ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal23j02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_189680.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 732 Score = 198 bits (100), Expect = 1e-47 Identities = 202/236 (85%) Strand = Plus / Plus Query: 354 gagaagatgggccacgggtacctctcggacggactcatgggcagggctcaggagaggaag 413 |||||||||| | ||||||||||||| || || ||||||| || ||||||||||||||| Sbjct: 304 gagaagatggccaacgggtacctctccgatggcctcatggcgagagctcaggagaggaag 363 Query: 414 aaaggggttccatggactgaggacgagcaccggaggttcctggccggcctggagaagctc 473 || || |||||||||||||| || |||||| ||| ||||||| || || ||||||||| Sbjct: 364 aagggtgttccatggactgaagaggagcacaggaaattcctggtagggctcgagaagctc 423 Query: 474 gggaaaggcgactggcgaggcatctcccggcacttcgtcaccacgcgcacgccgacgcag 533 ||||||||||||||||| ||||| ||||||||||||||||| || | || ||||||||| Sbjct: 424 gggaaaggcgactggcgcggcatttcccggcacttcgtcacgacaagaacaccgacgcag 483 Query: 534 gtggccagccacgcccaaaagtacttcctccggcaggccggcctcgcgcagaagaa 589 ||||||||||| ||||| ||||| |||||| ||||| | ||||| |||||||||| Sbjct: 484 gtggccagccatgcccagaagtatttcctcaggcagagcagcctcacgcagaagaa 539 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Plus Query: 169 tgaggctgttcggggtgcagctgcaagtgggcgctgcgcctctcaagaagagcttcagta 228 ||||| |||||||||||||| |||| || |||| ||||||||| |||||| ||||||| | Sbjct: 116 tgaggttgttcggggtgcagttgcacgtcggcggtgcgcctctgaagaagtgcttcagca 175 Query: 229 tggagtgcctgtcgtcg 245 |||||||||| |||||| Sbjct: 176 tggagtgcctatcgtcg 192 Score = 67.9 bits (34), Expect = 4e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 81 atggcgaggaaatgctcgagctgcggccacaatggccacaactcgaggacctgcagcggc 140 ||||| ||||||||||| |||||||| |||||||||||||||| ||||| |||| |||| Sbjct: 1 atggccaggaaatgctccagctgcgggaacaatggccacaactccaggacttgcaccggc 60 Query: 141 ca 142 || Sbjct: 61 ca 62
>dbj|AK062109.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-B07, full insert sequence Length = 1476 Score = 198 bits (100), Expect = 1e-47 Identities = 202/236 (85%) Strand = Plus / Plus Query: 354 gagaagatgggccacgggtacctctcggacggactcatgggcagggctcaggagaggaag 413 |||||||||| | ||||||||||||| || || ||||||| || ||||||||||||||| Sbjct: 628 gagaagatggccaacgggtacctctccgatggcctcatggcgagagctcaggagaggaag 687 Query: 414 aaaggggttccatggactgaggacgagcaccggaggttcctggccggcctggagaagctc 473 || || |||||||||||||| || |||||| ||| ||||||| || || ||||||||| Sbjct: 688 aagggtgttccatggactgaagaggagcacaggaaattcctggtagggctcgagaagctc 747 Query: 474 gggaaaggcgactggcgaggcatctcccggcacttcgtcaccacgcgcacgccgacgcag 533 ||||||||||||||||| ||||| ||||||||||||||||| || | || ||||||||| Sbjct: 748 gggaaaggcgactggcgcggcatttcccggcacttcgtcacgacaagaacaccgacgcag 807 Query: 534 gtggccagccacgcccaaaagtacttcctccggcaggccggcctcgcgcagaagaa 589 ||||||||||| ||||| ||||| |||||| ||||| | ||||| |||||||||| Sbjct: 808 gtggccagccatgcccagaagtatttcctcaggcagagcagcctcacgcagaagaa 863 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Plus Query: 169 tgaggctgttcggggtgcagctgcaagtgggcgctgcgcctctcaagaagagcttcagta 228 ||||| |||||||||||||| |||| || |||| ||||||||| |||||| ||||||| | Sbjct: 440 tgaggttgttcggggtgcagttgcacgtcggcggtgcgcctctgaagaagtgcttcagca 499 Query: 229 tggagtgcctgtcgtcg 245 |||||||||| |||||| Sbjct: 500 tggagtgcctatcgtcg 516 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 79 gcatggcgaggaaatgctcgagctgcggccacaatggccacaactcgaggacctgcagcg 138 ||||||| ||||||||||| |||||||| |||||||||||||||| ||||| |||| || Sbjct: 323 gcatggccaggaaatgctccagctgcgggaacaatggccacaactccaggacttgcaccg 382 Query: 139 gcca 142 |||| Sbjct: 383 gcca 386
>ref|XM_476082.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 864 Score = 186 bits (94), Expect = 6e-44 Identities = 169/194 (87%) Strand = Plus / Plus Query: 369 gggtacctctcggacggactcatgggcagggctcaggagaggaagaaaggggttccatgg 428 ||||||||||| || || |||||||| |||| |||||||||||||||||| ||||||||| Sbjct: 316 gggtacctctctgatgggctcatgggaagggttcaggagaggaagaaaggagttccatgg 375 Query: 429 actgaggacgagcaccggaggttcctggccggcctggagaagctcgggaaaggcgactgg 488 |||||||| || |||| || |||||| |||||||| || |||||||| |||||||||||| Sbjct: 376 actgaggaagaacaccagatgttcctcgccggccttgacaagctcggaaaaggcgactgg 435 Query: 489 cgaggcatctcccggcacttcgtcaccacgcgcacgccgacgcaggtggccagccacgcc 548 || ||||| || |||||||||||||| || || || || |||||||| |||||||| ||| Sbjct: 436 cggggcatttctcggcacttcgtcactacccggactccaacgcaggtcgccagccatgcc 495 Query: 549 caaaagtacttcct 562 || ||||||||||| Sbjct: 496 cagaagtacttcct 509 Score = 54.0 bits (27), Expect = 5e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 81 atggcgaggaaatgctcgagctgcggccacaatggccacaactcgaggacctgcagcggc 140 ||||| ||||| ||||| ||||| || |||||||||||||||| ||||| ||||| ||| Sbjct: 1 atggctaggaagtgctctagctgtgggaacaatggccacaactccaggacttgcagtggc 60 Query: 141 cacagag 147 || |||| Sbjct: 61 caaagag 67
>dbj|AK065594.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029P13, full insert sequence Length = 3358 Score = 186 bits (94), Expect = 6e-44 Identities = 169/194 (87%) Strand = Plus / Plus Query: 369 gggtacctctcggacggactcatgggcagggctcaggagaggaagaaaggggttccatgg 428 ||||||||||| || || |||||||| |||| |||||||||||||||||| ||||||||| Sbjct: 2229 gggtacctctctgatgggctcatgggaagggttcaggagaggaagaaaggagttccatgg 2288 Query: 429 actgaggacgagcaccggaggttcctggccggcctggagaagctcgggaaaggcgactgg 488 |||||||| || |||| || |||||| |||||||| || |||||||| |||||||||||| Sbjct: 2289 actgaggaagaacaccagatgttcctcgccggccttgacaagctcggaaaaggcgactgg 2348 Query: 489 cgaggcatctcccggcacttcgtcaccacgcgcacgccgacgcaggtggccagccacgcc 548 || ||||| || |||||||||||||| || || || || |||||||| |||||||| ||| Sbjct: 2349 cggggcatttctcggcacttcgtcactacccggactccaacgcaggtcgccagccatgcc 2408 Query: 549 caaaagtacttcct 562 || ||||||||||| Sbjct: 2409 cagaagtacttcct 2422 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 80 catggcgaggaaatgctcgagctgcggccacaatggccacaactcgaggacctgcagcgg 139 |||||| ||||| ||||| ||||| || |||||||||||||||| ||||| ||||| || Sbjct: 1913 catggctaggaagtgctctagctgtgggaacaatggccacaactccaggacttgcagtgg 1972 Query: 140 ccacagag 147 ||| |||| Sbjct: 1973 ccaaagag 1980
>dbj|AK061427.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-H01, full insert sequence Length = 1149 Score = 186 bits (94), Expect = 6e-44 Identities = 169/194 (87%) Strand = Plus / Plus Query: 369 gggtacctctcggacggactcatgggcagggctcaggagaggaagaaaggggttccatgg 428 ||||||||||| || || |||||||| |||| |||||||||||||||||| ||||||||| Sbjct: 431 gggtacctctctgatgggctcatgggaagggttcaggagaggaagaaaggagttccatgg 490 Query: 429 actgaggacgagcaccggaggttcctggccggcctggagaagctcgggaaaggcgactgg 488 |||||||| || |||| || |||||| |||||||| || |||||||| |||||||||||| Sbjct: 491 actgaggaagaacaccagatgttcctcgccggccttgacaagctcggaaaaggcgactgg 550 Query: 489 cgaggcatctcccggcacttcgtcaccacgcgcacgccgacgcaggtggccagccacgcc 548 || ||||| || |||||||||||||| || || || || |||||||| |||||||| ||| Sbjct: 551 cggggcatttctcggcacttcgtcactacccggactccaacgcaggtcgccagccatgcc 610 Query: 549 caaaagtacttcct 562 || ||||||||||| Sbjct: 611 cagaagtacttcct 624 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 80 catggcgaggaaatgctcgagctgcggccacaatggccacaactcgaggacctgcagcgg 139 |||||| ||||| ||||| ||||| || |||||||||||||||| ||||| ||||| || Sbjct: 115 catggctaggaagtgctctagctgtgggaacaatggccacaactccaggacttgcagtgg 174 Query: 140 ccacagag 147 ||| |||| Sbjct: 175 ccaaagag 182
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 147 bits (74), Expect = 5e-32 Identities = 146/170 (85%) Strand = Plus / Minus Query: 420 gttccatggactgaggacgagcaccggaggttcctggccggcctggagaagctcgggaaa 479 |||||||||||||| || |||||| ||| ||||||| || || ||||||||||||||| Sbjct: 4971379 gttccatggactgaagaggagcacaggaaattcctggtagggctcgagaagctcgggaaa 4971320 Query: 480 ggcgactggcgaggcatctcccggcacttcgtcaccacgcgcacgccgacgcaggtggcc 539 ||||||||||| ||||| ||||||||||||||||| || | || ||||||||||||||| Sbjct: 4971319 ggcgactggcgcggcatttcccggcacttcgtcacgacaagaacaccgacgcaggtggcc 4971260 Query: 540 agccacgcccaaaagtacttcctccggcaggccggcctcgcgcagaagaa 589 ||||| ||||| ||||| |||||| ||||| | ||||| |||||||||| Sbjct: 4971259 agccatgcccagaagtatttcctcaggcagagcagcctcacgcagaagaa 4971210 Score = 99.6 bits (50), Expect = 1e-17 Identities = 116/138 (84%) Strand = Plus / Plus Query: 432 gaggacgagcaccggaggttcctggccggcctggagaagctcgggaaaggcgactggcga 491 ||||| ||||||||| |||||| | ||| || |||||||| || || |||||||||||| Sbjct: 23757544 gaggaggagcaccggctgttcctcgtcgggctcgagaagctgggcaagggcgactggcga 23757603 Query: 492 ggcatctcccggcacttcgtcaccacgcgcacgccgacgcaggtggccagccacgcccaa 551 |||||||||||| || |||||| ||| | || ||||| ||||| |||||||||||||| Sbjct: 23757604 ggcatctcccggagctacgtcacgacgaggaccccgacccaggtcgccagccacgcccag 23757663 Query: 552 aagtacttcctccggcag 569 |||| ||||||| ||||| Sbjct: 23757664 aagttcttcctcaggcag 23757681 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 169 tgaggctgttcggggtgcagctgcaagtgggcgctgcgcctctcaagaagagcttcagta 228 ||||| |||||||||||||| |||| || |||| ||||||||| |||||| ||||||| | Sbjct: 4972118 tgaggttgttcggggtgcagttgcacgtcggcggtgcgcctctgaagaagtgcttcagca 4972059 Query: 229 tggagtgcctgtcgtcg 245 |||||||||| |||||| Sbjct: 4972058 tggagtgcctatcgtcg 4972042 Score = 73.8 bits (37), Expect = 6e-10 Identities = 52/57 (91%) Strand = Plus / Plus Query: 516 