| Clone Name | baal23h02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M61146.1|BLYPSAL Hordeum vulgare photosystem I protein (PSI-L) mRNA, complete cds Length = 777 Score = 866 bits (437), Expect = 0.0 Identities = 437/437 (100%) Strand = Plus / Plus Query: 2 gcctaccgcaccgccgtcagcccgctcctccgcggcatcgaggtcggcctcgcccatggc 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 280 gcctaccgcaccgccgtcagcccgctcctccgcggcatcgaggtcggcctcgcccatggc 339 Query: 62 tacctcctcgtcggccccttcgcgctcactggcccgctccgcaacacgcccgtgcacgga 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 340 tacctcctcgtcggccccttcgcgctcactggcccgctccgcaacacgcccgtgcacgga 399 Query: 122 caggccggcacactcggcgccatcggactcgtctccatcctcagcgtctgcctcaccatg 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 400 caggccggcacactcggcgccatcggactcgtctccatcctcagcgtctgcctcaccatg 459 Query: 182 tacggcgtcgcctccttcaacgagggcgagccgtccaccgcgccggtgctcaccctcacc 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 460 tacggcgtcgcctccttcaacgagggcgagccgtccaccgcgccggtgctcaccctcacc 519 Query: 242 ggacgcaagaaggaggccgacaagctccagaccgccgaagggtggtcgcagttcaccgga 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 520 ggacgcaagaaggaggccgacaagctccagaccgccgaagggtggtcgcagttcaccgga 579 Query: 302 ggcttcttcttcggcggtgtatccggcgccgtctgggcatacttcctcctctacgtgctc 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 580 ggcttcttcttcggcggtgtatccggcgccgtctgggcatacttcctcctctacgtgctc 639 Query: 362 gacctcccatacttcttcaagtagattaataggtggcatgcatgtacgatgtctccagat 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 640 gacctcccatacttcttcaagtagattaataggtggcatgcatgtacgatgtctccagat 699 Query: 422 catgccatctcttctcg 438 ||||||||||||||||| Sbjct: 700 catgccatctcttctcg 716
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 482 bits (243), Expect = e-133 Identities = 348/383 (90%) Strand = Plus / Plus Query: 5 taccgcaccgccgtcagcccgctcctccgcggcatcgaggtcggcctcgcccatggctac 64 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct: 13161001 taccgcaccgccgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctac 13161060 Query: 65 ctcctcgtcggccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggacag 124 ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct: 13161061 ctcctcgtcgggcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccag 13161120 Query: 125 gccggcacactcggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgtac 184 |||||| | ||||||||| || |||||| ||||||||||||||||||||||||||||| Sbjct: 13161121 gccggcgccctcggcgccgcaggcctcgtcgccatcctcagcgtctgcctcaccatgtac 13161180 Query: 185 ggcgtcgcctccttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccgga 244 ||||||||||||||| |||||||||||||||||| |||||| ||| || |||||||| Sbjct: 13161181 ggcgtcgcctccttcggcgagggcgagccgtccacggcgccgacgctgacgctcaccggc 13161240 Query: 245 cgcaagaaggaggccgacaagctccagaccgccgaagggtggtcgcagttcaccggaggc 304 ||||||||||||||||||||||| ||||||||||| || ||| | |||||||||| ||| Sbjct: 13161241 cgcaagaaggaggccgacaagctgcagaccgccgacggctgggccaagttcaccggcggc 13161300 Query: 305 ttcttcttcggcggtgtatccggcgccgtctgggcatacttcctcctctacgtgctcgac 364 |||||||||||||| | ||||||| | ||||||| |||||||||||||||||||||||| Sbjct: 13161301 ttcttcttcggcggcatctccggcgtcctctgggcctacttcctcctctacgtgctcgac 13161360 Query: 365 ctcccatacttcttcaagtagat 387 ||||| ||||||||||||||||| Sbjct: 13161361 ctcccgtacttcttcaagtagat 13161383
