ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal23i06 |
|---|---|
| Clone Library Name | barley_pub |
>PA2G6_RAT (P97570) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 751 Score = 37.0 bits (84), Expect = 0.048 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = -3 Query: 527 LEVTDLLRGVPGQEDIHLGLELDQRSCLHGEEQVACVRAVPSEHLPTVVH 378 L++TDL+R P HL +EL R C H + C + +E T +H Sbjct: 107 LQLTDLIRNHPSWTVTHLAVELGIRECFHHSRIITCANSTENEEGCTPLH 156
>PA2G6_MOUSE (P97819) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 752 Score = 35.8 bits (81), Expect = 0.11 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Frame = -3 Query: 551 SVEVAALDL--EVTDLLRGVPGQEDIHLGLELDQRSCLHGEEQVACVRAVPSEHLPTVVH 378 SV+V +++ +TDL+R P HL +EL R C H ++C + +E T +H Sbjct: 98 SVQVLHVEVLQHLTDLIRNHPSWTVTHLAVELGIRECFHHSRIISCANSTENEEGCTPLH 157
>PA2G6_HUMAN (O60733) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 806 Score = 35.0 bits (79), Expect = 0.18 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = -3 Query: 521 VTDLLRGVPGQEDIHLGLELDQRSCLHGEEQVACVRAVPSEHLPTVVH 378 +TDL+R P HL +EL R C H ++C +E T +H Sbjct: 110 LTDLIRNHPSWSVAHLAVELGIRECFHHSRIISCANCAENEEGCTPLH 157
>LRC56_MOUSE (Q8K375) Leucine-rich repeat-containing protein 56| Length = 552 Score = 33.1 bits (74), Expect = 0.70 Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Frame = +2 Query: 26 QARAPNPSP-EQAEQTPPATHRLPPRSCSEAPRTDG 130 QA+ P P EQ +QT P T PPR SE RT G Sbjct: 409 QAQDPQKDPVEQEDQTGPKTSLTPPRLVSELSRTSG 444
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 33.1 bits (74), Expect = 0.70 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 8/53 (15%) Frame = +2 Query: 2 RGPSGETRQARAPNPSPEQAEQTP--------PATHRLPPRSCSEAPRTDGDG 136 R S + R++R+P+ SP++ +++P P+ P RS S +P +GDG Sbjct: 258 RSRSADNRKSRSPSRSPKKVDRSPSPPRGSRSPSEKGSPRRSRSASPMDNGDG 310
>PTG3C_STRPN (P35595) PTS system glucose-specific EIICBA component (EIICBA-Glc)| (EII-Glc/EIII-Glc) [Includes: Glucose permease IIC component (PTS system glucose-specific EIIC component); Glucose-specific phosphotransferase enzyme IIB component (EC 2.7.1.6 Length = 726 Score = 32.3 bits (72), Expect = 1.2 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 11/81 (13%) Frame = +3 Query: 231 LSDGXFAIIDANGAVVLKVKGAIFSI-----------RSRRTILDGAGMPLLTMQEKAFS 377 + DG FA+ ANG +V V G + SI + +L G+ ++++ K F+ Sbjct: 604 MGDG-FAVEPANGNIVSPVSGTVSSIFPTKHAFGIVTEAGLEVLVHIGLDTVSLEGKPFT 662 Query: 378 MHHRWQVFRGDSTNAGDLLFT 440 +H V G AGDLL T Sbjct: 663 VH----VAEGQKVAAGDLLVT 679
>FMN2_MOUSE (Q9JL04) Formin-2| Length = 1567 Score = 32.0 bits (71), Expect = 1.6 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +2 Query: 20 TRQARAPNPSPEQAEQTPPATHRLPPRSCSEAPRT 124 TRQ +PN SP Q+ P + P S S +PRT Sbjct: 400 TRQLSSPNHSPSQSPNQSPRIKKRPDPSVSPSPRT 434
>POLG_DEN1T (P29983) Genome polyprotein [Contains: Envelope protein M (Matrix| protein); Major envelope protein E; Nonstructural protein 1 (NS1)] (Fragment) Length = 555 Score = 31.6 bits (70), Expect = 2.0 Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 11/64 (17%) Frame = +3 Query: 291 GAIFSIRSRRTILDGAGMPLLTMQEKAFSMHHRWQV------FRGDST-----NAGDLLF 437 GA+ S RT LD M LLTM+EK++ +H +W + G ST N DLL Sbjct: 228 GALTLDCSPRTGLDFNEMVLLTMKEKSWLVHKQWFLDLPLPWTSGASTSQETWNRQDLLV 287 Query: 438 TVKT 449 T KT Sbjct: 288 TFKT 291