acgcgcacgccgacgcaggtggccagccacgcccaaaagtacttcctccggcaggcc 572 ||||| ||||||||||||||||| |||||||| || ||||||||| ||||||||||| Sbjct: 37352311 acgcggacgccgacgcaggtggcgagccacgcgcagaagtacttcatccggcaggcc 37352367 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 79 gcatggcgaggaaatgctcgagctgcggccacaatggccacaactcgaggacctgcagcg 138 ||||||| ||||||||||| |||||||| |||||||||||||||| ||||| |||| || Sbjct: 4972235 gcatggccaggaaatgctccagctgcgggaacaatggccacaactccaggacttgcaccg 4972176 Query: 139 gcca 142 |||| Sbjct: 4972175 gcca 4972172 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 522 acgccgacgcaggtggccagccacgcccaaaagtacttcctccg 565 |||||||||||||||||||||||||| || ||||||||| |||| Sbjct: 36757847 acgccgacgcaggtggccagccacgcgcagaagtacttcatccg 36757804 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 462 ctggagaagctcgggaaaggcgactggcgaggcatctcccggcacttcgtcaccacgcgc 521 ||||| ||| |||| || || |||||||| ||||||| || ||||||||| | |||| Sbjct: 18752098 ctggacaagttcggcaagggggactggcggagcatctcgcgcaacttcgtcatctcgcgg 18752157 Query: 522 acgccgacgcaggtggccagccacgcccaaaagtacttcctccg 565 ||||| ||||||||||| |||||||| || ||||||||| |||| Sbjct: 18752158 acgccaacgcaggtggcgagccacgcgcagaagtacttcatccg 18752201 Score = 60.0 bits (30), Expect = 9e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 354 gagaagatgggccacgggtacctctcggacggactcatgggcagggctcaggagaggaag 413 |||||||||| | ||||||||||||| || || ||||||| || ||||||||||||||| Sbjct: 4971930 gagaagatggccaacgggtacctctccgatggcctcatggcgagagctcaggagaggaag 4971871 Query: 414 aa 415 || Sbjct: 4971870 aa 4971869 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 402 caggagaggaagaaaggggttccatggactgaggacgagcac 443 ||||||||||||||||| || |||||||| ||||| |||||| Sbjct: 2282566 caggagaggaagaaaggcgtgccatggacggaggaggagcac 2282525 Score = 44.1 bits (22), Expect = 0.51 Identities = 37/42 (88%) Strand = Plus / Minus Query: 402 caggagaggaagaaaggggttccatggactgaggacgagcac 443 ||||||||||||||||| || || ||||| ||||| |||||| Sbjct: 36758083 caggagaggaagaaaggcgtcccgtggacggaggaggagcac 36758042 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 gggctgaggctgttcggggtgcag 188 ||||||||||||||||| |||||| Sbjct: 23756808 gggctgaggctgttcggagtgcag 23756831
>dbj|AP002746.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0671B11 Length = 168372 Score = 147 bits (74), Expect = 5e-32 Identities = 146/170 (85%) Strand = Plus / Minus Query: 420 gttccatggactgaggacgagcaccggaggttcctggccggcctggagaagctcgggaaa 479 |||||||||||||| || |||||| ||| ||||||| || || ||||||||||||||| Sbjct: 71832 gttccatggactgaagaggagcacaggaaattcctggtagggctcgagaagctcgggaaa 71773 Query: 480 ggcgactggcgaggcatctcccggcacttcgtcaccacgcgcacgccgacgcaggtggcc 539 ||||||||||| ||||| ||||||||||||||||| || | || ||||||||||||||| Sbjct: 71772 ggcgactggcgcggcatttcccggcacttcgtcacgacaagaacaccgacgcaggtggcc 71713 Query: 540 agccacgcccaaaagtacttcctccggcaggccggcctcgcgcagaagaa 589 ||||| ||||| ||||| |||||| ||||| | ||||| |||||||||| Sbjct: 71712 agccatgcccagaagtatttcctcaggcagagcagcctcacgcagaagaa 71663 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 169 tgaggctgttcggggtgcagctgcaagtgggcgctgcgcctctcaagaagagcttcagta 228 ||||| |||||||||||||| |||| || |||| ||||||||| |||||| ||||||| | Sbjct: 72571 tgaggttgttcggggtgcagttgcacgtcggcggtgcgcctctgaagaagtgcttcagca 72512 Query: 229 tggagtgcctgtcgtcg 245 |||||||||| |||||| Sbjct: 72511 tggagtgcctatcgtcg 72495 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 79 gcatggcgaggaaatgctcgagctgcggccacaatggccacaactcgaggacctgcagcg 138 ||||||| ||||||||||| |||||||| |||||||||||||||| ||||| |||| || Sbjct: 72688 gcatggccaggaaatgctccagctgcgggaacaatggccacaactccaggacttgcaccg 72629 Query: 139 gcca 142 |||| Sbjct: 72628 gcca 72625 Score = 60.0 bits (30), Expect = 9e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 354 gagaagatgggccacgggtacctctcggacggactcatgggcagggctcaggagaggaag 413 |||||||||| | ||||||||||||| || || ||||||| || ||||||||||||||| Sbjct: 72383 gagaagatggccaacgggtacctctccgatggcctcatggcgagagctcaggagaggaag 72324 Query: 414 aa 415 || Sbjct: 72323 aa 72322
>dbj|AK102403.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092K06, full insert sequence Length = 1907 Score = 147 bits (74), Expect = 5e-32 Identities = 146/170 (85%) Strand = Plus / Plus Query: 420 gttccatggactgaggacgagcaccggaggttcctggccggcctggagaagctcgggaaa 479 |||||||||||||| || |||||| ||| ||||||| || || ||||||||||||||| Sbjct: 994 gttccatggactgaagaggagcacaggaaattcctggtagggctcgagaagctcgggaaa 1053 Query: 480 ggcgactggcgaggcatctcccggcacttcgtcaccacgcgcacgccgacgcaggtggcc 539 ||||||||||| ||||| ||||||||||||||||| || | || ||||||||||||||| Sbjct: 1054 ggcgactggcgcggcatttcccggcacttcgtcacgacaagaacaccgacgcaggtggcc 1113 Query: 540 agccacgcccaaaagtacttcctccggcaggccggcctcgcgcagaagaa 589 ||||| ||||| ||||| |||||| ||||| | ||||| |||||||||| Sbjct: 1114 agccatgcccagaagtatttcctcaggcagagcagcctcacgcagaagaa 1163 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Plus Query: 169 tgaggctgttcggggtgcagctgcaagtgggcgctgcgcctctcaagaagagcttcagta 228 ||||| |||||||||||||| |||| || |||| ||||||||| |||||| ||||||| | Sbjct: 255 tgaggttgttcggggtgcagttgcacgtcggcggtgcgcctctgaagaagtgcttcagca 314 Query: 229 tggagtgcctgtcgtcg 245 |||||||||| |||||| Sbjct: 315 tggagtgcctatcgtcg 331 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 79 gcatggcgaggaaatgctcgagctgcggccacaatggccacaactcgaggacctgcagcg 138 ||||||| ||||||||||| |||||||| |||||||||||||||| ||||| |||| || Sbjct: 138 gcatggccaggaaatgctccagctgcgggaacaatggccacaactccaggacttgcaccg 197 Query: 139 gcca 142 |||| Sbjct: 198 gcca 201 Score = 60.0 bits (30), Expect = 9e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 354 gagaagatgggccacgggtacctctcggacggactcatgggcagggctcaggagaggaag 413 |||||||||| | ||||||||||||| || || ||||||| || ||||||||||||||| Sbjct: 443 gagaagatggccaacgggtacctctccgatggcctcatggcgagagctcaggagaggaag 502 Query: 414 aa 415 || Sbjct: 503 aa 504
>gb|AC132486.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0473H02, complete sequence Length = 141027 Score = 133 bits (67), Expect = 7e-28 Identities = 124/143 (86%) Strand = Plus / Minus Query: 420 gttccatggactgaggacgagcaccggaggttcctggccggcctggagaagctcgggaaa 479 ||||||||||||||||| || |||| || |||||| |||||||| || |||||||| ||| Sbjct: 111821 gttccatggactgaggaagaacaccagatgttcctcgccggccttgacaagctcggaaaa 111762 Query: 480 ggcgactggcgaggcatctcccggcacttcgtcaccacgcgcacgccgacgcaggtggcc 539 ||||||||||| ||||| || |||||||||||||| || || || || |||||||| ||| Sbjct: 111761 ggcgactggcggggcatttctcggcacttcgtcactacccggactccaacgcaggtcgcc 111702 Query: 540 agccacgcccaaaagtacttcct 562 ||||| ||||| ||||||||||| Sbjct: 111701 agccatgcccagaagtacttcct 111679 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 369 gggtacctctcggacggactcatgggcagggctcaggagaggaagaaagg 418 ||||||||||| || || |||||||| |||| |||||||||||||||||| Sbjct: 112215 gggtacctctctgatgggctcatgggaagggttcaggagaggaagaaagg 112166 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 80 catggcgaggaaatgctcgagctgcggccacaatggccacaactcgaggacctgcagcgg 139 |||||| ||||| ||||| ||||| || |||||||||||||||| ||||| ||||| || Sbjct: 112531 catggctaggaagtgctctagctgtgggaacaatggccacaactccaggacttgcagtgg 112472 Query: 140 ccacagag 147 ||| |||| Sbjct: 112471 ccaaagag 112464
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 133 bits (67), Expect = 7e-28 Identities = 124/143 (86%) Strand = Plus / Minus Query: 420 gttccatggactgaggacgagcaccggaggttcctggccggcctggagaagctcgggaaa 479 ||||||||||||||||| || |||| || |||||| |||||||| || |||||||| ||| Sbjct: 5789447 gttccatggactgaggaagaacaccagatgttcctcgccggccttgacaagctcggaaaa 5789388 Query: 480 ggcgactggcgaggcatctcccggcacttcgtcaccacgcgcacgccgacgcaggtggcc 539 ||||||||||| ||||| || |||||||||||||| || || || || |||||||| ||| Sbjct: 5789387 ggcgactggcggggcatttctcggcacttcgtcactacccggactccaacgcaggtcgcc 5789328 Query: 540 agccacgcccaaaagtacttcct 562 ||||| ||||| ||||||||||| Sbjct: 5789327 agccatgcccagaagtacttcct 5789305 Score = 107 bits (54), Expect = 4e-20 Identities = 123/146 (84%) Strand = Plus / Minus Query: 420 gttccatggactgaggacgagcaccggaggttcctggccggcctggagaagctcgggaaa 479 |||||||||| ||| | |||||| || ||||||||| || ||||||||||| || || Sbjct: 29127722 gttccatggagcgagcaagagcacaggctgttcctggcggggctggagaagctgggcaag 29127663 Query: 480 ggcgactggcgaggcatctcccggcacttcgtcaccacgcgcacgccgacgcaggtggcc 539 |||||||||||||||||||||||| |||||||||||| | ||||| || ||||| ||| Sbjct: 29127662 ggcgactggcgaggcatctcccggagcttcgtcaccaccaggacgcccacccaggtcgcc 29127603 Query: 540 agccacgcccaaaagtacttcctccg 565 ||||| ||||| |||| ||||||||| Sbjct: 29127602 agccatgcccagaagttcttcctccg 29127577 Score = 67.9 bits (34), Expect = 4e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 522 acgccgacgcaggtggccagccacgcccaaaagtacttcctccggc 567 |||||||||||||||||||||||||| || ||||||||| |||||| Sbjct: 21937270 acgccgacgcaggtggccagccacgcgcagaagtacttcatccggc 21937225 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 369 gggtacctctcggacggactcatgggcagggctcaggagaggaagaaagg 418 ||||||||||| || || |||||||| |||| |||||||||||||||||| Sbjct: 5789841 gggtacctctctgatgggctcatgggaagggttcaggagaggaagaaagg 5789792 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 80 catggcgaggaaatgctcgagctgcggccacaatggccacaactcgaggacctgcagcgg 139 |||||| ||||| ||||| ||||| || |||||||||||||||| ||||| ||||| || Sbjct: 5790157 catggctaggaagtgctctagctgtgggaacaatggccacaactccaggacttgcagtgg 5790098 Query: 140 ccacagag 147 ||| |||| Sbjct: 5790097 ccaaagag 5790090 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Minus Query: 516 acgcgcacgccgacgcaggtggccagccacgcccaaaagtacttc 560 ||||| || |||||||||||||| |||||||| ||||||| |||| Sbjct: 21505080 acgcggaccccgacgcaggtggcgagccacgcacaaaagttcttc 21505036 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Minus Query: 157 gcggcggcgggctgaggctgttcggggtgcagct 190 |||||| |||||| ||||||||||||||||||| Sbjct: 29128083 gcggcgccgggctacggctgttcggggtgcagct 29128050