>dbj|AK119162.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-D08, full insert sequence Length = 923 Score = 482 bits (243), Expect = e-133 Identities = 348/383 (90%) Strand = Plus / Plus Query: 5 taccgcaccgccgtcagcccgctcctccgcggcatcgaggtcggcctcgcccatggctac 64 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct: 367 taccgcaccgccgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctac 426 Query: 65 ctcctcgtcggccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggacag 124 ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct: 427 ctcctcgtcgggcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccag 486 Query: 125 gccggcacactcggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgtac 184 |||||| | ||||||||| || |||||| ||||||||||||||||||||||||||||| Sbjct: 487 gccggcgccctcggcgccgcaggcctcgtcgccatcctcagcgtctgcctcaccatgtac 546 Query: 185 ggcgtcgcctccttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccgga 244 ||||||||||||||| |||||||||||||||||| |||||| ||| || |||||||| Sbjct: 547 ggcgtcgcctccttcggcgagggcgagccgtccacggcgccgacgctgacgctcaccggc 606 Query: 245 cgcaagaaggaggccgacaagctccagaccgccgaagggtggtcgcagttcaccggaggc 304 ||||||||||||||||||||||| ||||||||||| || ||| | |||||||||| ||| Sbjct: 607 cgcaagaaggaggccgacaagctgcagaccgccgacggctgggccaagttcaccggcggc 666 Query: 305 ttcttcttcggcggtgtatccggcgccgtctgggcatacttcctcctctacgtgctcgac 364 |||||||||||||| | ||||||| | ||||||| |||||||||||||||||||||||| Sbjct: 667 ttcttcttcggcggcatctccggcgtcctctgggcctacttcctcctctacgtgctcgac 726 Query: 365 ctcccatacttcttcaagtagat 387 ||||| ||||||||||||||||| Sbjct: 727 ctcccgtacttcttcaagtagat 749
>dbj|AK099109.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F01, full insert sequence Length = 932 Score = 482 bits (243), Expect = e-133 Identities = 348/383 (90%) Strand = Plus / Plus Query: 5 taccgcaccgccgtcagcccgctcctccgcggcatcgaggtcggcctcgcccatggctac 64 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct: 317 taccgcaccgccgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctac 376 Query: 65 ctcctcgtcggccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggacag 124 ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct: 377 ctcctcgtcgggcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccag 436 Query: 125 gccggcacactcggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgtac 184 |||||| | ||||||||| || |||||| ||||||||||||||||||||||||||||| Sbjct: 437 gccggcgccctcggcgccgcaggcctcgtcgccatcctcagcgtctgcctcaccatgtac 496 Query: 185 ggcgtcgcctccttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccgga 244 ||||||||||||||| |||||||||||||||||| |||||| ||| || |||||||| Sbjct: 497 ggcgtcgcctccttcggcgagggcgagccgtccacggcgccgacgctgacgctcaccggc 556 Query: 245 cgcaagaaggaggccgacaagctccagaccgccgaagggtggtcgcagttcaccggaggc 304 ||||||||||||||||||||||| ||||||||||| || ||| | |||||||||| ||| Sbjct: 557 cgcaagaaggaggccgacaagctgcagaccgccgacggctgggccaagttcaccggcggc 616 Query: 305 ttcttcttcggcggtgtatccggcgccgtctgggcatacttcctcctctacgtgctcgac 364 |||||||||||||| | ||||||| | ||||||| |||||||||||||||||||||||| Sbjct: 617 ttcttcttcggcggcatctccggcgtcctctgggcctacttcctcctctacgtgctcgac 676 Query: 365 ctcccatacttcttcaagtagat 387 ||||| ||||||||||||||||| Sbjct: 677 ctcccgtacttcttcaagtagat 699
>dbj|AK059750.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-B01, full insert sequence Length = 985 Score = 482 bits (243), Expect = e-133 Identities = 348/383 (90%) Strand = Plus / Plus Query: 5 taccgcaccgccgtcagcccgctcctccgcggcatcgaggtcggcctcgcccatggctac 64 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct: 339 taccgcaccgccgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctac 398 Query: 65 ctcctcgtcggccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggacag 124 ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct: 399 ctcctcgtcgggcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccag 458 Query: 125 gccggcacactcggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgtac 184 |||||| | ||||||||| || |||||| ||||||||||||||||||||||||||||| Sbjct: 459 gccggcgccctcggcgccgcaggcctcgtcgccatcctcagcgtctgcctcaccatgtac 518 Query: 185 ggcgtcgcctccttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccgga 244 ||||||||||||||| |||||||||||||||||| |||||| ||| || |||||||| Sbjct: 519 ggcgtcgcctccttcggcgagggcgagccgtccacggcgccgacgctgacgctcaccggc 578 Query: 245 cgcaagaaggaggccgacaagctccagaccgccgaagggtggtcgcagttcaccggaggc 304 ||||||||||||||||||||||| ||||||||||| || ||| | |||||||||| ||| Sbjct: 579 cgcaagaaggaggccgacaagctgcagaccgccgacggctgggccaagttcaccggcggc 638 Query: 305 ttcttcttcggcggtgtatccggcgccgtctgggcatacttcctcctctacgtgctcgac 364 |||||||||||||| | ||||||| | ||||||| |||||||||||||||||||||||| Sbjct: 639 ttcttcttcggcggcatctccggcgtcctctgggcctacttcctcctctacgtgctcgac 698 Query: 365 ctcccatacttcttcaagtagat 387 ||||| ||||||||||||||||| Sbjct: 699 ctcccgtacttcttcaagtagat 721
>dbj|AK058207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-A09, full insert sequence Length = 923 Score = 482 bits (243), Expect = e-133 Identities = 348/383 (90%) Strand = Plus / Plus Query: 5 taccgcaccgccgtcagcccgctcctccgcggcatcgaggtcggcctcgcccatggctac 64 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct: 367 taccgcaccgccgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctac 426 Query: 65 ctcctcgtcggccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggacag 124 ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct: 427 ctcctcgtcgggcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccag 486 Query: 125 gccggcacactcggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgtac 184 |||||| | ||||||||| || |||||| ||||||||||||||||||||||||||||| Sbjct: 487 gccggcgccctcggcgccgcaggcctcgtcgccatcctcagcgtctgcctcaccatgtac 546 Query: 185 ggcgtcgcctccttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccgga 244 ||||||||||||||| |||||||||||||||||| |||||| ||| || |||||||| Sbjct: 547 ggcgtcgcctccttcggcgagggcgagccgtccacggcgccgacgctgacgctcaccggc 606 Query: 245 cgcaagaaggaggccgacaagctccagaccgccgaagggtggtcgcagttcaccggaggc 304 ||||||||||||||||||||||| ||||||||||| || ||| | |||||||||| ||| Sbjct: 607 cgcaagaaggaggccgacaagctgcagaccgccgacggctgggccaagttcaccggcggc 666 Query: 305 ttcttcttcggcggtgtatccggcgccgtctgggcatacttcctcctctacgtgctcgac 364 |||||||||||||| | ||||||| | ||||||| |||||||||||||||||||||||| Sbjct: 667 ttcttcttcggcggcatctccggcgtcctctgggcctacttcctcctctacgtgctcgac 726 Query: 365 ctcccatacttcttcaagtagat 387 ||||| ||||||||||||||||| Sbjct: 727 ctcccgtacttcttcaagtagat 749
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 482 bits (243), Expect = e-133 Identities = 348/383 (90%) Strand = Plus / Plus Query: 5 taccgcaccgccgtcagcccgctcctccgcggcatcgaggtcggcctcgcccatggctac 64 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct: 13115276 taccgcaccgccgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctac 13115335 Query: 65 ctcctcgtcggccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggacag 124 ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct: 13115336 ctcctcgtcgggcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccag 13115395 Query: 125 gccggcacactcggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgtac 184 |||||| | ||||||||| || |||||| ||||||||||||||||||||||||||||| Sbjct: 13115396 gccggcgccctcggcgccgcaggcctcgtcgccatcctcagcgtctgcctcaccatgtac 13115455 Query: 185 ggcgtcgcctccttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccgga 244 ||||||||||||||| |||||||||||||||||| |||||| ||| || |||||||| Sbjct: 13115456 ggcgtcgcctccttcggcgagggcgagccgtccacggcgccgacgctgacgctcaccggc 13115515 Query: 245 cgcaagaaggaggccgacaagctccagaccgccgaagggtggtcgcagttcaccggaggc 304 ||||||||||||||||||||||| ||||||||||| || ||| | |||||||||| ||| Sbjct: 13115516 cgcaagaaggaggccgacaagctgcagaccgccgacggctgggccaagttcaccggcggc 13115575 Query: 305 ttcttcttcggcggtgtatccggcgccgtctgggcatacttcctcctctacgtgctcgac 364 |||||||||||||| | ||||||| | ||||||| |||||||||||||||||||||||| Sbjct: 13115576 ttcttcttcggcggcatctccggcgtcctctgggcctacttcctcctctacgtgctcgac 13115635 Query: 365 ctcccatacttcttcaagtagat 387 ||||| ||||||||||||||||| Sbjct: 13115636 ctcccgtacttcttcaagtagat 13115658
>emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112_F01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 193499 Score = 482 bits (243), Expect = e-133 Identities = 348/383 (90%) Strand = Plus / Minus Query: 5 taccgcaccgccgtcagcccgctcctccgcggcatcgaggtcggcctcgcccatggctac 64 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct: 169741 taccgcaccgccgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctac 169682 Query: 65 ctcctcgtcggccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggacag 124 ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct: 169681 ctcctcgtcgggcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccag 169622 Query: 125 gccggcacactcggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgtac 184 |||||| | ||||||||| || |||||| ||||||||||||||||||||||||||||| Sbjct: 169621 gccggcgccctcggcgccgcaggcctcgtcgccatcctcagcgtctgcctcaccatgtac 169562 Query: 185 ggcgtcgcctccttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccgga 244 ||||||||||||||| |||||||||||||||||| |||||| ||| || |||||||| Sbjct: 169561 ggcgtcgcctccttcggcgagggcgagccgtccacggcgccgacgctgacgctcaccggc 169502 Query: 245 cgcaagaaggaggccgacaagctccagaccgccgaagggtggtcgcagttcaccggaggc 304 ||||||||||||||||||||||| ||||||||||| || ||| | |||||||||| ||| Sbjct: 169501 cgcaagaaggaggccgacaagctgcagaccgccgacggctgggccaagttcaccggcggc 169442 Query: 305 ttcttcttcggcggtgtatccggcgccgtctgggcatacttcctcctctacgtgctcgac 364 |||||||||||||| | ||||||| | ||||||| |||||||||||||||||||||||| Sbjct: 169441 ttcttcttcggcggcatctccggcgtcctctgggcctacttcctcctctacgtgctcgac 169382 Query: 365 ctcccatacttcttcaagtagat 387 ||||| ||||||||||||||||| Sbjct: 169381 ctcccgtacttcttcaagtagat 169359
>emb|AL731785.2|CNS08C89 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 178827 Score = 482 bits (243), Expect = e-133 Identities = 348/383 (90%) Strand = Plus / Plus Query: 5 taccgcaccgccgtcagcccgctcctccgcggcatcgaggtcggcctcgcccatggctac 64 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct: 150204 taccgcaccgccgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctac 150263 Query: 65 ctcctcgtcggccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggacag 124 ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct: 150264 ctcctcgtcgggcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccag 150323 Query: 125 gccggcacactcggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgtac 184 |||||| | ||||||||| || |||||| ||||||||||||||||||||||||||||| Sbjct: 150324 gccggcgccctcggcgccgcaggcctcgtcgccatcctcagcgtctgcctcaccatgtac 150383 Query: 185 ggcgtcgcctccttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccgga 244 ||||||||||||||| |||||||||||||||||| |||||| ||| || |||||||| Sbjct: 150384 ggcgtcgcctccttcggcgagggcgagccgtccacggcgccgacgctgacgctcaccggc 150443 Query: 245 cgcaagaaggaggccgacaagctccagaccgccgaagggtggtcgcagttcaccggaggc 304 ||||||||||||||||||||||| ||||||||||| || ||| | |||||||||| ||| Sbjct: 150444 cgcaagaaggaggccgacaagctgcagaccgccgacggctgggccaagttcaccggcggc 150503 Query: 305 ttcttcttcggcggtgtatccggcgccgtctgggcatacttcctcctctacgtgctcgac 364 |||||||||||||| | ||||||| | ||||||| |||||||||||||||||||||||| Sbjct: 150504 ttcttcttcggcggcatctccggcgtcctctgggcctacttcctcctctacgtgctcgac 150563 Query: 365 ctcccatacttcttcaagtagat 387 ||||| ||||||||||||||||| Sbjct: 150564 ctcccgtacttcttcaagtagat 150586
