ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal23h10 |
|---|---|
| Clone Library Name | barley_pub |
>TPT2_BRAOB (P52178) Triose phosphate/phosphate translocator, non-green| plastid, chloroplast precursor (CTPT) Length = 402 Score = 142 bits (359), Expect = 4e-34 Identities = 70/116 (60%), Positives = 86/116 (74%) Frame = +3 Query: 75 EGDGKLEAAGIPRTLQLGAMILVWYLLNIYFNICNKLVLKAVPFPYTITTFQFASGSFFI 254 EG GK+ + L+LG + +WYL NIYFNI NK VLKA+ P T+T QFA GS I Sbjct: 91 EGSGKMT-----KVLELGLLFAMWYLFNIYFNIYNKQVLKALHAPMTVTLVQFAVGSVLI 145 Query: 255 TLMWLLNLHPKPRLSLQQYAKILPLALIHMMGNVFTNMSLGKVAVSFTHTIKAMEP 422 T MW LNL+ +P++S Q A ILPLA++H +GN+FTNMSLGKV+VSFTHTIKAMEP Sbjct: 146 TFMWALNLYKRPKISAAQLAAILPLAVVHTLGNLFTNMSLGKVSVSFTHTIKAMEP 201
>GPT1_ARATH (Q9M5A9) Glucose-6-phosphate/phosphate translocator 1, chloroplast| precursor Length = 388 Score = 90.9 bits (224), Expect = 2e-18 Identities = 45/126 (35%), Positives = 69/126 (54%) Frame = +3 Query: 87 KLEAAGIPRTLQLGAMILVWYLLNIYFNICNKLVLKAVPFPYTITTFQFASGSFFITLMW 266 K EAA + L++G W+ LN+ FNI NK VL A P+P+ +T A+GS + + W Sbjct: 88 KSEAA---KKLKIGIYFATWWALNVVFNIYNKKVLNAYPYPWLTSTLSLAAGSLMMLISW 144 Query: 267 LLNLHPKPRLSLQQYAKILPLALIHMMGNVFTNMSLGKVAVSFTHTIKAMEPXXXXXXXX 446 + + P+ + + P+A+ H +G+V +S+ KVAVSFTH IK+ EP Sbjct: 145 AVGIVETPKTDFDFWKTLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSR 204 Query: 447 XXXGQT 464 G+T Sbjct: 205 FILGET 210
>GPT2_ARATH (Q94B38) Glucose-6-phosphate/phosphate translocator 2, chloroplast| precursor Length = 388 Score = 90.5 bits (223), Expect = 3e-18 Identities = 42/116 (36%), Positives = 64/116 (55%) Frame = +3 Query: 117 LQLGAMILVWYLLNIYFNICNKLVLKAVPFPYTITTFQFASGSFFITLMWLLNLHPKPRL 296 L++G W+ LN+ FNI NK VL A P+P+ +T A GS + + W + P+ Sbjct: 95 LKIGIYFATWWALNVVFNIYNKKVLNAFPYPWLTSTLSLACGSLMMLVSWATRIADAPKT 154 Query: 297 SLQQYAKILPLALIHMMGNVFTNMSLGKVAVSFTHTIKAMEPXXXXXXXXXXXGQT 464 L+ + + P+A+ H +G+V +S+ KVAVSFTH IK+ EP G+T Sbjct: 155 DLEFWKTLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFFMGET 210
>TPT1_BRAOB (P52177) Triose phosphate/phosphate translocator, chloroplast| precursor (cTPT) Length = 407 Score = 87.4 bits (215), Expect = 2e-17 Identities = 43/128 (33%), Positives = 68/128 (53%) Frame = +3 Query: 78 GDGKLEAAGIPRTLQLGAMILVWYLLNIYFNICNKLVLKAVPFPYTITTFQFASGSFFIT 257 G+ K+ G L G ++L+WY LN+ FNI NK + P+PY ++ G + Sbjct: 90 GETKVGFLGKYPWLVTGILLLMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLFVGVVYCL 149 Query: 258 LMWLLNLHPKPRLSLQQYAKILPLALIHMMGNVFTNMSLGKVAVSFTHTIKAMEPXXXXX 437 + W + L + ++ ++P+A+ H +G+V +N+S VAVSFTHTIKA+EP Sbjct: 150 VSWSVGLPKRAPVNSDILKVLIPVAVCHAIGHVTSNVSFAAVAVSFTHTIKALEPFFNAS 209 Query: 438 XXXXXXGQ 461 GQ Sbjct: 210 ASQFLLGQ 217