>ref|XM_475998.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 936 Score = 131 bits (66), Expect = 3e-27 Identities = 138/162 (85%) Strand = Plus / Plus Query: 404 ggagaggaagaaaggggttccatggactgaggacgagcaccggaggttcctggccggcct 463 ||||||||||||||| |||||||||| ||| | |||||| || ||||||||| || || Sbjct: 327 ggagaggaagaaaggagttccatggagcgagcaagagcacaggctgttcctggcggggct 386 Query: 464 ggagaagctcgggaaaggcgactggcgaggcatctcccggcacttcgtcaccacgcgcac 523 ||||||||| || || |||||||||||||||||||||||| |||||||||||| | || Sbjct: 387 ggagaagctgggcaagggcgactggcgaggcatctcccggagcttcgtcaccaccaggac 446 Query: 524 gccgacgcaggtggccagccacgcccaaaagtacttcctccg 565 ||| || ||||| |||||||| ||||| |||| ||||||||| Sbjct: 447 gcccacccaggtcgccagccatgcccagaagttcttcctccg 488 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Plus Query: 157 gcggcggcgggctgaggctgttcggggtgcagct 190 |||||| |||||| ||||||||||||||||||| Sbjct: 71 gcggcgccgggctacggctgttcggggtgcagct 104
>dbj|AK068595.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154K05, full insert sequence Length = 1104 Score = 131 bits (66), Expect = 3e-27 Identities = 138/162 (85%) Strand = Plus / Plus Query: 404 ggagaggaagaaaggggttccatggactgaggacgagcaccggaggttcctggccggcct 463 ||||||||||||||| |||||||||| ||| | |||||| || ||||||||| || || Sbjct: 369 ggagaggaagaaaggagttccatggagcgagcaagagcacaggctgttcctggcggggct 428 Query: 464 ggagaagctcgggaaaggcgactggcgaggcatctcccggcacttcgtcaccacgcgcac 523 ||||||||| || || |||||||||||||||||||||||| |||||||||||| | || Sbjct: 429 ggagaagctgggcaagggcgactggcgaggcatctcccggagcttcgtcaccaccaggac 488 Query: 524 gccgacgcaggtggccagccacgcccaaaagtacttcctccg 565 ||| || ||||| |||||||| ||||| |||| ||||||||| Sbjct: 489 gcccacccaggtcgccagccatgcccagaagttcttcctccg 530 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Plus Query: 157 gcggcggcgggctgaggctgttcggggtgcagct 190 |||||| |||||| ||||||||||||||||||| Sbjct: 113 gcggcgccgggctacggctgttcggggtgcagct 146
>dbj|AK059813.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-B05, full insert sequence Length = 1128 Score = 131 bits (66), Expect = 3e-27 Identities = 138/162 (85%) Strand = Plus / Plus Query: 404 ggagaggaagaaaggggttccatggactgaggacgagcaccggaggttcctggccggcct 463 ||||||||||||||| |||||||||| ||| | |||||| || ||||||||| || || Sbjct: 430 ggagaggaagaaaggagttccatggagcgagcaagagcacaggctgttcctggcggggct 489 Query: 464 ggagaagctcgggaaaggcgactggcgaggcatctcccggcacttcgtcaccacgcgcac 523 ||||||||| || || |||||||||||||||||||||||| |||||||||||| | || Sbjct: 490 ggagaagctgggcaagggcgactggcgaggcatctcccggagcttcgtcaccaccaggac 549 Query: 524 gccgacgcaggtggccagccacgcccaaaagtacttcctccg 565 ||| || ||||| |||||||| ||||| |||| ||||||||| Sbjct: 550 gcccacccaggtcgccagccatgcccagaagttcttcctccg 591 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Plus Query: 157 gcggcggcgggctgaggctgttcggggtgcagct 190 |||||| |||||| ||||||||||||||||||| Sbjct: 174 gcggcgccgggctacggctgttcggggtgcagct 207
>ref|NM_192660.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 906 Score = 127 bits (64), Expect = 4e-26 Identities = 142/168 (84%) Strand = Plus / Plus Query: 402 caggagaggaagaaaggggttccatggactgaggacgagcaccggaggttcctggccggc 461 ||||||||||||||||| ||||| |||| ||||| ||||||||| |||||| | ||| Sbjct: 379 caggagaggaagaaaggagttccgtggagcgaggaggagcaccggctgttcctcgtcggg 438 Query: 462 ctggagaagctcgggaaaggcgactggcgaggcatctcccggcacttcgtcaccacgcgc 521 || |||||||| || || |||||||||||||||||||||||| || |||||| ||| | Sbjct: 439 ctcgagaagctgggcaagggcgactggcgaggcatctcccggagctacgtcacgacgagg 498 Query: 522 acgccgacgcaggtggccagccacgcccaaaagtacttcctccggcag 569 || ||||| ||||| |||||||||||||| |||| ||||||| ||||| Sbjct: 499 accccgacccaggtcgccagccacgcccagaagttcttcctcaggcag 546 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 gggctgaggctgttcggggtgcag 188 ||||||||||||||||| |||||| Sbjct: 127 gggctgaggctgttcggagtgcag 150
>dbj|AK103432.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033128P13, full insert sequence Length = 1490 Score = 127 bits (64), Expect = 4e-26 Identities = 142/168 (84%) Strand = Plus / Plus Query: 402 caggagaggaagaaaggggttccatggactgaggacgagcaccggaggttcctggccggc 461 ||||||||||||||||| ||||| |||| ||||| ||||||||| |||||| | ||| Sbjct: 604 caggagaggaagaaaggagttccgtggagcgaggaggagcaccggctgttcctcgtcggg 663 Query: 462 ctggagaagctcgggaaaggcgactggcgaggcatctcccggcacttcgtcaccacgcgc 521 || |||||||| || || |||||||||||||||||||||||| || |||||| ||| | Sbjct: 664 ctcgagaagctgggcaagggcgactggcgaggcatctcccggagctacgtcacgacgagg 723 Query: 522 acgccgacgcaggtggccagccacgcccaaaagtacttcctccggcag 569 || ||||| ||||| |||||||||||||| |||| ||||||| ||||| Sbjct: 724 accccgacccaggtcgccagccacgcccagaagttcttcctcaggcag 771 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 gggctgaggctgttcggggtgcag 188 ||||||||||||||||| |||||| Sbjct: 352 gggctgaggctgttcggagtgcag 375
>dbj|AK061500.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-D10, full insert sequence Length = 1162 Score = 127 bits (64), Expect = 4e-26 Identities = 142/168 (84%) Strand = Plus / Plus Query: 402 caggagaggaagaaaggggttccatggactgaggacgagcaccggaggttcctggccggc 461 ||||||||||||||||| ||||| |||| ||||| ||||||||| |||||| | ||| Sbjct: 370 caggagaggaagaaaggagttccgtggagcgaggaggagcaccggctgttcctcgtcggg 429 Query: 462 ctggagaagctcgggaaaggcgactggcgaggcatctcccggcacttcgtcaccacgcgc 521 || |||||||| || || |||||||||||||||||||||||| || |||||| ||| | Sbjct: 430 ctcgagaagctgggcaagggcgactggcgaggcatctcccggagctacgtcacgacgagg 489 Query: 522 acgccgacgcaggtggccagccacgcccaaaagtacttcctccggcag 569 || ||||| ||||| |||||||||||||| |||| ||||||| ||||| Sbjct: 490 accccgacccaggtcgccagccacgcccagaagttcttcctcaggcag 537 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 gggctgaggctgttcggggtgcag 188 ||||||||||||||||| |||||| Sbjct: 118 gggctgaggctgttcggagtgcag 141
>ref|NM_197754.1| Oryza sativa (japonica cultivar-group) putative Myb-related protein (OSJNBb0089A17.5), mRNA Length = 1207 Score = 119 bits (60), Expect = 1e-23 Identities = 141/168 (83%) Strand = Plus / Plus Query: 402 caggagaggaagaaaggggttccatggactgaggacgagcaccggaggttcctggccggc 461 |||||||||||||||||||| |||||||||||||| |||||| || ||||||| || Sbjct: 385 caggagaggaagaaaggggtaccatggactgaggaggagcacaagaaattcctggaaggg 444 Query: 462 ctggagaagctcgggaaaggcgactggcgaggcatctcccggcacttcgtcaccacgcgc 521 ||| | |||| |||||||| |||||| ||||||||||| | |||| || |||| | Sbjct: 445 ctgaggcagctggggaaaggggactggagaggcatctccaagaactttgtgaccagcagg 504 Query: 522 acgccgacgcaggtggccagccacgcccaaaagtacttcctccggcag 569 ||| |||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 505 acggcgactcaggtggccagccacgcccagaagtacttcctccggcag 552
>emb|AJ303355.1|HVU303355 Hordeum vulgare cv. Haisa mRNA for MCB2 protein Length = 1208 Score = 119 bits (60), Expect = 1e-23 Identities = 141/168 (83%) Strand = Plus / Plus Query: 402 caggagaggaagaaaggggttccatggactgaggacgagcaccggaggttcctggccggc 461 ||||||||||||||||| |||||||||| ||||| ||||||||| ||||| | ||| Sbjct: 351 caggagaggaagaaaggagttccatggagcgaggaggagcaccggctattccttgtgggc 410 Query: 462 ctggagaagctcgggaaaggcgactggcgaggcatctcccggcacttcgtcaccacgcgc 521 || ||||||||||| || |||||||||||||| ||||||||| || |||||| || || Sbjct: 411 ctcgagaagctcggcaagggcgactggcgaggtatctcccggagctacgtcacgactcga 470 Query: 522 acgccgacgcaggtggccagccacgcccaaaagtacttcctccggcag 569 || ||||| ||||| ||||||||||| || |||| ||||||| ||||| Sbjct: 471 accccgacacaggttgccagccacgcgcagaagttcttcctcaggcag 518 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 156 agcggcggcgggctgaggctgttcggggtgcag 188 |||||| | ||||||||||| |||||||||||| Sbjct: 111 agcggcagtgggctgaggctcttcggggtgcag 143
>gb|AY151043.1| Oryza sativa (japonica cultivar-group) transcription factor MYBS2 mRNA, complete cds Length = 985 Score = 119 bits (60), Expect = 1e-23 Identities = 141/168 (83%) Strand = Plus / Plus Query: 402 caggagaggaagaaaggggttccatggactgaggacgagcaccggaggttcctggccggc 461 |||||||||||||||||||| |||||||||||||| |||||| || ||||||| || Sbjct: 182 caggagaggaagaaaggggtaccatggactgaggaggagcacaagaaattcctggaaggg 241 Query: 462 ctggagaagctcgggaaaggcgactggcgaggcatctcccggcacttcgtcaccacgcgc 521 ||| | |||| |||||||| |||||| ||||||||||| | |||| || |||| | Sbjct: 242 ctgaggcagctggggaaaggggactggagaggcatctccaagaactttgtgaccagcagg 301 Query: 522 acgccgacgcaggtggccagccacgcccaaaagtacttcctccggcag 569 ||| |||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 302 acggcgactcaggtggccagccacgcccagaagtacttcctccggcag 349