>dbj|AK105154.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-F07, full insert sequence Length = 964 Score = 474 bits (239), Expect = e-130 Identities = 347/383 (90%) Strand = Plus / Plus Query: 5 taccgcaccgccgtcagcccgctcctccgcggcatcgaggtcggcctcgcccatggctac 64 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct: 322 taccgcaccgccgtcagcccgctgctccgcggcatcgaggtcggcctcgcccacggctac 381 Query: 65 ctcctcgtcggccccttcgcgctcactggcccgctccgcaacacgcccgtgcacggacag 124 ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||| Sbjct: 382 ctcctcgtcgggcccttcgcgctcaccggcccgctccgcaacacgccggtgcacggccag 441 Query: 125 gccggcacactcggcgccatcggactcgtctccatcctcagcgtctgcctcaccatgtac 184 |||||| | ||||||||| || |||||| ||||||||||||||||||||||||||||| Sbjct: 442 gccggcgccctcggcgccgcaggcctcgtcgccatcctcagcgtctgcctcaccatgtac 501 Query: 185 ggcgtcgcctccttcaacgagggcgagccgtccaccgcgccggtgctcaccctcaccgga 244 ||||||||||||||| |||||||||||||||||| |||||| ||| || |||||||| Sbjct: 502 ggcgtcgcctccttcggcgagggcgagccgtccacggcgccgacgctgacgctcaccggc 561 Query: 245 cgcaagaaggaggccgacaagctccagaccgccgaagggtggtcgcagttcaccggaggc 304 ||||||||||||||||||||||| ||||||||||| || ||| | |||||||||| ||| Sbjct: 562 cgcaagaaggaggccgacaagctgcagaccgccgacggctgggccaagttcaccggcggc 621 Query: 305 ttcttcttcggcggtgtatccggcgccgtctgggcatacttcctcctctacgtgctcgac 364 |||||||||||||| | ||||||| | ||||||| ||||||||||||||||||||||| Sbjct: 622 ttcttcttcggcggcatctccggcgtcctctgggcctacttcctcctctacgtgctcgat 681 Query: 365 ctcccatacttcttcaagtagat 387 ||||| ||||||||||||||||| Sbjct: 682 ctcccgtacttcttcaagtagat 704
>gb|AY103985.1| Zea mays PCO103239 mRNA sequence Length = 1657 Score = 408 bits (206), Expect = e-111 Identities = 341/386 (88%) Strand = Plus / Plus Query: 1 ggcctaccgcaccgccgtcagcccgctcctccgcggcatcgaggtcggcctcgcccatgg 60 |||||||||||||||||| |||||||| || || ||| |||||||||||||||| || || Sbjct: 1114 ggcctaccgcaccgccgtgagcccgctgctgcggggcgtcgaggtcggcctcgcgcacgg 1173 Query: 61 ctacctcctcgtcggccccttcgcgctcactggcccgctccgcaacacgcccgtgcacgg 120 |||||||||||| || |||||||||||||| ||||||||||||| ||||||||||||||| Sbjct: 1174 ctacctcctcgtggggcccttcgcgctcacgggcccgctccgcagcacgcccgtgcacgg 1233 Query: 121 acaggccggcacactcggcgccatcggactcgtctccatcctcagcgtctgcctcaccat 180 ||||||||| | ||||||||| ||| |||||| ||||||||||||||||||||||||| Sbjct: 1234 ccaggccggcgcgctcggcgccgccggcctcgtcgccatcctcagcgtctgcctcaccat 1293 Query: 181 gtacggcgtcgcctccttcaacgagggcgagccgtccaccgcgccggtgctcaccctcac 240 ||||||||||||||||||||||||||| || |||||||| ||||| |||||| ||||| Sbjct: 1294 gtacggcgtcgcctccttcaacgagggggacccgtccacggcgcccacgctcacgctcac 1353 Query: 241 cggacgcaagaaggaggccgacaagctccagaccgccgaagggtggtcgcagttcaccgg 300 ||| | |||||||||||||||||||| ||||||||||| || ||| | |||||||||| Sbjct: 1354 cggcaggaagaaggaggccgacaagctgcagaccgccgacggctgggccaagttcaccgg 1413 Query: 301 aggcttcttcttcggcggtgtatccggcgccgtctgggcatacttcctcctctacgtgct 360 || |||||||||||||| | ||||||| ||||||| ||||| |||||||||||||| Sbjct: 1414 ggggttcttcttcggcggcatctccggcgtgctctgggcctactttctcctctacgtgct 1473 Query: 361 cgacctcccatacttcttcaagtaga 386 ||||||||| |||||||||||||||| Sbjct: 1474 cgacctcccctacttcttcaagtaga 1499
>emb|X57903.1|OS08RG10F O.sativa random single-copy DNA fragment 08RG108F Length = 162 Score = 77.8 bits (39), Expect = 3e-11 Identities = 52/55 (94%), Gaps = 1/55 (1%) Strand = Plus / Plus Query: 333 tctgggcatacttcctcctctacgt-gctcgacctcccatacttcttcaagtaga 386 ||||||| ||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct: 55 tctgggcctacttcctcctctacgtagctcgacctcccgtacttcttcaagtaga 109
>dbj|D50456.1|CUSPSAL Cucumis sativus mRNA for PsaL, complete cds Length = 812 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 333 tctgggcatacttcctcctctacgtgctcgacctcccatacttcttcaagtagatt 388 |||||||||||||||||||||| || | |||||||| |||| | ||||||||||| Sbjct: 682 tctgggcatacttcctcctctatgtcttggacctcccttactacgtcaagtagatt 737