>TPT_SOLTU (P29463) Triose phosphate/phosphate translocator, chloroplast| precursor (cTPT) (E29) Length = 414 Score = 85.9 bits (211), Expect = 6e-17 Identities = 40/116 (34%), Positives = 59/116 (50%) Frame = +3 Query: 114 TLQLGAMILVWYLLNIYFNICNKLVLKAVPFPYTITTFQFASGSFFITLMWLLNLHPKPR 293 TL G +WY LN+ FNI NK + P+PY ++ A G + + W + L + Sbjct: 109 TLTTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLAVGVVYCLVSWGVGLPKRAP 168 Query: 294 LSLQQYAKILPLALIHMMGNVFTNMSLGKVAVSFTHTIKAMEPXXXXXXXXXXXGQ 461 + Q + P+A H +G+V +N+S V VSFTHT+KA+EP GQ Sbjct: 169 IDSTQLKLLTPVAFCHALGHVTSNVSFAAVRVSFTHTVKALEPFFNAAASQFILGQ 224
>TPT_PEA (P21727) Triose phosphate/phosphate translocator, chloroplast| precursor (cTPT) (p36) (E30) Length = 402 Score = 85.5 bits (210), Expect = 8e-17 Identities = 39/116 (33%), Positives = 60/116 (51%) Frame = +3 Query: 117 LQLGAMILVWYLLNIYFNICNKLVLKAVPFPYTITTFQFASGSFFITLMWLLNLHPKPRL 296 L G WY LN+ FNI NK + P+PY ++ A G + + W + L + + Sbjct: 98 LTTGFFFFTWYFLNVIFNILNKKIYNYFPYPYFVSVIHLAVGVVYCLVSWTVGLPKRAPI 157 Query: 297 SLQQYAKILPLALIHMMGNVFTNMSLGKVAVSFTHTIKAMEPXXXXXXXXXXXGQT 464 ++P+A+ H +G+V +N+S VAVSFTHT+KA+EP GQ+ Sbjct: 158 DGNLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTVKALEPFFNAAASQFILGQS 213
>TPT_SPIOL (P11869) Triose phosphate/phosphate translocator, chloroplast| precursor (cTPT) (p36) (E29) Length = 404 Score = 84.3 bits (207), Expect = 2e-16 Identities = 39/116 (33%), Positives = 61/116 (52%) Frame = +3 Query: 117 LQLGAMILVWYLLNIYFNICNKLVLKAVPFPYTITTFQFASGSFFITLMWLLNLHPKPRL 296 L G+ +WY LN+ FNI NK + P+PY ++ G + W + L + + Sbjct: 100 LVTGSFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLFVGVVYCLASWSVGLPKRAPM 159 Query: 297 SLQQYAKILPLALIHMMGNVFTNMSLGKVAVSFTHTIKAMEPXXXXXXXXXXXGQT 464 + ++P+A+ H +G+V +N+S VAVSFTHTIKA+EP GQ+ Sbjct: 160 DSKLLKLLIPVAVCHAIGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFVLGQS 215
>TPT_FLAPR (P49131) Triose phosphate/phosphate translocator, chloroplast| precursor (cTPT) Length = 408 Score = 82.4 bits (202), Expect = 7e-16 Identities = 39/116 (33%), Positives = 59/116 (50%) Frame = +3 Query: 117 LQLGAMILVWYLLNIYFNICNKLVLKAVPFPYTITTFQFASGSFFITLMWLLNLHPKPRL 296 L G +WY LN+ FNI NK + P+PY ++ A G + W + L + + Sbjct: 104 LVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSAIHLAVGVVYCLGGWAVGLPKRAPM 163 Query: 297 SLQQYAKILPLALIHMMGNVFTNMSLGKVAVSFTHTIKAMEPXXXXXXXXXXXGQT 464 ++P+A H +G+V +N+S VAVSFTHTIK++EP GQ+ Sbjct: 164 DSNLLKLLIPVAFCHALGHVTSNVSFAAVAVSFTHTIKSLEPFFNAAASQFILGQS 219