>dbj|AK121235.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093N04, full insert sequence Length = 1142 Score = 111 bits (56), Expect = 3e-21 Identities = 140/168 (83%) Strand = Plus / Plus Query: 402 caggagaggaagaaaggggttccatggactgaggacgagcaccggaggttcctggccggc 461 |||||||||| ||||||||| |||||||||||||| |||||| || ||||||| || Sbjct: 404 caggagaggaggaaaggggtaccatggactgaggaggagcacaagaaattcctggaaggg 463 Query: 462 ctggagaagctcgggaaaggcgactggcgaggcatctcccggcacttcgtcaccacgcgc 521 ||| | |||| |||||||| |||||| ||||||||||| | |||| || |||| | Sbjct: 464 ctgaggcagctggggaaaggggactggagaggcatctccaagaactttgtgaccagcagg 523 Query: 522 acgccgacgcaggtggccagccacgcccaaaagtacttcctccggcag 569 ||| |||| |||||||||||||||||||| |||||||||||||||||| Sbjct: 524 acggcgactcaggtggccagccacgcccagaagtacttcctccggcag 571
>emb|AJ303354.1|HVU303354 Hordeum vulgare cv. Haisa mRNA for MCB1 protein Length = 1115 Score = 111 bits (56), Expect = 3e-21 Identities = 140/168 (83%) Strand = Plus / Plus Query: 402 caggagaggaagaaaggggttccatggactgaggacgagcaccggaggttcctggccggc 461 |||||| | |||| |||| |||| ||||| ||||| |||||| ||| |||||||| || Sbjct: 297 caggagcgcaagagagggattccgtggaccgaggaggagcacaggaagttcctggagggt 356 Query: 462 ctggagaagctcgggaaaggcgactggcgaggcatctcccggcacttcgtcaccacgcgc 521 ||| || |||| || || || |||||| ||||||||||| | ||||||||||||| | Sbjct: 357 ctgaagcagctgggcaagggggactggagaggcatctccaagaacttcgtcaccaccagg 416 Query: 522 acgccgacgcaggtggccagccacgcccaaaagtacttcctccggcag 569 ||| | ||||||||||||||||||||||| |||||||||||||||||| Sbjct: 417 acggccacgcaggtggccagccacgcccagaagtacttcctccggcag 464
>gb|AC136216.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0022J22, complete sequence Length = 142854 Score = 107 bits (54), Expect = 4e-20 Identities = 123/146 (84%) Strand = Plus / Minus Query: 420 gttccatggactgaggacgagcaccggaggttcctggccggcctggagaagctcgggaaa 479 |||||||||| ||| | |||||| || ||||||||| || ||||||||||| || || Sbjct: 11181 gttccatggagcgagcaagagcacaggctgttcctggcggggctggagaagctgggcaag 11122 Query: 480 ggcgactggcgaggcatctcccggcacttcgtcaccacgcgcacgccgacgcaggtggcc 539 |||||||||||||||||||||||| |||||||||||| | ||||| || ||||| ||| Sbjct: 11121 ggcgactggcgaggcatctcccggagcttcgtcaccaccaggacgcccacccaggtcgcc 11062 Query: 540 agccacgcccaaaagtacttcctccg 565 ||||| ||||| |||| ||||||||| Sbjct: 11061 agccatgcccagaagttcttcctccg 11036 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Minus Query: 157 gcggcggcgggctgaggctgttcggggtgcagct 190 |||||| |||||| ||||||||||||||||||| Sbjct: 11542 gcggcgccgggctacggctgttcggggtgcagct 11509
>gb|AC105260.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_D04, complete sequence Length = 100800 Score = 107 bits (54), Expect = 4e-20 Identities = 123/146 (84%) Strand = Plus / Minus Query: 420 gttccatggactgaggacgagcaccggaggttcctggccggcctggagaagctcgggaaa 479 |||||||||| ||| | |||||| || ||||||||| || ||||||||||| || || Sbjct: 53946 gttccatggagcgagcaagagcacaggctgttcctggcggggctggagaagctgggcaag 53887 Query: 480 ggcgactggcgaggcatctcccggcacttcgtcaccacgcgcacgccgacgcaggtggcc 539 |||||||||||||||||||||||| |||||||||||| | ||||| || ||||| ||| Sbjct: 53886 ggcgactggcgaggcatctcccggagcttcgtcaccaccaggacgcccacccaggtcgcc 53827 Query: 540 agccacgcccaaaagtacttcctccg 565 ||||| ||||| |||| ||||||||| Sbjct: 53826 agccatgcccagaagttcttcctccg 53801 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Minus Query: 157 gcggcggcgggctgaggctgttcggggtgcagct 190 |||||| |||||| ||||||||||||||||||| Sbjct: 54307 gcggcgccgggctacggctgttcggggtgcagct 54274
>emb|AJ965495.1| Hordeum vulgare mcb1 gene, exons 1-5 Length = 1515 Score = 107 bits (54), Expect = 4e-20 Identities = 129/154 (83%) Strand = Plus / Plus Query: 416 aggggttccatggactgaggacgagcaccggaggttcctggccggcctggagaagctcgg 475 |||| |||| ||||| ||||| |||||| ||| |||||||| || ||| || |||| || Sbjct: 666 agggattccgtggaccgaggaggagcacaggaagttcctggagggtctgaagcagctggg 725 Query: 476 gaaaggcgactggcgaggcatctcccggcacttcgtcaccacgcgcacgccgacgcaggt 535 || || |||||| ||||||||||| | ||||||||||||| | ||| | |||||||| Sbjct: 726 caagggggactggagaggcatctccaagaacttcgtcaccaccaggacggccacgcaggt 785 Query: 536 ggccagccacgcccaaaagtacttcctccggcag 569 ||||||||||||||| |||||||||||||||||| Sbjct: 786 ggccagccacgcccagaagtacttcctccggcag 819
>dbj|AK105542.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-H11, full insert sequence Length = 1340 Score = 105 bits (53), Expect = 2e-19 Identities = 101/117 (86%) Strand = Plus / Minus Query: 449 gttcctggccggcctggagaagctcgggaaaggcgactggcgaggcatctcccggcactt 508 ||||||||| || ||||||||||| || || |||||||||||||||||||||||| ||| Sbjct: 741 gttcctggcggggctggagaagctgggcaagggcgactggcgaggcatctcccggagctt 682 Query: 509 cgtcaccacgcgcacgccgacgcaggtggccagccacgcccaaaagtacttcctccg 565 ||||||||| | ||||| || ||||| |||||||| ||||| |||| ||||||||| Sbjct: 681 cgtcaccaccaggacgcccacccaggtcgccagccatgcccagaagttcttcctccg 625 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Minus Query: 157 gcggcggcgggctgaggctgttcggggtgcagct 190 |||||| |||||| ||||||||||||||||||| Sbjct: 1131 gcggcgccgggctacggctgttcggggtgcagct 1098
>dbj|AP003330.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1085F01 Length = 163671 Score = 99.6 bits (50), Expect = 1e-17 Identities = 116/138 (84%) Strand = Plus / Plus Query: 432 gaggacgagcaccggaggttcctggccggcctggagaagctcgggaaaggcgactggcga 491 ||||| ||||||||| |||||| | ||| || |||||||| || || |||||||||||| Sbjct: 135248 gaggaggagcaccggctgttcctcgtcgggctcgagaagctgggcaagggcgactggcga 135307 Query: 492 ggcatctcccggcacttcgtcaccacgcgcacgccgacgcaggtggccagccacgcccaa 551 |||||||||||| || |||||| ||| | || ||||| ||||| |||||||||||||| Sbjct: 135308 ggcatctcccggagctacgtcacgacgaggaccccgacccaggtcgccagccacgcccag 135367 Query: 552 aagtacttcctccggcag 569 |||| ||||||| ||||| Sbjct: 135368 aagttcttcctcaggcag 135385 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 gggctgaggctgttcggggtgcag 188 ||||||||||||||||| |||||| Sbjct: 134512 gggctgaggctgttcggagtgcag 134535
>dbj|AP003022.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0681B11 Length = 144091 Score = 99.6 bits (50), Expect = 1e-17 Identities = 116/138 (84%) Strand = Plus / Plus Query: 432 gaggacgagcaccggaggttcctggccggcctggagaagctcgggaaaggcgactggcga 491 ||||| ||||||||| |||||| | ||| || |||||||| || || |||||||||||| Sbjct: 38129 gaggaggagcaccggctgttcctcgtcgggctcgagaagctgggcaagggcgactggcga 38188 Query: 492 ggcatctcccggcacttcgtcaccacgcgcacgccgacgcaggtggccagccacgcccaa 551 |||||||||||| || |||||| ||| | || ||||| ||||| |||||||||||||| Sbjct: 38189 ggcatctcccggagctacgtcacgacgaggaccccgacccaggtcgccagccacgcccag 38248 Query: 552 aagtacttcctccggcag 569 |||| ||||||| ||||| Sbjct: 38249 aagttcttcctcaggcag 38266 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 gggctgaggctgttcggggtgcag 188 ||||||||||||||||| |||||| Sbjct: 37393 gggctgaggctgttcggagtgcag 37416
>gb|AY106692.1| Zea mays PCO074228 mRNA sequence Length = 1178 Score = 95.6 bits (48), Expect = 2e-16 Identities = 139/168 (82%), Gaps = 1/168 (0%) Strand = Plus / Plus Query: 402 caggagaggaagaaaggggttccatggactgaggacgagcaccggaggttcctggccggc 461 ||||| ||||||||||| |||||||||| ||| | |||||| ||| |||||||| ||| Sbjct: 360 caggacaggaagaaaggaattccatggaccgag-aggagcacaggaagttcctggacggg 418 Query: 462 ctggagaagctcgggaaaggcgactggcgaggcatctcccggcacttcgtcaccacgcgc 521 || | |||| || || || |||||| | ||||||||| | |||||||||||| | Sbjct: 419 ctaaggcagctgggcaagggggactggaggggcatctccaagggcttcgtcaccaccagg 478 Query: 522 acgccgacgcaggtggccagccacgcccaaaagtacttcctccggcag 569 ||| ||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 479 acggcgacgcaggtggccagccacgcccagaagtacttcctccggcag 526
>gb|AC079890.13| Oryza sativa chromosome 10 BAC OSJNBb0089A17 genomic sequence, complete sequence Length = 132927 Score = 93.7 bits (47), Expect = 6e-16 Identities = 128/155 (82%) Strand = Plus / Minus Query: 415 aaggggttccatggactgaggacgagcaccggaggttcctggccggcctggagaagctcg 474 ||||||| |||||||||||||| |||||| || ||||||| || ||| | |||| | Sbjct: 88199 aaggggtaccatggactgaggaggagcacaagaaattcctggaagggctgaggcagctgg 88140 Query: 475 ggaaaggcgactggcgaggcatctcccggcacttcgtcaccacgcgcacgccgacgcagg 534 ||||||| |||||| ||||||||||| | |||| || |||| | ||| |||| |||| Sbjct: 88139 ggaaaggggactggagaggcatctccaagaactttgtgaccagcaggacggcgactcagg 88080 Query: 535 tggccagccacgcccaaaagtacttcctccggcag 569 |||||||||||||||| |||||||||||||||||| Sbjct: 88079 tggccagccacgcccagaagtacttcctccggcag 88045
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 93.7 bits (47), Expect = 6e-16 Identities = 128/155 (82%) Strand = Plus / Minus Query: 415 aaggggttccatggactgaggacgagcaccggaggttcctggccggcctggagaagctcg 474 ||||||| |||||||||||||| |||||| || ||||||| || ||| | |||| | Sbjct: 21656295 aaggggtaccatggactgaggaggagcacaagaaattcctggaagggctgaggcagctgg 21656236 Query: 475 ggaaaggcgactggcgaggcatctcccggcacttcgtcaccacgcgcacgccgacgcagg 534 ||||||| |||||| ||||||||||| | |||| || |||| | ||| |||| |||| Sbjct: 21656235 ggaaaggggactggagaggcatctccaagaactttgtgaccagcaggacggcgactcagg 21656176 Query: 535 tggccagccacgcccaaaagtacttcctccggcag 569 |||||||||||||||| |||||||||||||||||| Sbjct: 21656175 tggccagccacgcccagaagtacttcctccggcag 21656141 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 264 gcggcggccgcggccgtgggtgttg 288 |||||||| |||||||||||||||| Sbjct: 17712856 gcggcggcggcggccgtgggtgttg 17712880
