| Clone Name | baal23g20 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK065976.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047L05, full insert sequence Length = 1717 Score = 482 bits (243), Expect = e-133 Identities = 363/403 (90%) Strand = Plus / Plus Query: 29 aaagagaatctctccaagttatgggatattctagctgtatacgcgtggatcgacaaagaa 88 ||||| ||||| || ||||||||||||||||| |||||||| || ||||||||||||||| Sbjct: 786 aaagaaaatctttcgaagttatgggatattcttgctgtatatgcttggatcgacaaagaa 845 Query: 89 gttggttactgccaaggaatgagtgatttatgctcaccgatgatagtgcttctcagtgac 148 |||| || || |||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct: 846 attggctattgtcaaggaatgagtgatttatgctcaccgatgatagtgctgctcaacgac 905 Query: 149 gaagcagacgcgttttggtgctttgagaggctcatgcgtagactgatgcacacagcaatc 208 |||||||| || ||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct: 906 gaagcagatgcattttggtgctttgagagattaatgcgtagactgatgcacacagcaatc 965 Query: 209 tgttggggttgagaaccagcttcagcaccttgcctctatcattcaggtgttggaccgaaa 268 ||||||||| ||||||||||||||||||||||| ||||||||||| ||| | |||| ||| Sbjct: 966 tgttggggtggagaaccagcttcagcaccttgcgtctatcattcaagtgcttgacccaaa 1025 Query: 269 gctacatgaccacctagaaacacttggcgggggcgactatctctttgcattccgtatgtt 328 ||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||| Sbjct: 1026 attacatgaccacctagaaacacttggtgggggtgattatctctttgcattccgcatgtt 1085 Query: 329 catggtattgtttcggcgtgagttgtcattcggggactccttgtacctttgggagatgat 388 ||||||||||||||||||||| || ||||| |||||||| | ||||||||||||||||| Sbjct: 1086 catggtattgtttcggcgtgaattatcatttggggactcactatacctttgggagatgat 1145 Query: 389 gtgggccctagaatatgatcctgacatgttctcgacgtatgaa 431 |||||| |||||||||||||||||||| ||||| || |||||| Sbjct: 1146 gtgggctctagaatatgatcctgacatcttctccacatatgaa 1188 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Plus Query: 549 gatggccctgtccctatttctgttttcctggttgctagtgtgttgaaagagaacagt 605 ||||| ||||| || |||||||||||||||||||||||||| |||| ||||||||| Sbjct: 1303 gatggtcctgttccgatttctgttttcctggttgctagtgttctgaaggagaacagt 1359 Score = 44.1 bits (22), Expect = 0.54 Identities = 43/50 (86%) Strand = Plus / Plus Query: 482 agtaaaatcaacccgtcagtttggcaagtacgagagggcgaatatgaaga 531 ||||||||||| || || ||||||||||||||||| | |||||||||| Sbjct: 1233 agtaaaatcaattcgccaatttggcaagtacgagagagacaatatgaaga 1282
>gb|AY109145.1| Zea mays PCO088682 mRNA sequence Length = 545 Score = 238 bits (120), Expect = 2e-59 Identities = 211/242 (87%) Strand = Plus / Plus Query: 193 gatgcacacagcaatctgttggggttgagaaccagcttcagcaccttgcctctatcattc 252 |||||||||| || ||||||||||| || |||||||||||||| ||||| |||||||||| Sbjct: 189 gatgcacacaacagtctgttggggtggaaaaccagcttcagcatcttgcttctatcattc 248 Query: 253 aggtgttggaccgaaagctacatgaccacctagaaacacttggcgggggcgactatctct 312 ||||| | || | |||| |||||| ||||||||||| |||||||||||| |||||||||| Sbjct: 249 aggtgcttgatccaaagttacatggccacctagaaagacttggcgggggtgactatctct 308 Query: 313 ttgcattccgtatgttcatggtattgtttcggcgtgagttgtcattcggggactccttgt 372 | |||||||| ||||||||||||||||| |||| || | ||||| ||||||||| ||| Sbjct: 309 tcgcattccgcatgttcatggtattgttccggctagaactatcatttggggactccntgt 368 Query: 373 acctttgggagatgatgtgggccctagaatatgatcctgacatgttctcgacgtatgaag 432 |||||||||||||||||||||| || ||||||||||||| ||| | ||| || ||||||| Sbjct: 369 acctttgggagatgatgtgggctctcgaatatgatcctggcatttgctccacntatgaag 428 Query: 433 ag 434 || Sbjct: 429 ag 430 Score = 139 bits (70), Expect = 1e-29 Identities = 130/150 (86%) Strand = Plus / Plus Query: 44 aagttatgggatattctagctgtatacgcgtggatcgacaaagaagttggttactgccaa 103 ||||| ||||||||||| ||||| || || ||||||||||||||||||||||| || ||| Sbjct: 26 aagttgtgggatattcttgctgtctatgcatggatcgacaaagaagttggttattgtcaa 85 Query: 104 ggaatgagtgatttatgctcaccgatgatagtgcttctcagtgacgaagcagacgcgttt 163 ||||||||||||||||| ||||| ||||||||||| ||| | |||||||| || ||| Sbjct: 86 ggaatgagtgatttatgttcacccatgatagtgctactccacaatgaagcagatgcattt 145 Query: 164 tggtgctttgagaggctcatgcgtagactg 193 |||||||||||||| | |||||||||||| Sbjct: 146 tggtgctttgagagattgatgcgtagactg 175 Score = 58.0 bits (29), Expect = 4e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 495 cgtcagtttggcaagtacgagagggcgaatatgaaga 531 ||||||||||| ||||||||||||| ||||||||||| Sbjct: 482 cgtcagtttggtaagtacgagagggagaatatgaaga 518
>dbj|AK121393.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023129N03, full insert sequence Length = 2102 Score = 153 bits (77), Expect = 8e-34 Identities = 164/193 (84%) Strand = Plus / Plus Query: 228 cttcagcaccttgcctctatcattcaggtgttggaccgaaagctacatgaccacctagaa 287 |||||| ||||||| ||||| ||||||||| | || | |||||||||||||||||||||| Sbjct: 1160 cttcagtaccttgcatctattattcaggtgcttgatccaaagctacatgaccacctagaa 1219 Query: 288 acacttggcgggggcgactatctctttgcattccgtatgttcatggtattgtttcggcgt 347 | |||||| || || || ||||| |||||||| |||||||||||||| | ||||| || Sbjct: 1220 atacttggtggaggtgattatctttttgcatttcgtatgttcatggtgctatttcgacgc 1279 Query: 348 gagttgtcattcggggactccttgtacctttgggagatgatgtgggccctagaatatgat 407 || ||||||| ||||||||| |||| || ||||||||||||||||| || ||||||||| Sbjct: 1280 gaagtgtcatttggggactccctgtatctctgggagatgatgtgggctctggaatatgat 1339 Query: 408 cctgacatgttct 420 || ||||| |||| Sbjct: 1340 cccgacatcttct 1352 Score = 135 bits (68), Expect = 2e-28 Identities = 128/148 (86%) Strand = Plus / Plus Query: 29 aaagagaatctctccaagttatgggatattctagctgtatacgcgtggatcgacaaagaa 88 ||||| ||||| |||||||| ||||||||||||||||| || || ||||| || ||||| Sbjct: 947 aaagaaaatctttccaagttgtgggatattctagctgtgtatgcttggattgataaagat 1006 Query: 89 gttggttactgccaaggaatgagtgatttatgctcaccgatgatagtgcttctcagtgac 148 ||||||||||| ||||||||||| ||||||||||| || ||||| ||||| |||| || Sbjct: 1007 gttggttactgtcaaggaatgagcgatttatgctcgccaatgatcgtgctactcaaggat 1066 Query: 149 gaagcagacgcgttttggtgctttgaga 176 |||||||| || |||||||||||||||| Sbjct: 1067 gaagcagatgccttttggtgctttgaga 1094
