>POLS_CHIK3 (Q5XXP3) Structural polyprotein (p130) [Contains: Capsid protein|
           (EC 3.4.21.-) (Coat protein) (C); p62 (E3/E2); E3
           protein (Spike glycoprotein E3); E2 envelope
           glycoprotein (Spike glycoprotein E2); 6K protein; E1
           envelope glycoprotein (Spike g
          Length = 1248

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -1

Query: 110 YSYNKNQPFF*VEFPMYVDAVALIVGCACMKSLPXC 3
           Y +N+ QP F ++    +   ALIV C C+K LP C
Sbjct: 757 YLWNEQQPLFWLQ--ALIPLAALIVLCNCLKLLPCC 790

>POLS_CHIKS (Q8JUX5) Structural polyprotein (p130) [Contains: Capsid protein|
           (EC 3.4.21.-) (Coat protein) (C); p62 (E3/E2); E3
           protein (Spike glycoprotein E3); E2 envelope
           glycoprotein (Spike glycoprotein E2); 6K protein; E1
           envelope glycoprotein (Spike g
          Length = 1248

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 113 LYSYNKNQPFF*VEFPMYVDAVALIVGCACMKSLPXC 3
           +Y +N+ QP F ++    +   ALIV C C++ LP C
Sbjct: 756 VYLWNEQQPLFWLQ--ALIPLAALIVLCNCLRLLPCC 790

>POLS_CHIKN (Q5WQY5) Structural polyprotein (p130) [Contains: Capsid protein|
           (EC 3.4.21.-) (Coat protein) (C); p62 (E3/E2); E3
           protein (Spike glycoprotein E3); E2 envelope
           glycoprotein (Spike glycoprotein E2); 6K protein; E1
           envelope glycoprotein (Spike g
          Length = 1248

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 113 LYSYNKNQPFF*VEFPMYVDAVALIVGCACMKSLPXC 3
           +Y +N+ QP F ++    +   ALIV C C++ LP C
Sbjct: 756 VYLWNEQQPLFWLQ--AIIPLAALIVLCNCLRLLPCC 790

>POLS_ONNVG (P22056) Structural polyprotein (p130) [Contains: Capsid protein|
           (EC 3.4.21.-) (Coat protein) (C); p62 (E3/E2); E3
           protein (Spike glycoprotein E3); E2 envelope
           glycoprotein (Spike glycoprotein E2); 6K protein; E1
           envelope glycoprotein (Spike g
          Length = 1247

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 110 YSYNKNQPFF*VEFPMYVDAVALIVGCACMKSLPXC 3
           Y +N+ QP F ++  + +   A IV C C+K LP C
Sbjct: 756 YLWNEQQPLFWLQ--LLIPLSAAIVVCNCLKLLPCC 789


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,793,518
Number of Sequences: 219361
Number of extensions: 183294
Number of successful extensions: 469
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 80,573,946
effective HSP length: 20
effective length of database: 76,186,726
effective search space used: 1828481424
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)