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 93.7 bits (47), Expect = 6e-16 Identities = 128/155 (82%) Strand = Plus / Minus Query: 415 aaggggttccatggactgaggacgagcaccggaggttcctggccggcctggagaagctcg 474 ||||||| |||||||||||||| |||||| || ||||||| || ||| | |||| | Sbjct: 21667958 aaggggtaccatggactgaggaggagcacaagaaattcctggaagggctgaggcagctgg 21667899 Query: 475 ggaaaggcgactggcgaggcatctcccggcacttcgtcaccacgcgcacgccgacgcagg 534 ||||||| |||||| ||||||||||| | |||| || |||| | ||| |||| |||| Sbjct: 21667898 ggaaaggggactggagaggcatctccaagaactttgtgaccagcaggacggcgactcagg 21667839 Query: 535 tggccagccacgcccaaaagtacttcctccggcag 569 |||||||||||||||| |||||||||||||||||| Sbjct: 21667838 tggccagccacgcccagaagtacttcctccggcag 21667804 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 264 gcggcggccgcggccgtgggtgttg 288 |||||||| |||||||||||||||| Sbjct: 17722109 gcggcggcggcggccgtgggtgttg 17722133
>dbj|AK062458.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-D01, full insert sequence Length = 635 Score = 81.8 bits (41), Expect = 2e-12 Identities = 68/77 (88%) Strand = Plus / Plus Query: 169 tgaggctgttcggggtgcagctgcaagtgggcgctgcgcctctcaagaagagcttcagta 228 ||||| |||||||||||||| |||| || |||| ||||||||| |||||| ||||||| | Sbjct: 256 tgaggttgttcggggtgcagttgcacgtcggcggtgcgcctctgaagaagtgcttcagca 315 Query: 229 tggagtgcctgtcgtcg 245 |||||||||| |||||| Sbjct: 316 tggagtgcctatcgtcg 332 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 79 gcatggcgaggaaatgctcgagctgcggccacaatggccacaactcgaggacctgcagcg 138 ||||||| ||||||||||| |||||||| |||||||||||||||| ||||| |||| || Sbjct: 139 gcatggccaggaaatgctccagctgcgggaacaatggccacaactccaggacttgcaccg 198 Query: 139 gcca 142 |||| Sbjct: 199 gcca 202 Score = 60.0 bits (30), Expect = 9e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 354 gagaagatgggccacgggtacctctcggacggactcatgggcagggctcaggagaggaag 413 |||||||||| | ||||||||||||| || || ||||||| || ||||||||||||||| Sbjct: 444 gagaagatggccaacgggtacctctccgatggcctcatggcgagagctcaggagaggaag 503 Query: 414 aa 415 || Sbjct: 504 aa 505
>ref|NM_190722.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 522 Score = 73.8 bits (37), Expect = 6e-10 Identities = 52/57 (91%) Strand = Plus / Plus Query: 516 acgcgcacgccgacgcaggtggccagccacgcccaaaagtacttcctccggcaggcc 572 ||||| ||||||||||||||||| |||||||| || ||||||||| ||||||||||| Sbjct: 409 acgcggacgccgacgcaggtggcgagccacgcgcagaagtacttcatccggcaggcc 465
>dbj|AP003611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0423B08 Length = 151490 Score = 73.8 bits (37), Expect = 6e-10 Identities = 52/57 (91%) Strand = Plus / Plus Query: 516 acgcgcacgccgacgcaggtggccagccacgcccaaaagtacttcctccggcaggcc 572 ||||| ||||||||||||||||| |||||||| || ||||||||| ||||||||||| Sbjct: 64345 acgcggacgccgacgcaggtggcgagccacgcgcagaagtacttcatccggcaggcc 64401
>dbj|AK111571.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071A13, full insert sequence Length = 1030 Score = 73.8 bits (37), Expect = 6e-10 Identities = 52/57 (91%) Strand = Plus / Plus Query: 516 acgcgcacgccgacgcaggtggccagccacgcccaaaagtacttcctccggcaggcc 572 ||||| ||||||||||||||||| |||||||| || ||||||||| ||||||||||| Sbjct: 524 acgcggacgccgacgcaggtggcgagccacgcgcagaagtacttcatccggcaggcc 580
>gb|AC130602.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1122D01, complete sequence Length = 126532 Score = 67.9 bits (34), Expect = 4e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 522 acgccgacgcaggtggccagccacgcccaaaagtacttcctccggc 567 |||||||||||||||||||||||||| || ||||||||| |||||| Sbjct: 56484 acgccgacgcaggtggccagccacgcgcagaagtacttcatccggc 56439
>dbj|AK068138.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135D01, full insert sequence Length = 1988 Score = 67.9 bits (34), Expect = 4e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 522 acgccgacgcaggtggccagccacgcccaaaagtacttcctccggc 567 |||||||||||||||||||||||||| || ||||||||| |||||| Sbjct: 948 acgccgacgcaggtggccagccacgcgcagaagtacttcatccggc 993
>ref|NM_190651.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1527 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 522 acgccgacgcaggtggccagccacgcccaaaagtacttcctccg 565 |||||||||||||||||||||||||| || ||||||||| |||| Sbjct: 511 acgccgacgcaggtggccagccacgcgcagaagtacttcatccg 554 Score = 44.1 bits (22), Expect = 0.51 Identities = 37/42 (88%) Strand = Plus / Plus Query: 402 caggagaggaagaaaggggttccatggactgaggacgagcac 443 ||||||||||||||||| || || ||||| ||||| |||||| Sbjct: 391 caggagaggaagaaaggcgtcccgtggacggaggaggagcac 432
>ref|NM_193688.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 921 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 462 ctggagaagctcgggaaaggcgactggcgaggcatctcccggcacttcgtcaccacgcgc 521 ||||| ||| |||| || || |||||||| ||||||| || ||||||||| | |||| Sbjct: 466 ctggacaagttcggcaagggggactggcggagcatctcgcgcaacttcgtcatctcgcgg 525 Query: 522 acgccgacgcaggtggccagccacgcccaaaagtacttcctccg 565 ||||| ||||||||||| |||||||| || ||||||||| |||| Sbjct: 526 acgccaacgcaggtggcgagccacgcgcagaagtacttcatccg 569
>dbj|AP004611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1005_B10 Length = 142680 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 462 ctggagaagctcgggaaaggcgactggcgaggcatctcccggcacttcgtcaccacgcgc 521 ||||| ||| |||| || || |||||||| ||||||| || ||||||||| | |||| Sbjct: 139544 ctggacaagttcggcaagggggactggcggagcatctcgcgcaacttcgtcatctcgcgg 139603 Query: 522 acgccgacgcaggtggccagccacgcccaaaagtacttcctccg 565 ||||| ||||||||||| |||||||| || ||||||||| |||| Sbjct: 139604 acgccaacgcaggtggcgagccacgcgcagaagtacttcatccg 139647
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 505 acttcgtcaccacgcgcacgccgacgcaggtggccagccacgcccaaaagtacttc 560 ||||||||| | |||| ||||||||||||||||| |||||||| || ||||||||| Sbjct: 16212961 acttcgtcatctcgcggacgccgacgcaggtggcgagccacgcgcagaagtacttc 16212906 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 560 cctccggcaggccggcctcg 579 |||||||||||||||||||| Sbjct: 26188585 cctccggcaggccggcctcg 26188604
>dbj|AP003279.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529E05 Length = 134982 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 522 acgccgacgcaggtggccagccacgcccaaaagtacttcctccg 565 |||||||||||||||||||||||||| || ||||||||| |||| Sbjct: 84162 acgccgacgcaggtggccagccacgcgcagaagtacttcatccg 84119 Score = 44.1 bits (22), Expect = 0.51 Identities = 37/42 (88%) Strand = Plus / Minus Query: 402 caggagaggaagaaaggggttccatggactgaggacgagcac 443 ||||||||||||||||| || || ||||| ||||| |||||| Sbjct: 84398 caggagaggaagaaaggcgtcccgtggacggaggaggagcac 84357
>dbj|AP006233.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1249E06 Length = 126534 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 462 ctggagaagctcgggaaaggcgactggcgaggcatctcccggcacttcgtcaccacgcgc 521 ||||| ||| |||| || || |||||||| ||||||| || ||||||||| | |||| Sbjct: 73615 ctggacaagttcggcaagggggactggcggagcatctcgcgcaacttcgtcatctcgcgg 73674 Query: 522 acgccgacgcaggtggccagccacgcccaaaagtacttcctccg 565 ||||| ||||||||||| |||||||| || ||||||||| |||| Sbjct: 73675 acgccaacgcaggtggcgagccacgcgcagaagtacttcatccg 73718
>dbj|AK111988.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-C10, full insert sequence Length = 1502 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 522 acgccgacgcaggtggccagccacgcccaaaagtacttcctccg 565 |||||||||||||||||||||||||| || ||||||||| |||| Sbjct: 591 acgccgacgcaggtggccagccacgcgcagaagtacttcatccg 634 Score = 44.1 bits (22), Expect = 0.51 Identities = 37/42 (88%) Strand = Plus / Plus Query: 402 caggagaggaagaaaggggttccatggactgaggacgagcac 443 ||||||||||||||||| || || ||||| ||||| |||||| Sbjct: 471 caggagaggaagaaaggcgtcccgtggacggaggaggagcac 512
>dbj|AK068565.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154G12, full insert sequence Length = 1329 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 462 ctggagaagctcgggaaaggcgactggcgaggcatctcccggcacttcgtcaccacgcgc 521 ||||| ||| |||| || || |||||||| ||||||| || ||||||||| | |||| Sbjct: 500 ctggacaagttcggcaagggggactggcggagcatctcgcgcaacttcgtcatctcgcgg 559 Query: 522 acgccgacgcaggtggccagccacgcccaaaagtacttcctccg 565 ||||| ||||||||||| |||||||| || ||||||||| |||| Sbjct: 560 acgccaacgcaggtggcgagccacgcgcagaagtacttcatccg 603
>emb|AL606729.3|OSJN00107 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0062B06, complete sequence Length = 187154 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 505 acttcgtcaccacgcgcacgccgacgcaggtggccagccacgcccaaaagtacttc 560 ||||||||| | |||| ||||||||||||||||| |||||||| || ||||||||| Sbjct: 57876 acttcgtcatctcgcggacgccgacgcaggtggcgagccacgcgcagaagtacttc 57821
>gb|AY151042.1| Oryza sativa (japonica cultivar-group) transcription factor MYBS1 mRNA, complete cds Length = 1330 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 462 ctggagaagctcgggaaaggcgactggcgaggcatctcccggcacttcgtcaccacgcgc 521 ||||| ||| |||| || || |||||||| ||||||| || ||||||||| | |||| Sbjct: 485 ctggacaagttcggcaagggggactggcggagcatctcgcgcaacttcgtcatctcgcgg 544 Query: 522 acgccgacgcaggtggccagccacgcccaaaagtacttcctccg 565 ||||| ||||||||||| |||||||| || ||||||||| |||| Sbjct: 545 acgccaacgcaggtggcgagccacgcgcagaagtacttcatccg 588