>gb|AY109163.1| Zea mays PCO088683 mRNA sequence Length = 722 Score = 143 bits (72), Expect = 8e-31 Identities = 117/132 (88%) Strand = Plus / Plus Query: 303 gactatctctttgcattccgtatgttcatggtattgtttcggcgtgagttgtcattcggg 362 ||||||||||| |||||||| ||||||||||||||||| ||||| || | ||||| ||| Sbjct: 2 gactatctcttcgcattccgcatgttcatggtattgttccggcgagaactatcatttggg 61 Query: 363 gactccttgtacctttgggagatgatgtgggccctagaatatgatcctgacatgttctcg 422 |||||||||||||||||||||||||||||||| || ||||||||||||| ||| | ||| Sbjct: 62 gactccttgtacctttgggagatgatgtgggctctcgaatatgatcctggcatttgctcc 121 Query: 423 acgtatgaagag 434 || ||||||||| Sbjct: 122 acttatgaagag 133 Score = 85.7 bits (43), Expect = 2e-13 Identities = 103/123 (83%) Strand = Plus / Plus Query: 483 gtaaaatcaacccgtcagtttggcaagtacgagagggcgaatatgaagagcgctactaac 542 |||||||||| ||||||||||| ||||||||||||| ||||||||||| | ||| Sbjct: 173 gtaaaatcaatacgtcagtttggtaagtacgagagggagaatatgaagaagagggcaaac 232 Query: 543 tgtgttgatggccctgtccctatttctgttttcctggttgctagtgtgttgaaagagaac 602 || |||||| |||||||||||||| || ||||||||||||||||| | ||||||||| Sbjct: 233 gatggtgatggacctgtccctatttcggtcttcctggttgctagtgtcctaaaagagaac 292 Query: 603 agt 605 ||| Sbjct: 293 agt 295
>gb|AY110881.1| Zea mays CL4521_1 mRNA sequence Length = 1181 Score = 127 bits (64), Expect = 5e-26 Identities = 164/199 (82%) Strand = Plus / Plus Query: 222 aaccagcttcagcaccttgcctctatcattcaggtgttggaccgaaagctacatgaccac 281 ||||| ||||| || ||||| ||||| |||||||| | |||| |||||||||||||||| Sbjct: 176 aaccaacttcaacatcttgcatctattattcaggttcttgacccaaagctacatgaccac 235 Query: 282 ctagaaacacttggcgggggcgactatctctttgcattccgtatgttcatggtattgttt 341 |||||||| |||||||| || ||||| | || ||||| ||||||||||| | ||| Sbjct: 236 ctagaaactcttggcggaggtgactaccnnnnngcgttccgaatgttcatggtgctattt 295 Query: 342 cggcgtgagttgtcattcggggactccttgtacctttgggagatgatgtgggccctagaa 401 ||||||| | ||||| || |||||||| ||||| ||||||||||||||||| |||||| Sbjct: 296 aggcgtgaagtatcatttggagactccttatacctctgggagatgatgtgggctctagaa 355 Query: 402 tatgatcctgacatgttct 420 || || |||||||| |||| Sbjct: 356 tacgaccctgacattttct 374 Score = 99.6 bits (50), Expect = 1e-17 Identities = 90/102 (88%), Gaps = 1/102 (0%) Strand = Plus / Plus Query: 75 ggatcgacaaagaagttggttactgccaaggaatgagtgatttatgctcaccgatgatag 134 |||| |||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct: 16 ggattgacaaagatgttggtt-ctgccaaggaatgagtgatttatgctcaccaatgatag 74 Query: 135 tgcttctcagtgacgaagcagacgcgttttggtgctttgaga 176 | || || | || |||||||| || |||||||||||||||| Sbjct: 75 ttctactaaaggatgaagcagatgccttttggtgctttgaga 116
>gb|AC136148.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0029K08, complete sequence Length = 136687 Score = 121 bits (61), Expect = 3e-24 Identities = 85/93 (91%) Strand = Plus / Minus Query: 193 gatgcacacagcaatctgttggggttgagaaccagcttcagcaccttgcctctatcattc 252 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct: 72533 gatgcacacagcaatctgttggggtggagaaccagcttcagcaccttgcgtctatcattc 72474 Query: 253 aggtgttggaccgaaagctacatgaccacctag 285 | ||| | |||| ||| ||||||||||||||| Sbjct: 72473 aagtgcttgacccaaaattacatgaccacctag 72441 Score = 119 bits (60), Expect = 1e-23 Identities = 90/100 (90%) Strand = Plus / Minus Query: 284 agaaacacttggcgggggcgactatctctttgcattccgtatgttcatggtattgtttcg 343 |||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||| Sbjct: 72344 agaaacacttggtgggggtgattatctctttgcattccgcatgttcatggtattgtttcg 72285 Query: 344 gcgtgagttgtcattcggggactccttgtacctttgggag 383 |||||| || ||||| |||||||| | |||||||||||| Sbjct: 72284 gcgtgaattatcatttggggactcactatacctttgggag 72245 Score = 117 bits (59), Expect = 4e-23 Identities = 83/91 (91%) Strand = Plus / Minus Query: 103 aggaatgagtgatttatgctcaccgatgatagtgcttctcagtgacgaagcagacgcgtt 162 |||||||||||||||||||||||||||||||||||| |||| ||||||||||| || || Sbjct: 72712 aggaatgagtgatttatgctcaccgatgatagtgctgctcaacgacgaagcagatgcatt 72653 Query: 163 ttggtgctttgagaggctcatgcgtagactg 193 ||||||||||||||| | |||||||||||| Sbjct: 72652 ttggtgctttgagagattaatgcgtagactg 72622 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 29 aaagagaatctctccaagttatgggatattctagctgtatacgcgtggatcgacaaagaa 88 ||||| ||||| || ||||||||||||||||| |||||||| || ||||||||||||||| Sbjct: 72873 aaagaaaatctttcgaagttatgggatattcttgctgtatatgcttggatcgacaaagaa 72814 Query: 89 gttgg 93 |||| Sbjct: 72813 attgg 72809 Score = 67.9 bits (34), Expect = 4e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 382 agatgatgtgggccctagaatatgatcctgacatgttctcgacgtatgaa 431 ||||||||||||| |||||||||||||||||||| ||||| || |||||| Sbjct: 72057 agatgatgtgggctctagaatatgatcctgacatcttctccacatatgaa 72008 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 549 gatggccctgtccctatttctgttttcctggttgctagtgtgttgaaagagaacagt 605 ||||| ||||| || |||||||||||||||||||||||||| |||| ||||||||| Sbjct: 71893 gatggtcctgttccgatttctgttttcctggttgctagtgttctgaaggagaacagt 71837 Score = 44.1 bits (22), Expect = 0.54 Identities = 43/50 (86%) Strand = Plus / Minus Query: 482 agtaaaatcaacccgtcagtttggcaagtacgagagggcgaatatgaaga 531 ||||||||||| || || ||||||||||||||||| | |||||||||| Sbjct: 71963 agtaaaatcaattcgccaatttggcaagtacgagagagacaatatgaaga 71914