>dbj|D83007.1|CUSPSALG Cucumis sativus seedling cotyledon psaL mRNA for subunit of photosystem I, complete cds Length = 811 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 333 tctgggcatacttcctcctctacgtgctcgacctcccatacttcttcaagtagatt 388 |||||||||||||||||||||| || | |||||||| |||| | ||||||||||| Sbjct: 619 tctgggcatacttcctcctctatgtcttggacctcccttactacgtcaagtagatt 674
>dbj|AB219568.1| Fragaria x ananassa FrPSI mRNA for photosystem I protein, partial cds Length = 404 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 239 accggacgcaagaaggaggccgacaagctccagaccgccgaa 280 ||||| |||||||||||| ||||| ||||||| ||||||||| Sbjct: 142 accggccgcaagaaggagcccgaccagctccaaaccgccgaa 183
>emb|X64445.1|SOPSAL S.oleracea psaL mRNA for subunit XI of photosystem I reaction center Length = 834 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 291 agttcaccggaggcttcttcttcggcggtgtatccgg 327 ||||||||||||| ||||||||||| ||||| ||||| Sbjct: 640 agttcaccggagggttcttcttcggtggtgtttccgg 676
>gb|BT018644.1| Zea mays clone EL01N0505B01.d mRNA sequence Length = 1630 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 cgaggtcggcctcgcccatgg 60 ||||||||||||||||||||| Sbjct: 997 cgaggtcggcctcgcccatgg 977
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 cgcgctcactggcccgctccg 102 ||||||||||||||||||||| Sbjct: 4178355 cgcgctcactggcccgctccg 4178375 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 catcgaggtcggcctcgccc 56 |||||||||||||||||||| Sbjct: 8946139 catcgaggtcggcctcgccc 8946158
>dbj|AB039379.1| Streptomyces aureofaciens tcsD, tcsE, tcsF, tcsG, genes for beta-ketoacyl synthase, beta-ketoacyl synthase2, acyl carrier protein, asparagine synthase homolog, complete cds Length = 5188 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 gcgagccgtccaccgcgccgg 227 ||||||||||||||||||||| Sbjct: 2293 gcgagccgtccaccgcgccgg 2273
>ref|NM_001037124.1| Danio rerio zgc:123341 (zgc:123341), mRNA Length = 1067 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 catcctcagcgtctgcctca 176 |||||||||||||||||||| Sbjct: 316 catcctcagcgtctgcctca 297
>ref|NM_117349.2| Arabidopsis thaliana unknown protein AT4G12800 mRNA, complete cds Length = 984 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 5 taccgcaccgccgtcagcccgctcctccgcgg 36 ||||| |||||||||| ||| ||||||||||| Sbjct: 427 taccgtaccgccgtcaaccctctcctccgcgg 458
>gb|AC150702.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1356E08, complete sequence Length = 136853 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 ctcctcgtcggccccttcgc 84 |||||||||||||||||||| Sbjct: 96245 ctcctcgtcggccccttcgc 96226
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ccgcggcatcgaggtcggcc 50 |||||||||||||||||||| Sbjct: 2408060 ccgcggcatcgaggtcggcc 2408079 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 gcatcgaggtcggcctcgcc 55 |||||||||||||||||||| Sbjct: 577051 gcatcgaggtcggcctcgcc 577032
>gb|AC109645.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0410D09, complete sequence Length = 43883 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 ctcctcgtcggccccttcgc 84 |||||||||||||||||||| Sbjct: 5291 ctcctcgtcggccccttcgc 5272
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 24 cgctcctccgcggcatcgaggtcggcct 51 |||||||| ||||| ||||||||||||| Sbjct: 6590 cgctcctcagcggcgtcgaggtcggcct 6617
>gb|AC117192.3| Mus musculus BAC clone RP23-77A18 from 2, complete sequence Length = 161199 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 catacttcttcaagtagatt 388 |||||||||||||||||||| Sbjct: 143184 catacttcttcaagtagatt 143165
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ccgcggcatcgaggtcggcc 50 |||||||||||||||||||| Sbjct: 3193803 ccgcggcatcgaggtcggcc 3193784
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 257 gccgacaagctccagaccgccgaa 280 ||||||||||||||| |||||||| Sbjct: 1174948 gccgacaagctccagtccgccgaa 1174925
