKLGKGDWRGISRHFVTTRTPTQ 533 M ++++G PW+ E +R + ++ LG G+W ++R + TRTP Q Sbjct: 1 MSNMPDQRRG-PWSAGEDQRLIKLVKDLGPGNWVNVAR-ILGTRTPKQ 46
>MYB_HUMAN (P10242) Myb proto-oncogene protein (C-myb)| Length = 640 Score = 33.1 bits (74), Expect = 0.61 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Frame = +3 Query: 342 EESPEKMGHGYLSDGLMGRAQERKKG-VPWTEDEHRRFLAGLEKLGKGDWRGISRHFVTT 518 +E E H Y DGL+ ++ +R G WT +E + +E+ G DW+ I+ +++ Sbjct: 16 DEDFEMCDHDY--DGLLPKSGKRHLGKTRWTREEDEKLKKLVEQNGTDDWKVIA-NYLPN 72 Query: 519 RTPTQVASHAQK 554 RT Q QK Sbjct: 73 RTDVQCQHRWQK 84
>APRR2_ARATH (Q6LA43) Two-component response regulator-like APRR2| (Pseudo-response regulator 2) (TOC2 protein) Length = 535 Score = 32.7 bits (73), Expect = 0.80 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%) Frame = +3 Query: 393 GRAQERKKGVPWTEDEHRRFLAGLEKLGKGD---WRGISRHFVTTRTPTQVASHAQKY 557 G RKK V WT + H++F+ +E+LG R + V T T VASH QK+ Sbjct: 291 GNKTSRKK-VDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVGTLTRHNVASHLQKF 347
>COT1_MOUSE (Q60632) COUP transcription factor 1 (COUP-TF1) (COUP-TF I)| Length = 422 Score = 31.6 bits (70), Expect = 1.8 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = +2 Query: 350 PGEDGPRVPLGRTHGQGSGEEERGSMD*GRAPEVPGRPG 466 PG P R G G+GE+++ P+ PG+PG Sbjct: 20 PGGPNPAAQAARGGGGGAGEQQQAGSGAPHTPQTPGQPG 58
>YD3A_SCHPO (Q10274) Hypothetical protein C13G7.10 in chromosome I| Length = 390 Score = 30.8 bits (68), Expect = 3.0 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 3/46 (6%) Frame = +3 Query: 408 RKKGVPWTEDEHRRFLAGLEKLGKGDWRGI---SRHFVTTRTPTQV 536 RK V WTE E L G + G G+W+ I R T R+P + Sbjct: 52 RKPRVKWTEKETNDLLRGCQIHGVGNWKKILLDERFHFTNRSPNDL 97
>MYB_XENLA (Q08759) Myb protein| Length = 624 Score = 30.8 bits (68), Expect = 3.0 Identities = 19/71 (26%), Positives = 32/71 (45%) Frame = +3 Query: 342 EESPEKMGHGYLSDGLMGRAQERKKGVPWTEDEHRRFLAGLEKLGKGDWRGISRHFVTTR 521 ++ E H Y DGL+ + + WT +E + +E+ G +W+ I+ F+ R Sbjct: 14 DDEIEMYEHDY--DGLLSKGKRHLGKTRWTREEDEKLKKLVEQNGTEEWKVIA-SFLPNR 70 Query: 522 TPTQVASHAQK 554 T Q QK Sbjct: 71 TDVQCQHRWQK 81
>RMT2_GIBZE (Q4IQK7) Arginine N-methyltransferase 2 (EC 2.1.1.-)| Length = 425 Score = 30.8 bits (68), Expect = 3.0 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = +3 Query: 420 VPWTEDEHRRFLAGLEKLGKGDWRGISRHFVT 515 V W E + ++GLEK G+G+W G+ R + T Sbjct: 389 VEWEESDVD--MSGLEKAGEGEWEGVRRRYWT 418
>MYB4_ORYSA (Q7XBH4) Myb-related protein Myb4 (OsMyb4) (Transcription factor| RLTR1) Length = 257 Score = 30.8 bits (68), Expect = 3.0 Identities = 12/31 (38%), Positives = 21/31 (67%) Frame = +3 Query: 411 KKGVPWTEDEHRRFLAGLEKLGKGDWRGISR 503 KKG PWT +E + +A +++ G G+WR + + Sbjct: 13 KKG-PWTPEEDKVLVAHIQRHGHGNWRALPK 42
>ARR10_ARATH (O49397) Two-component response regulator ARR10 (Receiver-like| protein 4) Length = 552 Score = 30.4 bits (67), Expect = 4.0 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%) Frame = +3 Query: 405 ERKKGVPWTEDEHRRFLAGLEKLGKGDWRGISRHF-----VTTRTPTQVASHAQKY 557 ++K V WT + H +FLA ++ LG R + + V T VASH QK+ Sbjct: 181 QKKPRVLWTHELHNKFLAAVDHLGVE--RAVPKKILDLMNVDKLTRENVASHLQKF 234