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 121 bits (61), Expect = 3e-24 Identities = 85/93 (91%) Strand = Plus / Minus Query: 193 gatgcacacagcaatctgttggggttgagaaccagcttcagcaccttgcctctatcattc 252 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct: 21414783 gatgcacacagcaatctgttggggtggagaaccagcttcagcaccttgcgtctatcattc 21414724 Query: 253 aggtgttggaccgaaagctacatgaccacctag 285 | ||| | |||| ||| ||||||||||||||| Sbjct: 21414723 aagtgcttgacccaaaattacatgaccacctag 21414691 Score = 119 bits (60), Expect = 1e-23 Identities = 90/100 (90%) Strand = Plus / Minus Query: 284 agaaacacttggcgggggcgactatctctttgcattccgtatgttcatggtattgtttcg 343 |||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||| Sbjct: 21414594 agaaacacttggtgggggtgattatctctttgcattccgcatgttcatggtattgtttcg 21414535 Query: 344 gcgtgagttgtcattcggggactccttgtacctttgggag 383 |||||| || ||||| |||||||| | |||||||||||| Sbjct: 21414534 gcgtgaattatcatttggggactcactatacctttgggag 21414495 Score = 117 bits (59), Expect = 4e-23 Identities = 83/91 (91%) Strand = Plus / Minus Query: 103 aggaatgagtgatttatgctcaccgatgatagtgcttctcagtgacgaagcagacgcgtt 162 |||||||||||||||||||||||||||||||||||| |||| ||||||||||| || || Sbjct: 21414962 aggaatgagtgatttatgctcaccgatgatagtgctgctcaacgacgaagcagatgcatt 21414903 Query: 163 ttggtgctttgagaggctcatgcgtagactg 193 ||||||||||||||| | |||||||||||| Sbjct: 21414902 ttggtgctttgagagattaatgcgtagactg 21414872 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 29 aaagagaatctctccaagttatgggatattctagctgtatacgcgtggatcgacaaagaa 88 ||||| ||||| || ||||||||||||||||| |||||||| || ||||||||||||||| Sbjct: 21415123 aaagaaaatctttcgaagttatgggatattcttgctgtatatgcttggatcgacaaagaa 21415064 Query: 89 gttgg 93 |||| Sbjct: 21415063 attgg 21415059 Score = 67.9 bits (34), Expect = 4e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 382 agatgatgtgggccctagaatatgatcctgacatgttctcgacgtatgaa 431 ||||||||||||| |||||||||||||||||||| ||||| || |||||| Sbjct: 21414307 agatgatgtgggctctagaatatgatcctgacatcttctccacatatgaa 21414258 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 549 gatggccctgtccctatttctgttttcctggttgctagtgtgttgaaagagaacagt 605 ||||| ||||| || |||||||||||||||||||||||||| |||| ||||||||| Sbjct: 21414143 gatggtcctgttccgatttctgttttcctggttgctagtgttctgaaggagaacagt 21414087 Score = 44.1 bits (22), Expect = 0.54 Identities = 43/50 (86%) Strand = Plus / Minus Query: 482 agtaaaatcaacccgtcagtttggcaagtacgagagggcgaatatgaaga 531 ||||||||||| || || ||||||||||||||||| | |||||||||| Sbjct: 21414213 agtaaaatcaattcgccaatttggcaagtacgagagagacaatatgaaga 21414164
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 121 bits (61), Expect = 3e-24 Identities = 85/93 (91%) Strand = Plus / Minus Query: 193 gatgcacacagcaatctgttggggttgagaaccagcttcagcaccttgcctctatcattc 252 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct: 21724982 gatgcacacagcaatctgttggggtggagaaccagcttcagcaccttgcgtctatcattc 21724923 Query: 253 aggtgttggaccgaaagctacatgaccacctag 285 | ||| | |||| ||| ||||||||||||||| Sbjct: 21724922 aagtgcttgacccaaaattacatgaccacctag 21724890 Score = 119 bits (60), Expect = 1e-23 Identities = 90/100 (90%) Strand = Plus / Minus Query: 284 agaaacacttggcgggggcgactatctctttgcattccgtatgttcatggtattgtttcg 343 |||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||| Sbjct: 21724793 agaaacacttggtgggggtgattatctctttgcattccgcatgttcatggtattgtttcg 21724734 Query: 344 gcgtgagttgtcattcggggactccttgtacctttgggag 383 |||||| || ||||| |||||||| | |||||||||||| Sbjct: 21724733 gcgtgaattatcatttggggactcactatacctttgggag 21724694 Score = 117 bits (59), Expect = 4e-23 Identities = 83/91 (91%) Strand = Plus / Minus Query: 103 aggaatgagtgatttatgctcaccgatgatagtgcttctcagtgacgaagcagacgcgtt 162 |||||||||||||||||||||||||||||||||||| |||| ||||||||||| || || Sbjct: 21725161 aggaatgagtgatttatgctcaccgatgatagtgctgctcaacgacgaagcagatgcatt 21725102 Query: 163 ttggtgctttgagaggctcatgcgtagactg 193 ||||||||||||||| | |||||||||||| Sbjct: 21725101 ttggtgctttgagagattaatgcgtagactg 21725071 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 29 aaagagaatctctccaagttatgggatattctagctgtatacgcgtggatcgacaaagaa 88 ||||| ||||| || ||||||||||||||||| |||||||| || ||||||||||||||| Sbjct: 21725322 aaagaaaatctttcgaagttatgggatattcttgctgtatatgcttggatcgacaaagaa 21725263 Query: 89 gttgg 93 |||| Sbjct: 21725262 attgg 21725258 Score = 67.9 bits (34), Expect = 4e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 382 agatgatgtgggccctagaatatgatcctgacatgttctcgacgtatgaa 431 ||||||||||||| |||||||||||||||||||| ||||| || |||||| Sbjct: 21724506 agatgatgtgggctctagaatatgatcctgacatcttctccacatatgaa 21724457 Score = 65.9 bits (33), Expect = 1e-07 Identities = 51/57 (89%) Strand = Plus / Minus Query: 549 gatggccctgtccctatttctgttttcctggttgctagtgtgttgaaagagaacagt 605 ||||| ||||| || |||||||||||||||||||||||||| |||| ||||||||| Sbjct: 21724342 gatggtcctgttccgatttctgttttcctggttgctagtgttctgaaggagaacagt 21724286 Score = 44.1 bits (22), Expect = 0.54 Identities = 43/50 (86%) Strand = Plus / Minus Query: 482 agtaaaatcaacccgtcagtttggcaagtacgagagggcgaatatgaaga 531 ||||||||||| || || ||||||||||||||||| | |||||||||| Sbjct: 21724412 agtaaaatcaattcgccaatttggcaagtacgagagagacaatatgaaga 21724363
