ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal23i03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1S15A2_RAT (Q63424) Oligopeptide transporter, kidney isoform (Pep... 32 0.73
2S15A2_MOUSE (Q9ES07) Oligopeptide transporter, kidney isoform (P... 30 4.7
3NICE1_HUMAN (Q9UGL9) Protein NICE-1 30 4.7
4NHS_HUMAN (Q6T4R5) Nance-Horan syndrome protein (Congenital cata... 29 8.1

>S15A2_RAT (Q63424) Oligopeptide transporter, kidney isoform (Peptide|
           transporter 2) (Kidney H(+)/peptide cotransporter)
           (Solute carrier family 15 member 2)
          Length = 729

 Score = 32.3 bits (72), Expect = 0.73
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 125 MGPLSSQERRLVYLIPMSTARFLPRP--PPKAGVGRIGGTSIP 3
           M P    E +     P+ST   LPRP  PPK    +I G+S P
Sbjct: 1   MNPFQKNESKETLFSPVSTEEMLPRPPSPPKKSPPKIFGSSYP 43



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>S15A2_MOUSE (Q9ES07) Oligopeptide transporter, kidney isoform (Peptide|
           transporter 2) (Kidney H(+)/peptide cotransporter)
           (Solute carrier family 15 member 2)
          Length = 729

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -1

Query: 125 MGPLSSQERRLVYLIPMSTARFLPRP--PPKAGVGRIGGTSIP 3
           M P    E +     P+ST   LP P  PPK    ++ G+S P
Sbjct: 1   MNPFQKNESKETLFSPVSTEEMLPGPPSPPKKSTPKLFGSSYP 43



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>NICE1_HUMAN (Q9UGL9) Protein NICE-1|
          Length = 99

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
 Frame = -2

Query: 277 TPAPASASPC-----GCCPWSAACTGSS 209
           TPAPAS+S C     GCC  S  C  SS
Sbjct: 30  TPAPASSSSCCGSGRGCCGDSGCCGSSS 57



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>NHS_HUMAN (Q6T4R5) Nance-Horan syndrome protein (Congenital cataracts and|
           dental anomalies protein)
          Length = 1630

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +3

Query: 96  PPLLRAEGPHQRRQVHAIPPH---RALRLPQRLRPHPH**GEEPVQA-ADQGQHPHGDA 260
           PP L+  G     +V A  P    RA+  P  L P P      P+ A ADQ Q PHG+A
Sbjct: 35  PPPLQPPGRRDLDEVEAPGPEEPARAVPAPSGLPPPP-----PPLPAPADQTQPPHGEA 88


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,072,111
Number of Sequences: 219361
Number of extensions: 1086699
Number of successful extensions: 3675
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3670
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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