>gb|S74753.1| mybSt1=Myb-related transcriptional activator [Solanum tuberosum=potatoes, leaf, mRNA, 1465 nt] Length = 1465 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 408 aggaagaaaggggttccatggactgaggacgagca 442 ||||||||||||||||| ||||||||||| ||||| Sbjct: 537 aggaagaaaggggttccctggactgaggaggagca 571
>ref|NM_120198.2| Arabidopsis thaliana DNA binding / transcription factor AT5G01200 mRNA, complete cds Length = 1053 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 403 aggagaggaagaaaggggttccatggactgaggacgagcacc 444 |||||||||||||||| ||||| ||||| |||||||| |||| Sbjct: 419 aggagaggaagaaaggagttccgtggaccgaggacgaacacc 460
>ref|XM_550094.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1796 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 402 caggagaggaagaaaggggttccatggactgaggacgagcac 443 ||||||||||||||||| || |||||||| ||||| |||||| Sbjct: 688 caggagaggaagaaaggcgtgccatggacggaggaggagcac 729
>gb|AY519530.1| Arabidopsis thaliana MYB transcription factor (At5g01200) mRNA, complete cds Length = 804 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 403 aggagaggaagaaaggggttccatggactgaggacgagcacc 444 |||||||||||||||| ||||| ||||| |||||||| |||| Sbjct: 419 aggagaggaagaaaggagttccgtggaccgaggacgaacacc 460
>emb|AL137189.2|ATF7J8 Arabidopsis thaliana DNA chromosome 5, BAC clone F7J8 (ESSA project) Length = 118507 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 403 aggagaggaagaaaggggttccatggactgaggacgagcacc 444 |||||||||||||||| ||||| ||||| |||||||| |||| Sbjct: 72951 aggagaggaagaaaggagttccgtggaccgaggacgaacacc 72992
>dbj|AP003311.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0024G09 Length = 175565 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 402 caggagaggaagaaaggggttccatggactgaggacgagcac 443 ||||||||||||||||| || |||||||| ||||| |||||| Sbjct: 11616 caggagaggaagaaaggcgtgccatggacggaggaggagcac 11575
>dbj|AP002483.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0019D06 Length = 167405 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 402 caggagaggaagaaaggggttccatggactgaggacgagcac 443 ||||||||||||||||| || |||||||| ||||| |||||| Sbjct: 66150 caggagaggaagaaaggcgtgccatggacggaggaggagcac 66109
>dbj|AK067964.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124L02, full insert sequence Length = 1795 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 402 caggagaggaagaaaggggttccatggactgaggacgagcac 443 ||||||||||||||||| || |||||||| ||||| |||||| Sbjct: 687 caggagaggaagaaaggcgtgccatggacggaggaggagcac 728
>ref|NM_125280.3| Arabidopsis thaliana DNA binding / transcription factor AT5G58900 mRNA, complete cds Length = 1686 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 540 agccacgcccaaaagtacttcctccggca 568 ||||||||||||||||||||| ||||||| Sbjct: 1208 agccacgcccaaaagtacttcatccggca 1236
>gb|AC137611.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0020H14, complete sequence Length = 185623 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Minus Query: 516 acgcgcacgccgacgcaggtggccagccacgcccaaaagtacttc 560 ||||| || |||||||||||||| |||||||| ||||||| |||| Sbjct: 58936 acgcggaccccgacgcaggtggcgagccacgcacaaaagttcttc 58892
>gb|AC147462.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1110B01, complete sequence Length = 160142 Score = 50.1 bits (25), Expect = 0.008 Identities = 40/45 (88%) Strand = Plus / Minus Query: 516 acgcgcacgccgacgcaggtggccagccacgcccaaaagtacttc 560 ||||| || |||||||||||||| |||||||| ||||||| |||| Sbjct: 98163 acgcggaccccgacgcaggtggcgagccacgcacaaaagttcttc 98119
>gb|AY519533.1| Arabidopsis thaliana MYB transcription factor (At5g58900) mRNA, complete cds Length = 867 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 540 agccacgcccaaaagtacttcctccggca 568 ||||||||||||||||||||| ||||||| Sbjct: 541 agccacgcccaaaagtacttcatccggca 569
>emb|BX831142.1|CNS0A296 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS60ZG11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1667 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 540 agccacgcccaaaagtacttcctccggca 568 ||||||||||||||||||||| ||||||| Sbjct: 1208 agccacgcccaaaagtacttcatccggca 1236
>gb|BT005473.1| Arabidopsis thaliana clone U51211 putative I-box binding factor (At5g58900) mRNA, complete cds Length = 898 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 540 agccacgcccaaaagtacttcctccggca 568 ||||||||||||||||||||| ||||||| Sbjct: 541 agccacgcccaaaagtacttcatccggca 569
>dbj|AK118891.1| Arabidopsis thaliana At5g58900 mRNA for putative I-box binding factor, complete cds, clone: RAFL21-22-M07 Length = 1640 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Plus Query: 540 agccacgcccaaaagtacttcctccggca 568 ||||||||||||||||||||| ||||||| Sbjct: 1162 agccacgcccaaaagtacttcatccggca 1190
>dbj|AB016885.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K19M22 Length = 77758 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 540 agccacgcccaaaagtacttcctccggca 568 ||||||||||||||||||||| ||||||| Sbjct: 36527 agccacgcccaaaagtacttcatccggca 36499
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Minus Query: 530 gcaggtggccagccacgcccaaaagtacttcc 561 ||||||| ||||||||||||| |||||||||| Sbjct: 3706703 gcaggtgtccagccacgcccagaagtacttcc 3706672 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Minus Query: 530 gcaggtggccagccacgcccaaaagtacttcc 561 ||||||| ||||||||||||| |||||||||| Sbjct: 3701673 gcaggtgtccagccacgcccagaagtacttcc 3701642
>dbj|AP002854.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0014B15 Length = 158821 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Minus Query: 530 gcaggtggccagccacgcccaaaagtacttcc 561 ||||||| ||||||||||||| |||||||||| Sbjct: 100931 gcaggtgtccagccacgcccagaagtacttcc 100900 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Minus Query: 530 gcaggtggccagccacgcccaaaagtacttcc 561 ||||||| ||||||||||||| |||||||||| Sbjct: 95901 gcaggtgtccagccacgcccagaagtacttcc 95870
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 563 ccggcaggccggcctcgcgcagaa 586 |||||||||||||||||||||||| Sbjct: 1170660 ccggcaggccggcctcgcgcagaa 1170637
>ref|NM_180227.1| Arabidopsis thaliana DNA binding / transcription factor AT3G11280 transcript variant AT3G11280.2 mRNA, complete cds Length = 1117 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 522 acgccgacgcaggtggccagccacgcccaaaagta 556 ||||| ||||| ||||| ||||||||||||||||| Sbjct: 584 acgccaacgcaagtggcgagccacgcccaaaagta 618
>ref|NM_111963.2| Arabidopsis thaliana DNA binding / transcription factor AT3G11280 transcript variant AT3G11280.1 mRNA, complete cds Length = 1242 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 522 acgccgacgcaggtggccagccacgcccaaaagta 556 ||||| ||||| ||||| ||||||||||||||||| Sbjct: 709 acgccaacgcaagtggcgagccacgcccaaaagta 743
>gb|AY550308.1| Arabidopsis thaliana MYB transcription factor (At3g11280) mRNA, complete cds Length = 792 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 522 acgccgacgcaggtggccagccacgcccaaaagta 556 ||||| ||||| ||||| ||||||||||||||||| Sbjct: 481 acgccaacgcaagtggcgagccacgcccaaaagta 515
>gb|AY091265.1| Arabidopsis thaliana putative MYB-family transcription factor (At3g11280) mRNA, complete cds Length = 823 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 522 acgccgacgcaggtggccagccacgcccaaaagta 556 ||||| ||||| ||||| ||||||||||||||||| Sbjct: 481 acgccaacgcaagtggcgagccacgcccaaaagta 515
>gb|AY056180.1| Arabidopsis thaliana putative MYB-family transcription factor (At3g11280) mRNA, complete cds Length = 1071 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 522 acgccgacgcaggtggccagccacgcccaaaagta 556 ||||| ||||| ||||| ||||||||||||||||| Sbjct: 584 acgccaacgcaagtggcgagccacgcccaaaagta 618
>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 Length = 2661830 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 160 gcggcgggctgaggctgttcggg 182 ||||||||||||||||||||||| Sbjct: 223212 gcggcgggctgaggctgttcggg 223234
>emb|BX824021.1|CNS0A6TB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH15ZE09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1466 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 522 acgccgacgcaggtggccagccacgcccaaaagta 556 ||||| ||||| ||||| ||||||||||||||||| Sbjct: 966 acgccaacgcaagtggcgagccacgcccaaaagta 1000
>emb|BX824225.1|CNS0A6OY Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH30ZH04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1409 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 522 acgccgacgcaggtggccagccacgcccaaaagta 556 ||||| ||||| ||||| ||||||||||||||||| Sbjct: 1010 acgccaacgcaagtggcgagccacgcccaaaagta 1044
>gb|AC073395.6|AC073395 Arabidopsis thaliana chromosome 3 BAC F11B9 genomic sequence, complete sequence Length = 103517 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 522 acgccgacgcaggtggccagccacgcccaaaagta 556 ||||| ||||| ||||| ||||||||||||||||| Sbjct: 70954 acgccaacgcaagtggcgagccacgcccaaaagta 70920
>gb|AY084487.1| Arabidopsis thaliana clone 109398 mRNA, complete sequence Length = 1169 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 522 acgccgacgcaggtggccagccacgcccaaaagta 556 ||||| ||||| ||||| ||||||||||||||||| Sbjct: 671 acgccaacgcaagtggcgagccacgcccaaaagta 705
>gb|AY108954.1| Zea mays PCO136991 mRNA sequence Length = 633 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 396 agggctcaggagaggaagaaaggggttccatggactgaggacgagca 442 ||||| |||||||||||||||| ||||| |||||||| || ||||| Sbjct: 322 agggcgcaggagaggaagaaagctgttccttggactgaagaggagca 368