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 73.8 bits (37), Expect = 6e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 29 aaagagaatctctccaagttatgggatattctagctgtatacgcgtggatcgacaaagaa 88 ||||| ||||| |||||||| ||||||||||||||||| || || ||||| || ||||| Sbjct: 20362623 aaagaaaatctttccaagttgtgggatattctagctgtgtatgcttggattgataaagat 20362682 Query: 89 gttggttactgccaagg 105 ||||||||||| ||||| Sbjct: 20362683 gttggttactgtcaagg 20362699 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 103 aggaatgagtgatttatgctcaccgatgatagtgcttctcagtgacgaagcagacgcgtt 162 ||||||||| ||||||||||| || ||||| ||||| |||| || |||||||| || || Sbjct: 20362777 aggaatgagcgatttatgctcgccaatgatcgtgctactcaaggatgaagcagatgcctt 20362836 Query: 163 ttggtgctttgaga 176 |||||||||||||| Sbjct: 20362837 ttggtgctttgaga 20362850 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 228 cttcagcaccttgcctctatcattcaggtgttggaccgaaagctacatgaccacctag 285 |||||| ||||||| ||||| ||||||||| | || | |||||||||||||||||||| Sbjct: 20363064 cttcagtaccttgcatctattattcaggtgcttgatccaaagctacatgaccacctag 20363121 Score = 56.0 bits (28), Expect = 1e-04 Identities = 82/100 (82%) Strand = Plus / Plus Query: 284 agaaacacttggcgggggcgactatctctttgcattccgtatgttcatggtattgtttcg 343 ||||| |||||| || || || ||||| |||||||| |||||||||||||| | ||||| Sbjct: 20363209 agaaatacttggtggaggtgattatctttttgcatttcgtatgttcatggtgctatttcg 20363268 Query: 344 gcgtgagttgtcattcggggactccttgtacctttgggag 383 || || ||||||| ||||||||| |||| || |||||| Sbjct: 20363269 acgcgaagtgtcatttggggactccctgtatctctgggag 20363308 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Plus Query: 382 agatgatgtgggccctagaatatgatcctgacatgttct 420 ||||||||||||| || ||||||||||| ||||| |||| Sbjct: 20363715 agatgatgtgggctctggaatatgatcccgacatcttct 20363753
>dbj|AP005105.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0052O11 Length = 106467 Score = 73.8 bits (37), Expect = 6e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 29 aaagagaatctctccaagttatgggatattctagctgtatacgcgtggatcgacaaagaa 88 ||||| ||||| |||||||| ||||||||||||||||| || || ||||| || ||||| Sbjct: 105234 aaagaaaatctttccaagttgtgggatattctagctgtgtatgcttggattgataaagat 105293 Query: 89 gttggttactgccaagg 105 ||||||||||| ||||| Sbjct: 105294 gttggttactgtcaagg 105310 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 103 aggaatgagtgatttatgctcaccgatgatagtgcttctcagtgacgaagcagacgcgtt 162 ||||||||| ||||||||||| || ||||| ||||| |||| || |||||||| || || Sbjct: 105388 aggaatgagcgatttatgctcgccaatgatcgtgctactcaaggatgaagcagatgcctt 105447 Query: 163 ttggtgctttgaga 176 |||||||||||||| Sbjct: 105448 ttggtgctttgaga 105461 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 228 cttcagcaccttgcctctatcattcaggtgttggaccgaaagctacatgaccacctag 285 |||||| ||||||| ||||| ||||||||| | || | |||||||||||||||||||| Sbjct: 105675 cttcagtaccttgcatctattattcaggtgcttgatccaaagctacatgaccacctag 105732 Score = 56.0 bits (28), Expect = 1e-04 Identities = 82/100 (82%) Strand = Plus / Plus Query: 284 agaaacacttggcgggggcgactatctctttgcattccgtatgttcatggtattgtttcg 343 ||||| |||||| || || || ||||| |||||||| |||||||||||||| | ||||| Sbjct: 105820 agaaatacttggtggaggtgattatctttttgcatttcgtatgttcatggtgctatttcg 105879 Query: 344 gcgtgagttgtcattcggggactccttgtacctttgggag 383 || || ||||||| ||||||||| |||| || |||||| Sbjct: 105880 acgcgaagtgtcatttggggactccctgtatctctgggag 105919 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Plus Query: 382 agatgatgtgggccctagaatatgatcctgacatgttct 420 ||||||||||||| || ||||||||||| ||||| |||| Sbjct: 106326 agatgatgtgggctctggaatatgatcccgacatcttct 106364
>dbj|AP004573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0678G09 Length = 139220 Score = 73.8 bits (37), Expect = 6e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 29 aaagagaatctctccaagttatgggatattctagctgtatacgcgtggatcgacaaagaa 88 ||||| ||||| |||||||| ||||||||||||||||| || || ||||| || ||||| Sbjct: 71523 aaagaaaatctttccaagttgtgggatattctagctgtgtatgcttggattgataaagat 71582 Query: 89 gttggttactgccaagg 105 ||||||||||| ||||| Sbjct: 71583 gttggttactgtcaagg 71599 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 103 aggaatgagtgatttatgctcaccgatgatagtgcttctcagtgacgaagcagacgcgtt 162 ||||||||| ||||||||||| || ||||| ||||| |||| || |||||||| || || Sbjct: 71677 aggaatgagcgatttatgctcgccaatgatcgtgctactcaaggatgaagcagatgcctt 71736 Query: 163 ttggtgctttgaga 176 |||||||||||||| Sbjct: 71737 ttggtgctttgaga 71750 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 228 cttcagcaccttgcctctatcattcaggtgttggaccgaaagctacatgaccacctag 285 |||||| ||||||| ||||| ||||||||| | || | |||||||||||||||||||| Sbjct: 71964 cttcagtaccttgcatctattattcaggtgcttgatccaaagctacatgaccacctag 72021 Score = 56.0 bits (28), Expect = 1e-04 Identities = 82/100 (82%) Strand = Plus / Plus Query: 284 agaaacacttggcgggggcgactatctctttgcattccgtatgttcatggtattgtttcg 343 ||||| |||||| || || || ||||| |||||||| |||||||||||||| | ||||| Sbjct: 72109 agaaatacttggtggaggtgattatctttttgcatttcgtatgttcatggtgctatttcg 72168 Query: 344 gcgtgagttgtcattcggggactccttgtacctttgggag 383 || || ||||||| ||||||||| |||| || |||||| Sbjct: 72169 acgcgaagtgtcatttggggactccctgtatctctgggag 72208 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Plus Query: 382 agatgatgtgggccctagaatatgatcctgacatgttct 420 ||||||||||||| || ||||||||||| ||||| |||| Sbjct: 72615 agatgatgtgggctctggaatatgatcccgacatcttct 72653
>ref|NM_124859.3| Arabidopsis thaliana unknown protein AT5G54780 mRNA, complete cds Length = 1719 Score = 67.9 bits (34), Expect = 4e-08 Identities = 58/66 (87%) Strand = Plus / Plus Query: 50 tgggatattctagctgtatacgcgtggatcgacaaagaagttggttactgccaaggaatg 109 ||||| ||||||||| | ||||| ||||| ||||| || |||||||| |||||||||||| Sbjct: 763 tgggacattctagctctttacgcatggatagacaatgatgttggttattgccaaggaatg 822 Query: 110 agtgat 115 |||||| Sbjct: 823 agtgat 828 Score = 63.9 bits (32), Expect = 6e-07 Identities = 32/32 (100%) Strand = Plus / Plus Query: 363 gactccttgtacctttgggagatgatgtgggc 394 |||||||||||||||||||||||||||||||| Sbjct: 1090 gactccttgtacctttgggagatgatgtgggc 1121