>POLG_DEN1S (P33478) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3396 Score = 31.6 bits (70), Expect = 2.0 Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 11/64 (17%) Frame = +3 Query: 291 GAIFSIRSRRTILDGAGMPLLTMQEKAFSMHHRWQV------FRGDST-----NAGDLLF 437 GA+ S RT LD M LLTM+EK++ +H +W + G ST N DLL Sbjct: 459 GALTLDCSPRTGLDFNEMVLLTMKEKSWLVHKQWFLDLPLPWTSGASTSQETWNRQDLLV 518 Query: 438 TVKT 449 T KT Sbjct: 519 TFKT 522
>SATB1_MOUSE (Q60611) DNA-binding protein SATB1 (Special AT-rich| sequence-binding protein 1) Length = 764 Score = 30.4 bits (67), Expect = 4.5 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +2 Query: 17 ETRQARAPNPSPEQAEQTPPATHRLPPRSCSEAPRTDGD 133 + +Q + P P P Q + P A RLPPR + A + D Sbjct: 601 QQQQQQQPPPPPPQPQPQPQAGPRLPPRQPTVASSAESD 639
>POLG_DEN1W (P17763) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A)] (Fragment) Length = 1226 Score = 30.4 bits (67), Expect = 4.5 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 11/64 (17%) Frame = +3 Query: 291 GAIFSIRSRRTILDGAGMPLLTMQEKAFSMHHRWQV------FRGDST-----NAGDLLF 437 GA+ S RT LD M LLTM++K++ +H +W + G ST N DLL Sbjct: 459 GALTLDCSPRTGLDFNEMVLLTMEKKSWLVHKQWFLDLPLPWTSGASTSQETWNRQDLLV 518 Query: 438 TVKT 449 T KT Sbjct: 519 TFKT 522
>MSA2_PLAF7 (P50498) Merozoite surface antigen 2 precursor (MSA-2) (45 kDa| merozoite surface antigen) Length = 272 Score = 30.4 bits (67), Expect = 4.5 Identities = 13/44 (29%), Positives = 18/44 (40%) Frame = +2 Query: 8 PSGETRQARAPNPSPEQAEQTPPATHRLPPRSCSEAPRTDGDGQ 139 P + ++P PEQAE + P + AP G GQ Sbjct: 164 PPTQDADTKSPTAQPEQAENSAPTAEQTESPELQSAPENKGTGQ 207
>MSA2_PLAF2 (Q03646) Merozoite surface antigen 2 precursor (MSA-2)| Length = 347 Score = 30.4 bits (67), Expect = 4.5 Identities = 13/44 (29%), Positives = 18/44 (40%) Frame = +2 Query: 8 PSGETRQARAPNPSPEQAEQTPPATHRLPPRSCSEAPRTDGDGQ 139 P + ++P PEQAE + P + AP G GQ Sbjct: 239 PRTQDADTKSPTAQPEQAENSAPTAEQTESPELQSAPENKGTGQ 282
>ELOA2_HUMAN (Q8IYF1) RNA polymerase II transcription factor SIII subunit A2| (Elongin A2) (EloA2) (Transcription elongation factor B polypeptide 3B) Length = 753 Score = 30.4 bits (67), Expect = 4.5 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%) Frame = +2 Query: 32 RAPNPSPEQ---AEQTPPATHRLPPRSCSEAPRTD 127 R+P+ SPE A +TPP R PRS S PR + Sbjct: 120 RSPSHSPEHRRTARRTPPGQQRPHPRSHSREPRAE 154
>MSA2_PLAF6 (P50497) Merozoite surface antigen 2 precursor (MSA-2)| Length = 274 Score = 30.4 bits (67), Expect = 4.5 Identities = 13/44 (29%), Positives = 18/44 (40%) Frame = +2 Query: 8 PSGETRQARAPNPSPEQAEQTPPATHRLPPRSCSEAPRTDGDGQ 139 P + ++P PEQAE + P + AP G GQ Sbjct: 166 PPTQDADTKSPTAQPEQAENSAPTAEQTESPELQSAPENKGTGQ 209
>MSA2_PLAFZ (Q03645) Merozoite surface antigen 2 precursor (MSA-2)| Length = 300 Score = 30.4 bits (67), Expect = 4.5 Identities = 13/44 (29%), Positives = 18/44 (40%) Frame = +2 Query: 8 PSGETRQARAPNPSPEQAEQTPPATHRLPPRSCSEAPRTDGDGQ 139 P + ++P PEQAE + P + AP G GQ Sbjct: 192 PRTQDADTKSPTAQPEQAENSAPTAEQTESPELQSAPENKGTGQ 235
>MSA2_PLAFI (Q03644) Merozoite surface antigen 2 precursor (MSA-2)| Length = 300 Score = 30.4 bits (67), Expect = 4.5 Identities = 13/44 (29%), Positives = 18/44 (40%) Frame = +2 Query: 8 PSGETRQARAPNPSPEQAEQTPPATHRLPPRSCSEAPRTDGDGQ 139 P + ++P PEQAE + P + AP G GQ Sbjct: 192 PRTQDADTKSPTAQPEQAENSAPTAEQTESPELQSAPENKGTGQ 235
>MSA2_PLAFG (P19260) Merozoite surface antigen 2 precursor (MSA-2) (Allelic| form 2) (Membrane protein PF7) Length = 287 Score = 30.4 bits (67), Expect = 4.5 Identities = 13/44 (29%), Positives = 18/44 (40%) Frame = +2 Query: 8 PSGETRQARAPNPSPEQAEQTPPATHRLPPRSCSEAPRTDGDGQ 139 P + ++P PEQAE + P + AP G GQ Sbjct: 179 PPTQDADTKSPTAQPEQAENSAPTAEQTESPELQSAPENKGTGQ 222