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 562 tccggcaggccggcctcgcgcag 584 ||||||||||||||||||||||| Sbjct: 3059296 tccggcaggccggcctcgcgcag 3059274
>gb|AY308817.1| Canis familiaris homeobox D11 gene, partial sequence Length = 494 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 256 cctactacgcggcggccgcggc 277 |||||||||||||||||||||| Sbjct: 118 cctactacgcggcggccgcggc 97
>ref|NM_125067.2| Arabidopsis thaliana DNA binding / nucleic acid binding / transcription factor AT5G56840 mRNA, complete cds Length = 830 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Plus Query: 414 aaaggggttccatggactgaggacgagcaccgga 447 ||||||||||||||||| | ||| |||||||||| Sbjct: 292 aaaggggttccatggacggcggaagagcaccgga 325
>ref|NM_129365.3| Arabidopsis thaliana DNA binding / transcription factor AT2G38090 mRNA, complete cds Length = 1774 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 405 gagaggaagaaaggggttccatggac 430 |||||||||||||| ||||||||||| Sbjct: 973 gagaggaagaaaggtgttccatggac 998
>gb|BT014956.1| Arabidopsis thaliana At5g56840 gene, complete cds Length = 702 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Plus Query: 414 aaaggggttccatggactgaggacgagcaccgga 447 ||||||||||||||||| | ||| |||||||||| Sbjct: 265 aaaggggttccatggacggcggaagagcaccgga 298
>gb|BT012528.1| Arabidopsis thaliana At5g56840 gene, complete cds Length = 898 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Plus Query: 414 aaaggggttccatggactgaggacgagcaccgga 447 ||||||||||||||||| | ||| |||||||||| Sbjct: 361 aaaggggttccatggacggcggaagagcaccgga 394
>ref|XM_847336.1| PREDICTED: Canis familiaris similar to Homeobox protein Hox-D11 (Hox-4F) (LOC609973), mRNA Length = 1456 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 256 cctactacgcggcggccgcggc 277 |||||||||||||||||||||| Sbjct: 314 cctactacgcggcggccgcggc 335
>gb|AY519529.1| Arabidopsis thaliana MYB transcription factor (At2g38090) mRNA, complete cds Length = 897 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 405 gagaggaagaaaggggttccatggac 430 |||||||||||||| ||||||||||| Sbjct: 406 gagaggaagaaaggtgttccatggac 431
>gb|AY519517.1| Arabidopsis thaliana MYB transcription factor (At5g56840) mRNA, complete cds Length = 702 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Plus Query: 414 aaaggggttccatggactgaggacgagcaccgga 447 ||||||||||||||||| | ||| |||||||||| Sbjct: 265 aaaggggttccatggacggcggaagagcaccgga 298
>emb|AL160057.11| Human DNA sequence from clone RP11-25C18 on chromosome 1q31.1-31.3, complete sequence Length = 107328 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 546 gcccaaaagtacttcctccggc 567 |||||||||||||||||||||| Sbjct: 57786 gcccaaaagtacttcctccggc 57807
>gb|AC112211.2| Homo sapiens chromosome 3 clone RP11-627J17, complete sequence Length = 182509 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 43 accttcttggtttccaaccttg 64 |||||||||||||||||||||| Sbjct: 139106 accttcttggtttccaaccttg 139085
>gb|AC003028.3| Arabidopsis thaliana chromosome 2 clone F16M14 map ve018, complete sequence Length = 115359 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 405 gagaggaagaaaggggttccatggac 430 |||||||||||||| ||||||||||| Sbjct: 13410 gagaggaagaaaggtgttccatggac 13435
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 237 ctgtcgtcgtcggcgtcggcct 258 |||||||||||||||||||||| Sbjct: 4243379 ctgtcgtcgtcggcgtcggcct 4243400 Score = 40.1 bits (20), Expect = 8.0 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 517 cgcgcacgccgacgcaggtggccagccacgcc 548 |||||||||||||| ||||||||| ||||||| Sbjct: 5052821 cgcgcacgccgacg-aggtggccacccacgcc 5052791
>gb|BT006122.1| Arabidopsis thaliana clone U50930 putative MYB family transcription factor (At2g38090) mRNA, complete cds Length = 928 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 405 gagaggaagaaaggggttccatggac 430 |||||||||||||| ||||||||||| Sbjct: 406 gagaggaagaaaggtgttccatggac 431
>emb|BX819575.1|CNS0A8XQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB90ZF02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1557 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 405 gagaggaagaaaggggttccatggac 430 |||||||||||||| ||||||||||| Sbjct: 917 gagaggaagaaaggtgttccatggac 942
>emb|BX833960.1|CNS0A1UC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL86ZD08 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 830 Score = 44.1 bits (22), Expect = 0.51 Identities = 31/34 (91%) Strand = Plus / Plus Query: 414 aaaggggttccatggactgaggacgagcaccgga 447 ||||||||||||||||| | ||| |||||||||| Sbjct: 292 aaaggggttccatggacggcggaagagcaccgga 325
>dbj|AK118135.1| Arabidopsis thaliana At2g38090 mRNA for putative MYB family transcription factor, complete cds, clone: RAFL19-43-J04 Length = 1645 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 405 gagaggaagaaaggggttccatggac 430 |||||||||||||| ||||||||||| Sbjct: 973 gagaggaagaaaggtgttccatggac 998
>gb|AY712938.1| Hevea brasiliensis MYB transcription factor (MYB) gene, complete cds Length = 1547 Score = 42.1 bits (21), Expect = 2.0 Identities = 36/41 (87%) Strand = Plus / Plus Query: 402 caggagaggaagaaaggggttccatggactgaggacgagca 442 ||||| ||||||||||| || || ||||||||||| ||||| Sbjct: 441 caggaaaggaagaaaggtgtgccgtggactgaggaggagca 481
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 238 tgtcgtcgtcggcgtcggcct 258 ||||||||||||||||||||| Sbjct: 3650752 tgtcgtcgtcggcgtcggcct 3650732
>emb|AL357772.15| Human DNA sequence from clone RP11-71E22 on chromosome 9 Contains a novel pseudogene and the 5' end of a novel gene, complete sequence Length = 162503 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 tccttcttctccaaccttctt 50 ||||||||||||||||||||| Sbjct: 49283 tccttcttctccaaccttctt 49303
>emb|AL133380.5| Human DNA sequence from clone RP5-862P8 on chromosome 1q42.2-43 Contains a ribosomal protein S7 (RPS7) pseudogene, pecanex homolog (Drosophila) (PCNX) pseudogene and the gene for mixed lineage kinase 4 (KIAA1804), complete sequence Length = 118632 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 125 gaggacctgcagcggccacag 145 ||||||||||||||||||||| Sbjct: 12621 gaggacctgcagcggccacag 12641
>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29 Length = 277000 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 455 ggccggcctggagaagctcgg 475 ||||||||||||||||||||| Sbjct: 233035 ggccggcctggagaagctcgg 233015
>gb|AC051632.18| Oryza sativa chromosome 10 BAC OSJNBa0012L23 genomic sequence, complete sequence Length = 153182 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 264 gcggcggccgcggccgtgggtgttg 288 |||||||| |||||||||||||||| Sbjct: 67976 gcggcggcggcggccgtgggtgttg 68000
>emb|BX647307.1|HSM807451 Homo sapiens mRNA; cDNA DKFZp686M21196 (from clone DKFZp686M21196) Length = 2287 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 405 gagaggaagaaaggggttcca 425 ||||||||||||||||||||| Sbjct: 542 gagaggaagaaaggggttcca 562
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 560 cctccggcaggccggcctcgcgcag 584 |||||||||| |||||||||||||| Sbjct: 177395 cctccggcagcccggcctcgcgcag 177371
>gb|AE012518.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 426 of 460 of the complete genome Length = 10619 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 564 cggcaggccggcctcgcgcag 584 ||||||||||||||||||||| Sbjct: 3561 cggcaggccggcctcgcgcag 3581
>ref|NM_005558.3| Homo sapiens ladinin 1 (LAD1), mRNA Length = 2869 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 405 gagaggaagaaaggggttcca 425 ||||||||||||||||||||| Sbjct: 737 gagaggaagaaaggggttcca 757
>ref|XM_939730.1| PREDICTED: Homo sapiens similar to one cut domain, family member 3 (LOC390874), mRNA Length = 1771 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 acgcggcggccgcggccgtgg 282 ||||||||||||||||||||| Sbjct: 380 acgcggcggccgcggccgtgg 400
>ref|XM_372702.3| PREDICTED: Homo sapiens similar to one cut domain, family member 3 (LOC390874), mRNA Length = 1771 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 acgcggcggccgcggccgtgg 282 ||||||||||||||||||||| Sbjct: 380 acgcggcggccgcggccgtgg 400
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 564 cggcaggccggcctcgcgcag 584 ||||||||||||||||||||| Sbjct: 4786065 cggcaggccggcctcgcgcag 4786085 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 gcggcggccgcggccgtggg 283 |||||||||||||||||||| Sbjct: 4765610 gcggcggccgcggccgtggg 4765629
>gb|AF239956.1| Hevea brasiliensis unknown mRNA Length = 1204 Score = 42.1 bits (21), Expect = 2.0 Identities = 36/41 (87%) Strand = Plus / Plus Query: 402 caggagaggaagaaaggggttccatggactgaggacgagca 442 ||||| ||||||||||| || || ||||||||||| ||||| Sbjct: 433 caggaaaggaagaaaggtgtgccgtggactgaggaggagca 473
>gb|AC005256.2|AC005256 Homo sapiens chromosome 19, cosmid F21967 (LLNLF-177F11) and 3' overlapping PCR product, complete sequence Length = 39374 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 acgcggcggccgcggccgtgg 282 ||||||||||||||||||||| Sbjct: 26044 acgcggcggccgcggccgtgg 26064