>gb|AC146555.5| Medicago truncatula clone mth2-10p14, complete sequence Length = 127640 Score = 60.0 bits (30), Expect = 9e-06 Identities = 75/90 (83%) Strand = Plus / Minus Query: 103 aggaatgagtgatttatgctcaccgatgatagtgcttctcagtgacgaagcagacgcgtt 162 |||||||||||| ||||||| || |||||| | ||||| ||| ||||||||||| || Sbjct: 78196 aggaatgagtgacctatgctccccaatgataattcttcttgatgatgaagcagacgcatt 78137 Query: 163 ttggtgctttgagaggctcatgcgtagact 192 ||||||||||||| | || ||||| ||||| Sbjct: 78136 ttggtgctttgagcgtctgatgcgcagact 78107 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 561 cctatttctgttttcctggttgctagtgtgttgaaaga 598 ||||| ||||||||||| |||||| ||||||||||||| Sbjct: 76726 cctatatctgttttccttgttgctggtgtgttgaaaga 76689 Score = 48.1 bits (24), Expect = 0.034 Identities = 45/52 (86%) Strand = Plus / Minus Query: 382 agatgatgtgggccctagaatatgatcctgacatgttctcgacgtatgaaga 433 ||||||||||||| ||||| ||||||||| | |||||| || ||||||||| Sbjct: 76899 agatgatgtgggctctagagtatgatccttatttgttcttgatgtatgaaga 76848
>ref|NM_118844.2| Arabidopsis thaliana unknown protein AT4G27100 transcript variant AT4G27100.1 mRNA, complete cds Length = 1626 Score = 58.0 bits (29), Expect = 4e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 370 tgtacctttgggagatgatgtgggccctagaatatga 406 |||||||||||||||||||||||||||| || ||||| Sbjct: 1216 tgtacctttgggagatgatgtgggccctcgagtatga 1252 Score = 44.1 bits (22), Expect = 0.54 Identities = 55/66 (83%) Strand = Plus / Plus Query: 50 tgggatattctagctgtatacgcgtggatcgacaaagaagttggttactgccaaggaatg 109 ||||||||||| |||| ||||| ||||| ||||| || || || || || ||||||||| Sbjct: 882 tgggatattctgtctgtttacgcctggatagacaacgatgtcgggtattgtcaaggaatg 941 Query: 110 agtgat 115 |||||| Sbjct: 942 agtgat 947
>ref|NM_001036653.1| Arabidopsis thaliana unknown protein AT4G27100 transcript variant AT4G27100.2 mRNA, complete cds Length = 1881 Score = 58.0 bits (29), Expect = 4e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 370 tgtacctttgggagatgatgtgggccctagaatatga 406 |||||||||||||||||||||||||||| || ||||| Sbjct: 1216 tgtacctttgggagatgatgtgggccctcgagtatga 1252 Score = 44.1 bits (22), Expect = 0.54 Identities = 55/66 (83%) Strand = Plus / Plus Query: 50 tgggatattctagctgtatacgcgtggatcgacaaagaagttggttactgccaaggaatg 109 ||||||||||| |||| ||||| ||||| ||||| || || || || || ||||||||| Sbjct: 882 tgggatattctgtctgtttacgcctggatagacaacgatgtcgggtattgtcaaggaatg 941 Query: 110 agtgat 115 |||||| Sbjct: 942 agtgat 947
>gb|AY142502.1| Arabidopsis thaliana unknown protein (At4g27100) mRNA, complete cds Length = 1342 Score = 58.0 bits (29), Expect = 4e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 370 tgtacctttgggagatgatgtgggccctagaatatga 406 |||||||||||||||||||||||||||| || ||||| Sbjct: 932 tgtacctttgggagatgatgtgggccctcgagtatga 968 Score = 44.1 bits (22), Expect = 0.54 Identities = 55/66 (83%) Strand = Plus / Plus Query: 50 tgggatattctagctgtatacgcgtggatcgacaaagaagttggttactgccaaggaatg 109 ||||||||||| |||| ||||| ||||| ||||| || || || || || ||||||||| Sbjct: 598 tgggatattctgtctgtttacgcctggatagacaacgatgtcgggtattgtcaaggaatg 657 Query: 110 agtgat 115 |||||| Sbjct: 658 agtgat 663
>dbj|AK221621.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-93-E05 Length = 1854 Score = 58.0 bits (29), Expect = 4e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 370 tgtacctttgggagatgatgtgggccctagaatatga 406 |||||||||||||||||||||||||||| || ||||| Sbjct: 1187 tgtacctttgggagatgatgtgggccctcgagtatga 1223 Score = 44.1 bits (22), Expect = 0.54 Identities = 55/66 (83%) Strand = Plus / Plus Query: 50 tgggatattctagctgtatacgcgtggatcgacaaagaagttggttactgccaaggaatg 109 ||||||||||| |||| ||||| ||||| ||||| || || || || || ||||||||| Sbjct: 853 tgggatattctgtctgtttacgcctggatagacaacgatgtcgggtattgtcaaggaatg 912 Query: 110 agtgat 115 |||||| Sbjct: 913 agtgat 918
>gb|BC073710.1| Xenopus laevis MGC83651 protein, mRNA (cDNA clone MGC:83651 IMAGE:5085223), complete cds Length = 5690 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 80 gacaaagaagttggttactgccaaggaat 108 ||||||||||||||||||||||| ||||| Sbjct: 3204 gacaaagaagttggttactgccagggaat 3232
>emb|CT485698.1| Xenopus tropicalis finished cDNA, clone TEgg050k01 Length = 4137 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 80 gacaaagaagttggttactgccaaggaat 108 ||||||||||||||||||||||| ||||| Sbjct: 2820 gacaaagaagttggttactgccagggaat 2848
>ref|NM_129910.1| Arabidopsis thaliana unknown protein AT2G43490 mRNA, complete cds Length = 2271 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Plus Query: 91 tggttactgccaaggaatgagtgattta 118 |||||| ||||||||||||||||||||| Sbjct: 1197 tggttattgccaaggaatgagtgattta 1224
>gb|AY429356.1| Arabidopsis thaliana At2g43490 mRNA, partial sequence, alternatively spliced Length = 1810 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Plus Query: 91 tggttactgccaaggaatgagtgattta 118 |||||| ||||||||||||||||||||| Sbjct: 267 tggttattgccaaggaatgagtgattta 294
>gb|AY429355.1| Arabidopsis thaliana At2g43490 mRNA, partial sequence Length = 1816 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Plus Query: 91 tggttactgccaaggaatgagtgattta 118 |||||| ||||||||||||||||||||| Sbjct: 267 tggttattgccaaggaatgagtgattta 294
>ref|NM_127603.2| Arabidopsis thaliana unknown protein AT2G20440 mRNA, complete cds Length = 1676 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 369 ttgtacctttgggagatgatgtgggc 394 ||||||||||||||| |||||||||| Sbjct: 1053 ttgtacctttgggagctgatgtgggc 1078