>TPT_FLATR (P49132) Triose phosphate/phosphate translocator, chloroplast| precursor (cTPT) Length = 407 Score = 82.0 bits (201), Expect = 9e-16 Identities = 39/116 (33%), Positives = 58/116 (50%) Frame = +3 Query: 117 LQLGAMILVWYLLNIYFNICNKLVLKAVPFPYTITTFQFASGSFFITLMWLLNLHPKPRL 296 L G +WY LN+ FNI NK + P+PY ++ A G + W + L + + Sbjct: 103 LVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLAVGVVYCLGSWTVGLPKRAPV 162 Query: 297 SLQQYAKILPLALIHMMGNVFTNMSLGKVAVSFTHTIKAMEPXXXXXXXXXXXGQT 464 ++P+ H +G+V +N+S VAVSFTHTIKA+EP GQ+ Sbjct: 163 DSNILKLLIPVGFCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFVLGQS 218
>TPT_MAIZE (P49133) Triose phosphate/phosphate translocator, chloroplast| precursor (cTPT) Length = 409 Score = 80.9 bits (198), Expect = 2e-15 Identities = 38/115 (33%), Positives = 58/115 (50%) Frame = +3 Query: 117 LQLGAMILVWYLLNIYFNICNKLVLKAVPFPYTITTFQFASGSFFITLMWLLNLHPKPRL 296 L G +WY LN+ FNI NK + P+PY ++ G + + W + L + + Sbjct: 106 LVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSLIHLVVGVVYCLISWSVGLPKRAPI 165 Query: 297 SLQQYAKILPLALIHMMGNVFTNMSLGKVAVSFTHTIKAMEPXXXXXXXXXXXGQ 461 + + P+AL H +G++ +N+S VAVSF HTIKA+EP GQ Sbjct: 166 NGTLLKLLFPVALCHGIGHITSNVSFAAVAVSFAHTIKALEPFFSAAATQFILGQ 220
>HD_MOUSE (P42859) Huntingtin (Huntington disease protein homolog) (HD| protein) Length = 3119 Score = 32.3 bits (72), Expect = 0.83 Identities = 15/23 (65%), Positives = 16/23 (69%) Frame = -1 Query: 290 WLGMQIEQPHESDEEGAGCKLEG 222 +LGMQI QP E DEEGA L G Sbjct: 569 YLGMQIGQPQEDDEEGAAGVLSG 591
>PDR13_ORYSA (Q8S628) Pleiotropic drug resistance protein 13| Length = 1441 Score = 32.3 bits (72), Expect = 0.83 Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Frame = +3 Query: 204 FPYTITTFQFAS-GSFFITLMWLLNLHPKPRLSLQQYAKILPLALIHMMGNVFTNMSL 374 F YT T Q A G TL LHP + Y L L+HMM N FT M++ Sbjct: 523 FLYTFRTCQVAFVGIITSTLFLRTRLHPVDEQNGNLYLACLFFGLVHMMFNGFTEMTM 580
>PDR3_ARATH (Q7PC88) Probable pleiotropic drug resistance protein 3| Length = 1426 Score = 32.0 bits (71), Expect = 1.1 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 1/78 (1%) Frame = +3 Query: 144 WYLLNIYFNICNKLVLKAVPFPYTITTFQFAS-GSFFITLMWLLNLHPKPRLSLQQYAKI 320 W L + F + L++K F YT T Q G T+ LHP +Y Sbjct: 511 WENLKVCF-VRELLLIKRHKFLYTFRTCQVGFVGLVTATVFLKTRLHPTSEQFGNEYLSC 569 Query: 321 LPLALIHMMGNVFTNMSL 374 L L+HMM N F+ + L Sbjct: 570 LFFGLVHMMFNGFSELPL 587
>VIRD3_AGRT5 (P18593) Protein virD3| Length = 673 Score = 31.6 bits (70), Expect = 1.4 Identities = 23/72 (31%), Positives = 33/72 (45%) Frame = -3 Query: 522 MPTQLHRQPVRENLLPVKKVSARGARLRTEQRRRAPLP*WCA*RRQPPCPNSCW*RRCPS 343 +PT L R P+ + V++ SA G RL + R + +P P R S Sbjct: 46 VPTALSRPPIEDMPHGVQETSASGGRLGAARLRDSVIP-----------PGISEARTDLS 94 Query: 342 CVLRPKAGSLRT 307 +LR K+GS RT Sbjct: 95 AILRKKSGSFRT 106
>DEFR7_MOUSE (P50715) Defensin-related cryptdin, related sequence 7 precursor| (Cryptdin-related protein 4C-2) (CRS4C) Length = 91 Score = 30.0 bits (66), Expect = 4.1 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = -3 Query: 390 RQPPCPNSCW*RRCPSC 340 R PPCP W RCP+C Sbjct: 67 RCPPCPRCSWCPRCPTC 83