>gb|AC119427.3| Homo sapiens chromosome 1 clone RP11-27G14, complete sequence Length = 181148 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 405 gagaggaagaaaggggttcca 425 ||||||||||||||||||||| Sbjct: 139877 gagaggaagaaaggggttcca 139857
>gb|BC071890.1| Homo sapiens ladinin 1, mRNA (cDNA clone MGC:88569 IMAGE:6082757), complete cds Length = 2544 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 405 gagaggaagaaaggggttcca 425 ||||||||||||||||||||| Sbjct: 798 gagaggaagaaaggggttcca 818
>gb|BC009742.2| Homo sapiens ladinin 1, mRNA (cDNA clone MGC:10355 IMAGE:3842503), complete cds Length = 2869 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 405 gagaggaagaaaggggttcca 425 ||||||||||||||||||||| Sbjct: 737 gagaggaagaaaggggttcca 757
>gb|U58994.1|HSU58994 Human ladinin (LAD) gene, complete cds Length = 8134 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 405 gagaggaagaaaggggttcca 425 ||||||||||||||||||||| Sbjct: 3062 gagaggaagaaaggggttcca 3082
>gb|DQ323739.1| Hevea brasiliensis MYB transcription factor (MYB) mRNA, complete cds Length = 970 Score = 42.1 bits (21), Expect = 2.0 Identities = 36/41 (87%) Strand = Plus / Plus Query: 402 caggagaggaagaaaggggttccatggactgaggacgagca 442 ||||| ||||||||||| || || ||||||||||| ||||| Sbjct: 401 caggaaaggaagaaaggtgtgccgtggactgaggaggagca 441
>emb|AJ870304.1| Cucumis sativus mRNA for putative MYB transcription factor (se3f1 gene) Length = 1526 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 408 aggaagaaaggggttccatggactgagga 436 |||||||||||||| |||||||| ||||| Sbjct: 840 aggaagaaaggggtcccatggacagagga 868
>gb|U42408.1|HSU42408 Human ladinin (LAD) mRNA, complete cds Length = 2442 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 405 gagaggaagaaaggggttcca 425 ||||||||||||||||||||| Sbjct: 721 gagaggaagaaaggggttcca 741
>gb|AC167718.4| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940130D9, complete sequence Length = 117683 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 554 gtacttcctccggcaggccg 573 |||||||||||||||||||| Sbjct: 26363 gtacttcctccggcaggccg 26382
>gb|AE010318.1| Methanopyrus kandleri AV19 section 17 of 157 of the complete genome Length = 10626 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 461 cctggagaagctcgggaaaggcga 484 ||||||||||||||| |||||||| Sbjct: 3356 cctggagaagctcggtaaaggcga 3333
>ref|XM_480121.1| Oryza sativa (japonica cultivar-group), mRNA Length = 924 Score = 40.1 bits (20), Expect = 8.0 Identities = 38/44 (86%) Strand = Plus / Plus Query: 402 caggagaggaagaaaggggttccatggactgaggacgagcaccg 445 |||||||||||||||| || || |||||||| || |||||||| Sbjct: 271 caggagaggaagaaagctgtcccttggactgaagaagagcaccg 314
>gb|AF488412.1| Sorghum bicolor BAC 131L1, complete sequence Length = 130987 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 gcctgtcgtcgtcggcgtcg 254 |||||||||||||||||||| Sbjct: 4859 gcctgtcgtcgtcggcgtcg 4878
>gb|AC134786.6| Mus musculus chromosome 15, clone RP24-502A14, complete sequence Length = 179157 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 tcaggagaggaagaaagggg 420 |||||||||||||||||||| Sbjct: 57104 tcaggagaggaagaaagggg 57123
>gb|AC131178.11| Mus musculus chromosome 15, clone RP23-376I10, complete sequence Length = 170753 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 tcaggagaggaagaaagggg 420 |||||||||||||||||||| Sbjct: 131227 tcaggagaggaagaaagggg 131208
>gb|AC102449.7| Mus musculus chromosome 5, clone RP24-216G12, complete sequence Length = 172155 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 aggagaggaagaaaggggtt 422 |||||||||||||||||||| Sbjct: 67466 aggagaggaagaaaggggtt 67485
>emb|CT025600.8| Mouse DNA sequence from clone RP24-120I22 on chromosome 12, complete sequence Length = 159693 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ccttcttctccaaccttctt 50 |||||||||||||||||||| Sbjct: 128779 ccttcttctccaaccttctt 128760
>gb|AC127689.4| Mus musculus BAC clone RP24-206I5 from chromosome 5, complete sequence Length = 155413 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 aggagaggaagaaaggggtt 422 |||||||||||||||||||| Sbjct: 142286 aggagaggaagaaaggggtt 142267
>gb|AC162303.4| Mus musculus chromosome 15, clone RP23-475N20, complete sequence Length = 181487 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 tcaggagaggaagaaagggg 420 |||||||||||||||||||| Sbjct: 153451 tcaggagaggaagaaagggg 153470
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome Length = 2971517 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 520 gcacgccgacgcaggtggccagcc 543 |||||||| ||||||||||||||| Sbjct: 472686 gcacgccggcgcaggtggccagcc 472709 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 83 ggcgaggaaatgctcgagctgcgg 106 |||||||||||||| ||||||||| Sbjct: 321818 ggcgaggaaatgctggagctgcgg 321795
>gb|AC167662.6| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940141D9, complete sequence Length = 117679 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 554 gtacttcctccggcaggccg 573 |||||||||||||||||||| Sbjct: 91319 gtacttcctccggcaggccg 91300
>emb|X73036.1|CCGAPCD Chondrus crispus GapC gene for glyceraldehyde-3-phosphate dehydrogenase Length = 2746 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 cgcggcggccgcggccgtgg 282 |||||||||||||||||||| Sbjct: 1833 cgcggcggccgcggccgtgg 1852
>emb|X73034.1|CCGAPC Chondrus crispus mRNA for glyceraldehyde 3-phosphate dehydrogenase (GapC gene) Length = 1165 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 cgcggcggccgcggccgtgg 282 |||||||||||||||||||| Sbjct: 688 cgcggcggccgcggccgtgg 707
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 tctccttcttctccaacctt 47 |||||||||||||||||||| Sbjct: 2107138 tctccttcttctccaacctt 2107119
>emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genome; segment 5/16 Length = 349737 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 514 ccacgcgcacgccgacgcag 533 |||||||||||||||||||| Sbjct: 285498 ccacgcgcacgccgacgcag 285479
>emb|AL663010.4|OSJN00211 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0065J09, complete sequence Length = 117443 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 560 cctccggcaggccggcctcg 579 |||||||||||||||||||| Sbjct: 75770 cctccggcaggccggcctcg 75789
>gb|AE012516.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 424 of 460 of the complete genome Length = 10866 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 gcggcggccgcggccgtggg 283 |||||||||||||||||||| Sbjct: 7631 gcggcggccgcggccgtggg 7650
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 ctgtcgtcgtcggcgtcggc 256 |||||||||||||||||||| Sbjct: 15947789 ctgtcgtcgtcggcgtcggc 15947808
>gb|AC157935.3| Mus musculus chromosome 5, clone RP24-228K8, complete sequence Length = 147812 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 aggagaggaagaaaggggtt 422 |||||||||||||||||||| Sbjct: 9923 aggagaggaagaaaggggtt 9904
>gb|AY196776.1| Malus xiaojinensis transcription factor Myb1 mRNA, complete cds Length = 909 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 416 aggggttccatggactgaggacgagcac 443 ||||||||||||||| ||||| |||||| Sbjct: 261 aggggttccatggacggaggaagagcac 288
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 496 tctcccggcacttcgtcacc 515 |||||||||||||||||||| Sbjct: 3981735 tctcccggcacttcgtcacc 3981716
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 564 cggcaggccggcctcgcgca 583 |||||||||||||||||||| Sbjct: 1479910 cggcaggccggcctcgcgca 1479891
>dbj|AP005565.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1238_G07 Length = 78304 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 237 ctgtcgtcgtcggcgtcggc 256 |||||||||||||||||||| Sbjct: 18502 ctgtcgtcgtcggcgtcggc 18521
>dbj|AB013392.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19 Length = 84129 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 416 aggggttccatggactgaggacgagcaccgga 447 ||||||||||||||| | ||| |||||||||| Sbjct: 79583 aggggttccatggacggcggaagagcaccgga 79614
>ref|XM_553017.1| Anopheles gambiae str. PEST ENSANGP00000025821 (ENSANGG00000024557), partial mRNA Length = 1044 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 521 cacgccgacgcaggtggcca 540 |||||||||||||||||||| Sbjct: 345 cacgccgacgcaggtggcca 364
>gb|AC155259.1| Mus musculus BAC clone RP24-70C15 from 9, complete sequence Length = 222729 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 340 tggaggagagcccggagaagatgg 363 ||||||||| |||||||||||||| Sbjct: 110058 tggaggagaccccggagaagatgg 110081
>dbj|AB070950.1| Streptomyces avermitilis peptide-1 biosynthetic gene cluster Length = 21391 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 tctcccggcacttcgtcacc 515 |||||||||||||||||||| Sbjct: 14457 tctcccggcacttcgtcacc 14476 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,035,959 Number of Sequences: 3902068 Number of extensions: 4035959 Number of successful extensions: 102551 Number of sequences better than 10.0: 144 Number of HSP's better than 10.0 without gapping: 152 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 99790 Number of HSP's gapped (non-prelim): 2764 length of query: 589 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 566 effective length of database: 17,143,297,704 effective search space: 9703106500464 effective search space used: 9703106500464 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