>emb|AL023553.5|HS347H13 Human DNA sequence from clone RP3-347H13 on chromosome 22 Contains the 3' end of the ACO2 gene for mitochondrial aconitase 2, the gene for a novel protein similar to yeast DNA-directed RNA Polymerase III 25 kD Polypeptide, the gene for the human ortholog of rat Pippin, the PMM1 gene for phosphomannomutase 1 (PMMH-22, yeast SEC53 ortholog), and two novel genes. Contains ESTs, STSs, GSSs and two putative CpG islands, complete sequence Length = 107818 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 ctgggcatacttcctcctct 353 |||||||||||||||||||| Sbjct: 65003 ctgggcatacttcctcctct 64984
>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16 Length = 346287 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 aggtcggcctcgcccatggc 61 |||||||||||||||||||| Sbjct: 217148 aggtcggcctcgcccatggc 217167
>emb|BX640422.1| Bordetella pertussis strain Tohama I, complete genome; segment 12/12 Length = 257701 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 aggtcggcctcgcccatggc 61 |||||||||||||||||||| Sbjct: 215196 aggtcggcctcgcccatggc 215215
>emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genome; segment 10/16 Length = 349981 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ccgcggcatcgaggtcggcc 50 |||||||||||||||||||| Sbjct: 173448 ccgcggcatcgaggtcggcc 173429
>emb|AL161535.2|ATCHRIV35 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 35 Length = 199280 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 5 taccgcaccgccgtcagcccgctcctccgcgg 36 ||||| |||||||||| ||| ||||||||||| Sbjct: 3134 taccgtaccgccgtcaaccctctcctccgcgg 3165
>emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34 Length = 196107 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 5 taccgcaccgccgtcagcccgctcctccgcgg 36 ||||| |||||||||| ||| ||||||||||| Sbjct: 194241 taccgtaccgccgtcaaccctctcctccgcgg 194272
>emb|AL049640.1|ATT20K18 Arabidopsis thaliana DNA chromosome 4, BAC clone T20K18 (ESSA project) Length = 79375 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 5 taccgcaccgccgtcagcccgctcctccgcgg 36 ||||| |||||||||| ||| ||||||||||| Sbjct: 52629 taccgtaccgccgtcaaccctctcctccgcgg 52660
>emb|AJ245867.1|ATH245867 Arabidopsis thaliana mRNA for photosystem I subunit XI precursor Length = 928 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 5 taccgcaccgccgtcagcccgctcctccgcgg 36 ||||| |||||||||| ||| ||||||||||| Sbjct: 395 taccgtaccgccgtcaaccctctcctccgcgg 426
>gb|AY097427.1| Arabidopsis thaliana AT4g12800/T20K18_150 mRNA, complete cds Length = 660 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 5 taccgcaccgccgtcagcccgctcctccgcgg 36 ||||| |||||||||| ||| ||||||||||| Sbjct: 280 taccgtaccgccgtcaaccctctcctccgcgg 311
>gb|AF446350.1|AF446350 Arabidopsis thaliana AT4g12800/T20K18_150 mRNA, complete cds Length = 821 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 5 taccgcaccgccgtcagcccgctcctccgcgg 36 ||||| |||||||||| ||| ||||||||||| Sbjct: 316 taccgtaccgccgtcaaccctctcctccgcgg 347
>gb|AY059949.1| Arabidopsis thaliana probable photosystem I chain XI precursor (At4g12800; T20K18.150) mRNA, complete cds Length = 853 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 5 taccgcaccgccgtcagcccgctcctccgcgg 36 ||||| |||||||||| ||| ||||||||||| Sbjct: 322 taccgtaccgccgtcaaccctctcctccgcgg 353
>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome Length = 1010023 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 acttcttcaagtagattaat 391 |||||||||||||||||||| Sbjct: 781165 acttcttcaagtagattaat 781146
>gb|AF428447.1|AF428447 Arabidopsis thaliana AT4g12800/T20K18_150 mRNA, complete cds Length = 842 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 5 taccgcaccgccgtcagcccgctcctccgcgg 36 ||||| |||||||||| ||| ||||||||||| Sbjct: 316 taccgtaccgccgtcaaccctctcctccgcgg 347
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ccgcggcatcgaggtcggcc 50 |||||||||||||||||||| Sbjct: 2979654 ccgcggcatcgaggtcggcc 2979673