>HUWE1_HUMAN (Q7Z6Z7) HECT, UBA and WWE domain-containing protein 1 (EC 6.3.2.-)| (E3 ubiquitin protein ligase URE-B1) (Mcl-1 ubiquitin ligase E3) (Mule) (ARF-binding protein 1) (ARF-BP1) Length = 4374 Score = 29.6 bits (65), Expect = 5.4 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 9/75 (12%) Frame = +2 Query: 305 TVRKDPAFGLNTH------DGQRLHQHEFGQGGCLLHAHHQGNGAL---LLCSVLSLAPR 457 +V D A G T+ G R H + GG +H H Q + +L +++ LA Sbjct: 3287 SVSMDAALGCRTNIFQIQRSGGRKHTEKHASGGSTVHIHPQAAPVVCRHVLDTLIQLAKV 3346 Query: 458 ADTFFTGSRFSRTGC 502 + FT R T C Sbjct: 3347 FPSHFTQQRTKETNC 3361
>YIY4_SCHPO (Q9UUI8) Protein C22F8.04 in chromosome I| Length = 383 Score = 29.6 bits (65), Expect = 5.4 Identities = 20/79 (25%), Positives = 31/79 (39%) Frame = +3 Query: 159 IYFNICNKLVLKAVPFPYTITTFQFASGSFFITLMWLLNLHPKPRLSLQQYAKILPLALI 338 I I NK L + P + +FQ A S + + W + L L ++ + Sbjct: 101 ILVTILNKQALNIINAPLLMLSFQMAFTSLMVKMYWRFSSVHFQTLRLASAIQLKKFIFV 160 Query: 339 HMMGNVFTNMSLGKVAVSF 395 ++G V L V VSF Sbjct: 161 KILGIVSKTYCLAFVPVSF 179
>UREE_BURPS (Q63RL2) Urease accessory protein ureE| Length = 205 Score = 29.3 bits (64), Expect = 7.1 Identities = 10/25 (40%), Positives = 12/25 (48%) Frame = +2 Query: 341 HDGQRLHQHEFGQGGCLLHAHHQGN 415 HD H H+ G C H HH G+ Sbjct: 180 HDHDHDHDHDHQHGPCCSHGHHHGH 204
>TRK2_YEAST (P28584) Low-affinity potassium transport protein| Length = 889 Score = 28.9 bits (63), Expect = 9.2 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%) Frame = +3 Query: 267 LLNLHPKPRLS--LQQYAKILPLALIHMMGNVFTNMSLG 377 L LHP ++S L Y +LPLA+ NV+ SLG Sbjct: 652 LSKLHPSIQVSYMLMMYVSVLPLAISIRRTNVYEEQSLG 690
>TRK1_SACBA (P28569) High-affinity potassium transport protein| Length = 1241 Score = 28.9 bits (63), Expect = 9.2 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%) Frame = +3 Query: 267 LLNLHPKPRLS--LQQYAKILPLALIHMMGNVFTNMSLG 377 L LHP ++S L Y +LPLA+ NV+ SLG Sbjct: 971 LSQLHPSIQVSYMLMMYVSVLPLAISIRRTNVYEEQSLG 1009
>TRK1_YEAST (P12685) High-affinity potassium transport protein| Length = 1235 Score = 28.9 bits (63), Expect = 9.2 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%) Frame = +3 Query: 267 LLNLHPKPRLS--LQQYAKILPLALIHMMGNVFTNMSLG 377 L LHP ++S L Y +LPLA+ NV+ SLG Sbjct: 965 LSQLHPSIQVSYMLMMYVSVLPLAISIRRTNVYEEQSLG 1003 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,709,633 Number of Sequences: 219361 Number of extensions: 1153956 Number of successful extensions: 2991 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 2921 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2990 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4085413911 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
