ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal23i01 |
|---|---|
| Clone Library Name | barley_pub |
>GSTU6_ORYSA (Q06398) Probable glutathione S-transferase GSTU6 (EC 2.5.1.18) (28| kDa cold-induced protein) Length = 236 Score = 35.0 bits (79), Expect = 0.044 Identities = 14/22 (63%), Positives = 17/22 (77%) Frame = +3 Query: 306 LKLLGTWRGPFALRVRLALNFK 371 LKLLG W P+A+RVR+ LN K Sbjct: 7 LKLLGVWSSPYAIRVRVVLNLK 28
>GSTXA_ARATH (P46421) Glutathione S-transferase 103-1A (EC 2.5.1.18)| Length = 224 Score = 29.6 bits (65), Expect = 1.9 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = +3 Query: 306 LKLLGTWRGPFALRVRLALNFK 371 +KLLG W PF+ RV +AL K Sbjct: 7 VKLLGIWASPFSRRVEMALKLK 28
>TRI29_MOUSE (Q8R2Q0) Tripartite motif protein 29| Length = 587 Score = 28.5 bits (62), Expect = 4.2 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Frame = +3 Query: 135 ARSRPPVIIAGRCSSARFVFSSPSANTKLIV-PSSSTNNPYPATD 266 A +PPV A + + +FS P T IV P N YP D Sbjct: 113 ASKKPPVTFAEKGELRKSIFSEPRKPTVTIVEPGEVRRNSYPRAD 157
>YMI3_YEAST (Q04526) Hypothetical 47.3 kDa protein in TUB1-CPR3 intergenic| region Length = 418 Score = 28.5 bits (62), Expect = 4.2 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = +3 Query: 147 PPVIIA-GRCSSARFVFSSPSANTKLIVPSSSTNNP 251 PP+I+A + S F +SSP I+PS STN P Sbjct: 29 PPIILALDQQHSLTFGYSSPRCLPTPILPSMSTNTP 64
>MAST3_HUMAN (O60307) Microtubule-associated serine/threonine-protein kinase 3 (EC| 2.7.11.1) Length = 1309 Score = 28.1 bits (61), Expect = 5.4 Identities = 20/62 (32%), Positives = 26/62 (41%) Frame = +3 Query: 72 HTRAMALHGLVLPNSLVVLTAARSRPPVIIAGRCSSARFVFSSPSANTKLIVPSSSTNNP 251 HTR +LHGL AA+ PP GR S + SP A + P + +P Sbjct: 1155 HTRPSSLHGL----------AAKLGPPRPKTGRRKSTSSIPPSPLACPPISAPPPRSPSP 1204 Query: 252 YP 257 P Sbjct: 1205 LP 1206
>CARD8_HUMAN (Q9Y2G2) Caspase recruitment domain-containing protein 8 (Apoptotic| protein NDPP1) (DACAR) (CARD-inhibitor of NF-kappaB-activating ligand) (CARDINAL) (Tumor-up-regulated CARD-containing antagonist of CASP9) (TUCAN) Length = 431 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/37 (32%), Positives = 19/37 (51%) Frame = -3 Query: 256 GYGLLVEDEGTMSLVFADGEENTKRALEHRPAIITGG 146 G G LV DE T+++ F ++ L+H + GG Sbjct: 91 GLGFLVRDEVTVTIAFGSWSQHLALDLQHHEQWLVGG 127
>MSI4_ARATH (O22607) WD-40 repeat protein MSI4 (Altered cold-responsive gene 1| protein) Length = 507 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +3 Query: 108 PNSLVVLTAARSRPPVIIAGRCSSARFVFS 197 PN VL AA SRP +I+ G +A F + Sbjct: 198 PNRHAVLGAANSRPDLILTGHQDNAEFALA 227
>FTHS_LISMO (Q8Y624) Formate--tetrahydrofolate ligase (EC 6.3.4.3)| (Formyltetrahydrofolate synthetase) (FHS) (FTHFS) Length = 560 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = -3 Query: 232 EGTMSLVFADG-EENTKRALEHRPAIITGG 146 EG ++L+ D + N + LEH PAI+ GG Sbjct: 245 EGALTLLLKDALKPNLVQTLEHTPAIVHGG 274
>FTHS_LISMF (Q71YD9) Formate--tetrahydrofolate ligase (EC 6.3.4.3)| (Formyltetrahydrofolate synthetase) (FHS) (FTHFS) Length = 560 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = -3 Query: 232 EGTMSLVFADG-EENTKRALEHRPAIITGG 146 EG ++L+ D + N + LEH PAI+ GG Sbjct: 245 EGALTLLLKDALKPNLVQTLEHTPAIVHGG 274
>FTHS_LISIN (Q92AD2) Formate--tetrahydrofolate ligase (EC 6.3.4.3)| (Formyltetrahydrofolate synthetase) (FHS) (FTHFS) Length = 560 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = -3 Query: 232 EGTMSLVFADG-EENTKRALEHRPAIITGG 146 EG ++L+ D + N + LEH PAI+ GG Sbjct: 245 EGALTLLLKDALKPNLVQTLEHTPAIVHGG 274
>GSTX1_TOBAC (Q03662) Probable glutathione S-transferase (EC 2.5.1.18)| (Auxin-induced protein PGNT1/PCNT110) Length = 223 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = +3 Query: 306 LKLLGTWRGPFALRVRLALNFK 371 +KLLG W PF+ RV AL K Sbjct: 4 VKLLGFWYSPFSRRVEWALKIK 25
>MAAI_VIBCH (Q9KSB2) Probable maleylacetoacetate isomerase (EC 5.2.1.2) (MAAI)| Length = 215 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/22 (59%), Positives = 14/22 (63%) Frame = +3 Query: 306 LKLLGTWRGPFALRVRLALNFK 371 L L G WR A RVR+ALN K Sbjct: 4 LILYGYWRSSAAYRVRIALNIK 25
>RSP5_CAEEL (Q10021) Probable splicing factor, arginine/serine-rich 5| (RNA-binding protein srp-3) (CeSC35-2) Length = 208 Score = 27.3 bits (59), Expect = 9.3 Identities = 18/47 (38%), Positives = 26/47 (55%) Frame = +3 Query: 129 TAARSRPPVIIAGRCSSARFVFSSPSANTKLIVPSSSTNNPYPATDR 269 +++RSR PV + R S +R SPS L +S + +P PA DR Sbjct: 121 SSSRSRSPVRESRRRSESR----SPSPKRDLKREASRSRSPLPAKDR 163 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,499,196 Number of Sequences: 219361 Number of extensions: 761209 Number of successful extensions: 2159 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2127 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2158 length of database: 80,573,946 effective HSP length: 99 effective length of database: 58,857,207 effective search space used: 1412572968 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