>ref|NM_118997.3| Arabidopsis thaliana unknown protein AT4G28550 mRNA, complete cds Length = 1685 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 369 ttgtacctttgggagatgatgtgggc 394 ||||||||||||||| |||||||||| Sbjct: 1043 ttgtacctttgggagctgatgtgggc 1068
>ref|NM_122347.2| Arabidopsis thaliana unknown protein AT5G24390 mRNA, complete cds Length = 2816 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 90 ttggttactgccaaggaatgagtgat 115 |||| ||||||||||||||||||||| Sbjct: 1223 ttggctactgccaaggaatgagtgat 1248
>gb|AC163672.4| Mus musculus BAC clone RP23-23B15 from chromosome 3, complete sequence Length = 190599 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 88 agttggttactgccaaggaatgagtg 113 |||||||||||||||||| ||||||| Sbjct: 78944 agttggttactgccaaggtatgagtg 78919
>gb|BT012285.1| Arabidopsis thaliana At2g20440 gene, complete cds Length = 930 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 369 ttgtacctttgggagatgatgtgggc 394 ||||||||||||||| |||||||||| Sbjct: 565 ttgtacctttgggagctgatgtgggc 590
>gb|AC121582.3| Mus musculus BAC clone RP23-257I21 from 3, complete sequence Length = 201935 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 88 agttggttactgccaaggaatgagtg 113 |||||||||||||||||| ||||||| Sbjct: 182759 agttggttactgccaaggtatgagtg 182734
>emb|AL449104.5| Human DNA sequence from clone RP1-173P22 on chromosome 6 Contains the 3' end of the HCRTR2 gene for hypocretin (orexin) receptor 2, complete sequence Length = 120466 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 563 tatttctgttttcctggttgct 584 |||||||||||||||||||||| Sbjct: 10965 tatttctgttttcctggttgct 10986
>gb|AY062031.1| Homo sapiens hypocretin receptor 2 (HCRTR2) gene, complete cds Length = 168575 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 563 tatttctgttttcctggttgct 584 |||||||||||||||||||||| Sbjct: 45565 tatttctgttttcctggttgct 45586
>emb|BX821916.1|CNS0A99M Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL84ZD07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1693 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 369 ttgtacctttgggagatgatgtgggc 394 ||||||||||||||| |||||||||| Sbjct: 1054 ttgtacctttgggagctgatgtgggc 1079
>emb|BX828012.1|CNS0A49L Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH44ZG10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1627 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 369 ttgtacctttgggagatgatgtgggc 394 ||||||||||||||| |||||||||| Sbjct: 1026 ttgtacctttgggagctgatgtgggc 1051
>emb|BX832627.1|CNS0A15B Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH85ZD09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2164 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 90 ttggttactgccaaggaatgagtgat 115 |||| ||||||||||||||||||||| Sbjct: 1223 ttggctactgccaaggaatgagtgat 1248
>gb|BT022110.1| Arabidopsis thaliana At5g24390 mRNA, complete cds Length = 1830 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 90 ttggttactgccaaggaatgagtgat 115 |||| ||||||||||||||||||||| Sbjct: 1140 ttggctactgccaaggaatgagtgat 1165
>dbj|AK176689.1| Arabidopsis thaliana mRNA for GTPase activator like protein of Rab-like small GTPases, complete cds, clone: RAFL25-23-I15 Length = 2240 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 90 ttggttactgccaaggaatgagtgat 115 |||| ||||||||||||||||||||| Sbjct: 1250 ttggctactgccaaggaatgagtgat 1275
>dbj|AB016884.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16H17 Length = 45529 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 90 ttggttactgccaaggaatgagtgat 115 |||| ||||||||||||||||||||| Sbjct: 30963 ttggctactgccaaggaatgagtgat 30938
>ref|NM_124638.2| Arabidopsis thaliana unknown protein AT5G52590 mRNA, complete cds Length = 1432 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 92 ggttactgccaaggaatgagtgatt 116 ||||||||||| ||||||||||||| Sbjct: 709 ggttactgccagggaatgagtgatt 733
>ref|XM_468334.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1747 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 147 acgaagcagacgcgttttggtgctttgag 175 ||||||| || |||||||||||||||||| Sbjct: 910 acgaagcggatgcgttttggtgctttgag 938
>gb|AC124414.3| Mus musculus BAC clone RP24-282K24 from chromosome 12, complete sequence Length = 176443 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 585 agtgtgttgaaagagaacagt 605 ||||||||||||||||||||| Sbjct: 53338 agtgtgttgaaagagaacagt 53358
>ref|XM_662772.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.40223) partial mRNA Length = 1080 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 89 gttggttactgccaaggaatg 109 ||||||||||||||||||||| Sbjct: 586 gttggttactgccaaggaatg 606
>emb|CR354535.11| Zebrafish DNA sequence from clone CH211-199M16 in linkage group 25, complete sequence Length = 225139 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 577 tggttgctagtgtgttgaaag 597 ||||||||||||||||||||| Sbjct: 203226 tggttgctagtgtgttgaaag 203246
>emb|AL714011.12| Mouse DNA sequence from clone RP23-380O17 on chromosome 4 Contains a CpG island, complete sequence Length = 166093 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 89 gttggttactgccaaggaatgagtg 113 ||||||||||||||||| ||||||| Sbjct: 49808 gttggttactgccaaggtatgagtg 49832
>emb|BX294110.8| Zebrafish DNA sequence from clone DKEYP-19H3 in linkage group 25, complete sequence Length = 176023 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 577 tggttgctagtgtgttgaaag 597 ||||||||||||||||||||| Sbjct: 26819 tggttgctagtgtgttgaaag 26799