>MSA2_PLAF1 (P50496) Merozoite surface antigen 2 precursor (MSA-2)| Length = 286 Score = 30.4 bits (67), Expect = 4.5 Identities = 13/44 (29%), Positives = 18/44 (40%) Frame = +2 Query: 8 PSGETRQARAPNPSPEQAEQTPPATHRLPPRSCSEAPRTDGDGQ 139 P + ++P PEQAE + P + AP G GQ Sbjct: 178 PPTQDADTKSPTAQPEQAENSAPTAEQTESPELQSAPENKGTGQ 221
>MSA2_PLAFH (Q99319) Merozoite surface antigen 2 precursor (MSA-2) (Allelic| form 3) Length = 281 Score = 30.4 bits (67), Expect = 4.5 Identities = 13/44 (29%), Positives = 18/44 (40%) Frame = +2 Query: 8 PSGETRQARAPNPSPEQAEQTPPATHRLPPRSCSEAPRTDGDGQ 139 P + ++P PEQAE + P + AP G GQ Sbjct: 173 PPTQDADTKSPTAQPEQAENSAPTAEQTESPELQSAPENKGTGQ 216
>MSA2_PLAFC (Q99317) Merozoite surface antigen 2 precursor (MSA-2) (Allelic| form 1) Length = 262 Score = 30.4 bits (67), Expect = 4.5 Identities = 13/44 (29%), Positives = 18/44 (40%) Frame = +2 Query: 8 PSGETRQARAPNPSPEQAEQTPPATHRLPPRSCSEAPRTDGDGQ 139 P + ++P PEQAE + P + AP G GQ Sbjct: 154 PPTQDADTKSPTAQPEQAENSAPTAEQTESPELQSAPENKGTGQ 197
>MSA2_PLAF9 (Q03994) Merozoite surface antigen 2 precursor (MSA-2)| Length = 302 Score = 30.4 bits (67), Expect = 4.5 Identities = 13/44 (29%), Positives = 18/44 (40%) Frame = +2 Query: 8 PSGETRQARAPNPSPEQAEQTPPATHRLPPRSCSEAPRTDGDGQ 139 P + ++P PEQAE + P + AP G GQ Sbjct: 194 PRTQDADTKSPTAQPEQAENSAPTAEQTESPELQSAPENKGTGQ 237
>POLG_DEN18 (P27910) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1)] (Fragment) Length = 792 Score = 30.4 bits (67), Expect = 4.5 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 11/64 (17%) Frame = +3 Query: 291 GAIFSIRSRRTILDGAGMPLLTMQEKAFSMHHRWQV------FRGDST-----NAGDLLF 437 GA+ S RT LD M LLTM++K++ +H +W + G ST N DLL Sbjct: 459 GALTLDCSPRTGLDFNRMVLLTMEKKSWLVHKQWFLDLPLPWTSGASTSQETWNRQDLLV 518 Query: 438 TVKT 449 T KT Sbjct: 519 TFKT 522
>ELOA3_HUMAN (Q8NG57) RNA polymerase II transcription factor SIII subunit A3| (Elongin A3) (EloA3) (Transcription elongation factor B polypeptide 3C) Length = 546 Score = 30.4 bits (67), Expect = 4.5 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%) Frame = +2 Query: 32 RAPNPSPEQ---AEQTPPATHRLPPRSCSEAPRTD 127 R+P+ SPE A +TPP R PRS S PR + Sbjct: 120 RSPSHSPEHRRTARRTPPGQQRPHPRSPSREPRAE 154
>MSA2_PLAF8 (Q99320) Merozoite surface antigen 2 precursor (MSA-2) (Allelic| form 4) Length = 276 Score = 30.0 bits (66), Expect = 5.9 Identities = 13/44 (29%), Positives = 18/44 (40%) Frame = +2 Query: 8 PSGETRQARAPNPSPEQAEQTPPATHRLPPRSCSEAPRTDGDGQ 139 P + ++P PEQAE + P + AP G GQ Sbjct: 168 PPTQDADTKSPTAQPEQAENSAPIAEQTESPELQSAPENKGTGQ 211
>FMN2_HUMAN (Q9NZ56) Formin-2 (Fragments)| Length = 632 Score = 30.0 bits (66), Expect = 5.9 Identities = 15/35 (42%), Positives = 17/35 (48%) Frame = +2 Query: 20 TRQARAPNPSPEQAEQTPPATHRLPPRSCSEAPRT 124 TRQ +PN SP Q+ P R P S S RT Sbjct: 28 TRQLSSPNHSPSQSPNQSPRIKRRPEPSLSRGSRT 62 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,227,889 Number of Sequences: 219361 Number of extensions: 1219300 Number of successful extensions: 5872 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 5258 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5817 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5824436538 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