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 ctcctcgtcggccccttcgc 84 |||||||||||||||||||| Sbjct: 18238032 ctcctcgtcggccccttcgc 18238013
>emb|BX826431.1|CNS0A4G8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB26ZA06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 823 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 5 taccgcaccgccgtcagcccgctcctccgcgg 36 ||||| |||||||||| ||| ||||||||||| Sbjct: 302 taccgtaccgccgtcaaccctctcctccgcgg 333
>emb|BX826834.1|CNS0A38Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB68ZB09 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 762 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 5 taccgcaccgccgtcagcccgctcctccgcgg 36 ||||| |||||||||| ||| ||||||||||| Sbjct: 303 taccgtaccgccgtcaaccctctcctccgcgg 334
>emb|BX826723.1|CNS0A3CA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB57ZH08 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 816 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 5 taccgcaccgccgtcagcccgctcctccgcgg 36 ||||| |||||||||| ||| ||||||||||| Sbjct: 297 taccgtaccgccgtcaaccctctcctccgcgg 328
>emb|BX826537.1|CNS0A35T Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB36ZF12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 797 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 5 taccgcaccgccgtcagcccgctcctccgcgg 36 ||||| |||||||||| ||| ||||||||||| Sbjct: 278 taccgtaccgccgtcaaccctctcctccgcgg 309
>gb|AY826885.1| Heterocapsa triquetra clone HTPSAL1 chloroplast photosystem I subunit XI mRNA, complete cds; nuclear gene for chloroplast product Length = 1197 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 ggcccgctccgcaacacgcc 111 |||||||||||||||||||| Sbjct: 892 ggcccgctccgcaacacgcc 911
>gb|AY087339.1| Arabidopsis thaliana clone 34400 mRNA, complete sequence Length = 944 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 5 taccgcaccgccgtcagcccgctcctccgcgg 36 ||||| |||||||||| ||| ||||||||||| Sbjct: 428 taccgtaccgccgtcaaccctctcctccgcgg 459
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 tcgaggtcggcctcgcccat 58 |||||||||||||||||||| Sbjct: 4350722 tcgaggtcggcctcgcccat 4350703
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ccgcggcatcgaggtcggcc 50 |||||||||||||||||||| Sbjct: 5407694 ccgcggcatcgaggtcggcc 5407675
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 ctcctcgtcggccccttcgc 84 |||||||||||||||||||| Sbjct: 18396929 ctcctcgtcggccccttcgc 18396910
>gb|BC107646.1| Danio rerio zgc:123341, mRNA (cDNA clone MGC:123341 IMAGE:7413031), complete cds Length = 1067 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 catcctcagcgtctgcctca 176 |||||||||||||||||||| Sbjct: 316 catcctcagcgtctgcctca 297
>gb|AC022002.5| Homo sapiens chromosome 3 clone RP11-198P17 map 3p, complete sequence Length = 189097 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 taggtggcatgcatgtacga 410 |||||||||||||||||||| Sbjct: 81369 taggtggcatgcatgtacga 81350
>emb|AL928659.16| Mouse DNA sequence from clone RP23-271B13 on chromosome 2, complete sequence Length = 209560 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 catacttcttcaagtagatt 388 |||||||||||||||||||| Sbjct: 121780 catacttcttcaagtagatt 121761 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,655,121 Number of Sequences: 3902068 Number of extensions: 2655121 Number of successful extensions: 45545 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44502 Number of HSP's gapped (non-prelim): 1042 length of query: 438 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 416 effective length of database: 17,147,199,772 effective search space: 7133235105152 effective search space used: 7133235105152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)