>ref|XM_625792.1| Cryptosporidium parvum Iowa II TBC domain containing protein (cgd4_1980), partial mRNA Length = 1080 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 89 gttggttactgccaaggaatg 109 ||||||||||||||||||||| Sbjct: 586 gttggttactgccaaggaatg 606
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 147 acgaagcagacgcgttttggtgctttgag 175 ||||||| || |||||||||||||||||| Sbjct: 34674952 acgaagcggatgcgttttggtgctttgag 34674980
>dbj|AP004081.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1116_E04 Length = 94096 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 147 acgaagcagacgcgttttggtgctttgag 175 ||||||| || |||||||||||||||||| Sbjct: 31903 acgaagcggatgcgttttggtgctttgag 31931
>dbj|AK117830.1| Arabidopsis thaliana At5g52590 mRNA for unknown protein, complete cds, clone: RAFL18-03-A11 Length = 1432 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 92 ggttactgccaaggaatgagtgatt 116 ||||||||||| ||||||||||||| Sbjct: 709 ggttactgccagggaatgagtgatt 733
>dbj|AB005232.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBG8 Length = 80315 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 363 gactccttgtacctttgggag 383 ||||||||||||||||||||| Sbjct: 8350 gactccttgtacctttgggag 8330
>dbj|AK071602.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102D17, full insert sequence Length = 1747 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 147 acgaagcagacgcgttttggtgctttgag 175 ||||||| || |||||||||||||||||| Sbjct: 910 acgaagcggatgcgttttggtgctttgag 938
>gb|AY111365.1| Zea mays CL7625_1 mRNA sequence Length = 914 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 90 ttggttactgccaaggaatgagtga 114 ||||||| ||||||||||||||||| Sbjct: 771 ttggttattgccaaggaatgagtga 747
>gb|AC137584.4| Mus musculus BAC clone RP23-351O20 from 9, complete sequence Length = 197108 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 395 cctagaatatgatcctgacat 415 ||||||||||||||||||||| Sbjct: 112687 cctagaatatgatcctgacat 112707
>ref|NM_115819.2| Arabidopsis thaliana unknown protein AT3G59570 mRNA, complete cds Length = 2631 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 91 tggttactgccaaggaatgagtgattta 118 |||||| |||||||||||||| |||||| Sbjct: 1479 tggttattgccaaggaatgagcgattta 1506
>gb|AC005600.1| Homo sapiens chromosome 16, P1 clone 109-9G (LANL), complete sequence Length = 79586 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 agaaccagcttcagcacctt 239 |||||||||||||||||||| Sbjct: 48953 agaaccagcttcagcacctt 48934
>ref|NM_021056.1| Homo sapiens tuberous sclerosis 2 (TSC2), transcript variant 3, mRNA Length = 5411 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 agaaccagcttcagcacctt 239 |||||||||||||||||||| Sbjct: 2147 agaaccagcttcagcacctt 2128
>ref|NM_000548.2| Homo sapiens tuberous sclerosis 2 (TSC2), transcript variant 1, mRNA Length = 5543 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 agaaccagcttcagcacctt 239 |||||||||||||||||||| Sbjct: 2147 agaaccagcttcagcacctt 2128
>ref|NM_021055.1| Homo sapiens tuberous sclerosis 2 (TSC2), transcript variant 2, mRNA Length = 5414 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 agaaccagcttcagcacctt 239 |||||||||||||||||||| Sbjct: 2147 agaaccagcttcagcacctt 2128
>gb|AC093513.3| Homo sapiens chromosome 16 clone CTD-2517G10, complete sequence Length = 72483 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 agaaccagcttcagcacctt 239 |||||||||||||||||||| Sbjct: 18829 agaaccagcttcagcacctt 18848
>emb|BX465201.38| Zebrafish DNA sequence from clone DKEY-15F11 in linkage group 14, complete sequence Length = 262688 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 ggaatgagtgatttatgctc 123 |||||||||||||||||||| Sbjct: 2075 ggaatgagtgatttatgctc 2056
>gb|AC124578.4| Mus musculus BAC clone RP23-166C2 from 18, complete sequence Length = 213229 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 gttggttactgccaaggaat 108 |||||||||||||||||||| Sbjct: 58400 gttggttactgccaaggaat 58419
>gb|AC110530.10| Mus musculus chromosome 9, clone RP23-414K12, complete sequence Length = 207312 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 gatgcacacagcaatctgtt 212 |||||||||||||||||||| Sbjct: 190397 gatgcacacagcaatctgtt 190378
>emb|CR725971.1|CNS0GN3T Tetraodon nigroviridis full-length cDNA Length = 1680 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 accagcttcagcaccttgcc 242 |||||||||||||||||||| Sbjct: 1121 accagcttcagcaccttgcc 1102
>emb|CR725014.2|CNS0GMD8 Tetraodon nigroviridis full-length cDNA Length = 1201 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 accagcttcagcaccttgcc 242 |||||||||||||||||||| Sbjct: 616 accagcttcagcaccttgcc 597
>emb|CR723631.2|CNS0GLAT Tetraodon nigroviridis full-length cDNA Length = 1197 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 accagcttcagcaccttgcc 242 |||||||||||||||||||| Sbjct: 617 accagcttcagcaccttgcc 598
>emb|CR679738.2|CNS0FNFQ Tetraodon nigroviridis full-length cDNA Length = 1081 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 accagcttcagcaccttgcc 242 |||||||||||||||||||| Sbjct: 514 accagcttcagcaccttgcc 495
>emb|CR671923.2|CNS0FHFD Tetraodon nigroviridis full-length cDNA Length = 1667 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 accagcttcagcaccttgcc 242 |||||||||||||||||||| Sbjct: 1088 accagcttcagcaccttgcc 1069
>emb|CR670269.2|CNS0FG5F Tetraodon nigroviridis full-length cDNA Length = 1094 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 accagcttcagcaccttgcc 242 |||||||||||||||||||| Sbjct: 515 accagcttcagcaccttgcc 496