>MYBB_HUMAN (P10244) Myb-related protein B (B-Myb)| Length = 700 Score = 30.4 bits (67), Expect = 4.0 Identities = 16/63 (25%), Positives = 30/63 (47%) Frame = +3 Query: 378 SDGLMGRAQERKKGVPWTEDEHRRFLAGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKY 557 +D + ++ K V WT +E + A + + G+ DW+ ++ HF P + Q Sbjct: 18 TDSDVPEQRDSKCKVKWTHEEDEQLRALVRQFGQQDWKFLASHF-----PNRTDQQCQYR 72 Query: 558 FLR 566 +LR Sbjct: 73 WLR 75
>GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)| Length = 201 Score = 30.4 bits (67), Expect = 4.0 Identities = 14/30 (46%), Positives = 15/30 (50%) Frame = +3 Query: 78 GMARKCSSCGHNGHNSRTCSGHRGLESGGG 167 G C CG GH +R CS G SGGG Sbjct: 133 GGDNSCFKCGEPGHMARECSQGGGGYSGGG 162
>CPSF6_MOUSE (Q6NVF9) Cleavage and polyadenylation specificity factor 6| Length = 551 Score = 30.4 bits (67), Expect = 4.0 Identities = 20/51 (39%), Positives = 21/51 (41%) Frame = -3 Query: 515 GDEVPGDASPVAFPELLQAGQEPPVLVLSPWNPFLPLLSPAHESVREVPVA 363 GD PG A P P AGQ PP L P P P P V P+A Sbjct: 214 GDRFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLA 264
>CPSF6_HUMAN (Q16630) Cleavage and polyadenylation specificity factor 6| (Cleavage and polyadenylation specificity factor 68 kDa subunit) (CPSF 68 kDa subunit) (Pre-mRNA cleavage factor Im 68-kDa subunit) (Protein HPBRII-4/7) Length = 551 Score = 30.4 bits (67), Expect = 4.0 Identities = 20/51 (39%), Positives = 21/51 (41%) Frame = -3 Query: 515 GDEVPGDASPVAFPELLQAGQEPPVLVLSPWNPFLPLLSPAHESVREVPVA 363 GD PG A P P AGQ PP L P P P P V P+A Sbjct: 214 GDRFPGPAGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLA 264
>ARR12_ARATH (P62598) Two-component response regulator ARR12| Length = 596 Score = 30.0 bits (66), Expect = 5.2 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 6/67 (8%) Frame = +3 Query: 405 ERKKGVPWTEDEHRRFLAGLEKLG---KGDWRGISRHFVTTRTPTQVASHAQK---YFLR 566 ++K+ V WT + H++F+A + +LG + + V T VASH QK Y R Sbjct: 193 QKKQRVVWTVELHKKFVAAVNQLGYEKAMPKKILDLMNVEKLTRENVASHLQKFRLYLKR 252 Query: 567 QAGLAQK 587 +G+A + Sbjct: 253 ISGVANQ 259
>TERF1_MOUSE (P70371) Telomeric repeat-binding factor 1 (TTAGGG repeat-binding| factor 1) Length = 421 Score = 30.0 bits (66), Expect = 5.2 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = +3 Query: 408 RKKGVPWTEDEHRRFLAGLEKLGKGDWRGISRHF 509 R+K W +E R G++K G+G+W I H+ Sbjct: 364 RRKRQTWLWEEDRILKCGVKKYGEGNWAKILSHY 397
>ZCHC9_HUMAN (Q8N567) Zinc finger CCHC domain-containing protein 9| Length = 271 Score = 30.0 bits (66), Expect = 5.2 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Frame = +3 Query: 90 KCSSCGHNGHNSRTCSGH-RGL-ESGGGLRLFG 182 KC CG GH SR+C + +GL GGG +L G Sbjct: 185 KCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCG 217
>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding protein)| Length = 271 Score = 30.0 bits (66), Expect = 5.2 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = +3 Query: 87 RKCSSCGHNGHNSRTCSGHRGLESGGGLR 173 R C CG GH SR C +G SG G R Sbjct: 168 RTCYKCGDAGHISRDCPNGQGGYSGAGDR 196 Score = 30.0 bits (66), Expect = 5.2 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = +3 Query: 87 RKCSSCGHNGHNSRTCSGHRGLESGGGLR 173 R C CG GH SR C +G SG G R Sbjct: 140 RTCYKCGDAGHISRDCPNGQGGYSGAGDR 168 Score = 29.3 bits (64), Expect = 8.8 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +3 Query: 87 RKCSSCGHNGHNSRTCSGHRGLESG 161 RKC CG +GH SR C SG Sbjct: 196 RKCYKCGESGHMSRECPSAGSTGSG 220
>MYBB_MOUSE (P48972) Myb-related protein B (B-Myb)| Length = 704 Score = 29.6 bits (65), Expect = 6.7 Identities = 18/74 (24%), Positives = 35/74 (47%) Frame = +3 Query: 345 ESPEKMGHGYLSDGLMGRAQERKKGVPWTEDEHRRFLAGLEKLGKGDWRGISRHFVTTRT 524 E +++ + + L+ + R K V WT +E + A + + G+ DW+ ++ HF Sbjct: 8 EDLDELHYQDVDSDLLEQRDNRCK-VKWTHEEDEQLRALVRQFGQQDWKFLASHF----- 61 Query: 525 PTQVASHAQKYFLR 566 P + Q +LR Sbjct: 62 PNRTDQQCQYRWLR 75
>ATG23_KLULA (Q6CWA7) Autophagy-related protein 23| Length = 426 Score = 29.6 bits (65), Expect = 6.7 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 6/55 (10%) Frame = -3 Query: 512 DEVPGDASPVAF------PELLQAGQEPPVLVLSPWNPFLPLLSPAHESVREVPV 366 DE+ G P+ PELLQ G+ PP + LS S HES + P+ Sbjct: 371 DELNGKMQPIPIKSSAKTPELLQMGKSPPKVALSK-----EYASNLHESTEDFPL 420
>ARR21_ARATH (Q9LYP5) Putative two-component response regulator ARR21| Length = 592 Score = 29.6 bits (65), Expect = 6.7 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 5/76 (6%) Frame = +3 Query: 357 KMGHGYLSDGLMGRAQERKKGVPWTEDEHRRFLAGLEKLGKG---DWRGISRHFVTTRTP 527 K G DG +KK + WT+ H FL + +G + ++ V T Sbjct: 204 KPNGGPSDDGESMSQPAKKKKIQWTDSLHDLFLQAIRHIGLDKAVPKKILAFMSVPYLTR 263 Query: 528 TQVASHAQKY--FLRQ 569 VASH QKY FLR+ Sbjct: 264 ENVASHLQKYRIFLRR 279
>YJIE_ECOLI (P39376) Putative HTH-type transcriptional regulator yjiE| Length = 303 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = +2 Query: 11 EXPTNYLLLLQPSWFPTLCAVDRHGEEMLEL-RPQWPQL 124 E P +++ L + FP +CA D HGE + L +P +P L Sbjct: 161 EAPFDHIRLFESQLFP-VCASDEHGEALFNLAQPHFPLL 198
>ARR19_ARATH (Q9M9B9) Putative two-component response regulator ARR19| Length = 407 Score = 29.3 bits (64), Expect = 8.8 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 7/57 (12%) Frame = +3 Query: 408 RKKGVPWTEDEHRRFLAGLEKLG---KGDWRGISRHFVTTR----TPTQVASHAQKY 557 RK + WTE+ H++FL +E +G K + + + R T + VASH QK+ Sbjct: 214 RKPRMTWTEELHQKFLEAIEIIGGIEKANPKVLVECLQEMRIEGITRSNVASHLQKH 270
>YR029_MIMIV (Q5UPA8) Hypothetical protein R29| Length = 108 Score = 29.3 bits (64), Expect = 8.8 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%) Frame = +3 Query: 78 GMARKCSSCGHNGH----NSRTCSGHRGLESGGGLRLF 179 G R+CS+CGH+ H N HR +ES LR F Sbjct: 55 GRIRRCSNCGHDLHGGIANKIETVVHRDIESDKMLRRF 92 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,269,786 Number of Sequences: 219361 Number of extensions: 1145587 Number of successful extensions: 5420 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 4733 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5402 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