>emb|CR664951.2|CNS0FC1P Tetraodon nigroviridis full-length cDNA Length = 1087 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 accagcttcagcaccttgcc 242 |||||||||||||||||||| Sbjct: 508 accagcttcagcaccttgcc 489
>emb|CR659681.2|CNS0F7ZB Tetraodon nigroviridis full-length cDNA Length = 1094 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 accagcttcagcaccttgcc 242 |||||||||||||||||||| Sbjct: 515 accagcttcagcaccttgcc 496
>ref|XM_793957.1| PREDICTED: Strongylocentrotus purpuratus similar to CG11727-PB, isoform B (LOC594521), mRNA Length = 1326 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 80 gacaaagaagttggttactgccaaggaa 107 |||| ||| ||||||||||||||||||| Sbjct: 466 gacagagaggttggttactgccaaggaa 493
>gb|BC048239.1| Mus musculus O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase), mRNA (cDNA clone IMAGE:6486248), containing frame-shift errors Length = 5168 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 ctgatgcacacagcaatctg 210 |||||||||||||||||||| Sbjct: 1277 ctgatgcacacagcaatctg 1296
>gb|BC038435.1| Mus musculus O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase), mRNA (cDNA clone IMAGE:5035549) Length = 5469 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 ctgatgcacacagcaatctg 210 |||||||||||||||||||| Sbjct: 1580 ctgatgcacacagcaatctg 1599
>gb|BC057319.1| Mus musculus O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase), mRNA (cDNA clone MGC:66789 IMAGE:6830845), complete cds Length = 5337 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 ctgatgcacacagcaatctg 210 |||||||||||||||||||| Sbjct: 1444 ctgatgcacacagcaatctg 1463
>emb|BX647816.1|HSM807962 Homo sapiens mRNA; cDNA DKFZp686N1252 (from clone DKFZp686N1252) Length = 5107 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 agaaccagcttcagcacctt 239 |||||||||||||||||||| Sbjct: 1818 agaaccagcttcagcacctt 1799
>ref|NM_139144.2| Mus musculus O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) (Ogt), mRNA Length = 5381 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 ctgatgcacacagcaatctg 210 |||||||||||||||||||| Sbjct: 1508 ctgatgcacacagcaatctg 1527
>gb|AC147961.3| Medicago truncatula chromosome 7 BAC clone mth2-39i23, complete sequence Length = 131165 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 tcaaggatataaaccaagag 480 |||||||||||||||||||| Sbjct: 102606 tcaaggatataaaccaagag 102625
>gb|AF363030.1|AF363030 Mus musculus UDP-N-acetylglucosaminyltransferase mRNA, complete cds Length = 3141 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 ctgatgcacacagcaatctg 210 |||||||||||||||||||| Sbjct: 1286 ctgatgcacacagcaatctg 1305
>dbj|AB210000.1| Homo sapiens mRNA for SLC9A3R2 variant protein, partial cds, clone: eh00696 Length = 5421 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 agaaccagcttcagcacctt 239 |||||||||||||||||||| Sbjct: 2235 agaaccagcttcagcacctt 2216
>gb|AF539527.1| Mus musculus strain C57BL/6 O-linked GlcNAc transferase gene, complete cds Length = 46067 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 ctgatgcacacagcaatctg 210 |||||||||||||||||||| Sbjct: 28136 ctgatgcacacagcaatctg 28155
>dbj|AK117388.1| Arabidopsis thaliana At3g59570 mRNA for unknown protein, complete cds, clone: RAFL16-97-D24 Length = 2585 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 91 tggttactgccaaggaatgagtgattta 118 |||||| |||||||||||||| |||||| Sbjct: 1479 tggttattgccaaggaatgagcgattta 1506
>dbj|AK068743.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013162A17, full insert sequence Length = 2631 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 tgccaaggaatgagtgattt 117 |||||||||||||||||||| Sbjct: 1631 tgccaaggaatgagtgattt 1650
>gb|AE017125.1| Helicobacter hepaticus ATCC 51449, complete genome Length = 1799146 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 514 agagggcgaatatgaagagc 533 |||||||||||||||||||| Sbjct: 1255858 agagggcgaatatgaagagc 1255839
>gb|AC167695.2| Reniera sp. JGI-2005 clone JGIBAYC-5A11, complete sequence Length = 33303 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 gaatatgatcctgacatgtt 418 |||||||||||||||||||| Sbjct: 31387 gaatatgatcctgacatgtt 31368
>gb|L48531.1|HUMTSC2G15 Homo sapiens tuberin (TSC2) gene, exons 17, 18, and 19 Length = 1220 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 agaaccagcttcagcacctt 239 |||||||||||||||||||| Sbjct: 958 agaaccagcttcagcacctt 939
>emb|X75621.1|HSTSC2 Homo sapiens TSC2 mRNA for tuberin Length = 5543 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 agaaccagcttcagcacctt 239 |||||||||||||||||||| Sbjct: 2147 agaaccagcttcagcacctt 2128
>emb|AL806534.3| Mouse DNA sequence from clone RP23-334A11 on chromosome X, complete sequence Length = 130689 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 ctgatgcacacagcaatctg 210 |||||||||||||||||||| Sbjct: 125590 ctgatgcacacagcaatctg 125609 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,406,350 Number of Sequences: 3902068 Number of extensions: 4406350 Number of successful extensions: 73090 Number of sequences better than 10.0: 85 Number of HSP's better than 10.0 without gapping: 85 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72817 Number of HSP's gapped (non-prelim): 270 length of query: 616 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 593 effective length of database: 17,143,297,704 effective search space: 10165975538472 effective search space used: 10165975538472 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)