ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal22p18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC168268.2| Mus musculus BAC clone RP23-339K12 from chromosom... 40 1.6
2gb|AC123659.11| Mus musculus chromosome 17, clone RP23-192P18, c... 40 1.6
3gb|AC147618.3| Mus musculus chromosome 19 clone RP24-245M20, com... 40 1.6
4gb|AC128739.4| Mus musculus BAC clone RP24-168G14 from chromosom... 40 1.6
5emb|BX247885.11| Human DNA sequence from clone RP4-669P10 on chr... 40 1.6
6emb|AL512600.5| Human DNA sequence from clone RP11-452A14 on chr... 40 1.6
7emb|AL021878.2|HS257I20 Human DNA sequence from clone RP1-257I20... 40 1.6
8gb|AC162906.3| Mus musculus BAC clone RP24-282L18 from chromosom... 40 1.6
9emb|CR762473.7| Zebrafish DNA sequence from clone DKEY-189I24 in... 40 1.6
10gb|AC073565.5| Mus musculus strain C57BL/6J chromosome 12 clone ... 40 1.6
11gb|AC021735.8| Homo sapiens chromosome 18, clone RP11-107G7, com... 40 1.6
12gb|AC158399.2| Mus musculus BAC clone RP23-246A2 from chromosome... 40 1.6
13gb|AC069257.28| Homo sapiens 3 BAC RP11-447L10 (Roswell Park Can... 40 1.6
14tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy ... 40 1.6
15emb|AL929334.12| Zebrafish DNA sequence from clone DKEY-24F15, c... 40 1.6
16gb|AC004227.1| Homo sapiens chromosome 5, P1 clone 356a8 (LBNL H... 38 6.3
17gb|AC140389.3| Mus musculus BAC clone RP24-202H2 from chromosome... 38 6.3
18gb|AC122270.4| Mus musculus BAC clone RP23-220N16 from 17, compl... 38 6.3
19emb|CR751228.19| Zebrafish DNA sequence from clone DKEY-168J9 in... 38 6.3
20gb|AC098880.4| Mus musculus BAC clone RP23-121O1 from 17, comple... 38 6.3
21gb|AC111131.8| Mus musculus, clone RP23-340N7, complete sequence 38 6.3
22gb|AC102409.10| Mus musculus chromosome 18, clone RP24-365B20, c... 38 6.3
23gb|AC158924.6| Mus musculus chromosome 18, clone RP23-109P21, co... 38 6.3
24emb|Z73967.1|HS315B17 Human DNA sequence from clone RP1-315B17 o... 38 6.3
25emb|AL353691.12| Human DNA sequence from clone RP5-1174J21 on ch... 38 6.3
26emb|AL136983.11| Human DNA sequence from clone RP11-247D3 on chr... 38 6.3
27gb|AC120241.5| Rattus norvegicus X BAC CH230-390I1 (Children's H... 38 6.3
28gb|AC163901.2| Mus musculus BAC clone RP23-269N21 from chromosom... 38 6.3
29gb|AC119414.51| Medicago truncatula clone mth2-23d7, complete se... 38 6.3
30gb|AC013287.11| Homo sapiens chromosome 10 clone RP11-76F14, com... 38 6.3
31gb|AC010975.9| Homo sapiens BAC clone RP11-191H23 from 2, comple... 38 6.3
32gb|AC146977.22| Mus musculus chromosome 13, clone RP23-106I12, c... 38 6.3
33emb|BX005255.10| Mouse DNA sequence from clone RP23-228N14 on ch... 38 6.3
34gb|AC151280.3| Mus musculus BAC clone RP24-79H13 from 17, comple... 38 6.3
35gb|AC153814.4| Mus musculus chromosome 17, clone RP23-323F20, co... 38 6.3
36gb|AE015450.1| Mycoplasma gallisepticum strain R complete genome 38 6.3
37dbj|AP002954.1| Homo sapiens genomic DNA, chromosome 11q, clons:... 38 6.3
38dbj|AP000941.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 38 6.3
39emb|CT030657.5| Mouse DNA sequence from clone RP23-142A12 on chr... 38 6.3
40gb|AC002210.1|AC002210 Homo sapiens (subclone 2_h1 from P1 H32) ... 38 6.3 
>gb|AC168268.2| Mus musculus BAC clone RP23-339K12 from chromosome 17, complete
             sequence
          Length = 184085

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 66    aggaaactcaactcagaaaaaagg 89
             |||||||||| |||||||||||||
Sbjct: 16450 aggaaactcatctcagaaaaaagg 16473
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>gb|AC123659.11| Mus musculus chromosome 17, clone RP23-192P18, complete sequence
          Length = 207169

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 66    aggaaactcaactcagaaaaaagg 89
             |||||||||| |||||||||||||
Sbjct: 28675 aggaaactcatctcagaaaaaagg 28652
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>gb|AC147618.3| Mus musculus chromosome 19 clone RP24-245M20, complete sequence
          Length = 172863

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 47     caactgcatcaacatacataggaa 70
              |||||||||||| |||||||||||
Sbjct: 109926 caactgcatcaaaatacataggaa 109949
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>gb|AC128739.4| Mus musculus BAC clone RP24-168G14 from chromosome 19, complete
            sequence
          Length = 195342

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 47   caactgcatcaacatacataggaa 70
            |||||||||||| |||||||||||
Sbjct: 9834 caactgcatcaaaatacataggaa 9857
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>emb|BX247885.11| Human DNA sequence from clone RP4-669P10 on chromosome 22q13.31-13.33,
             complete sequence
          Length = 133246

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    aaactcaactcagaaaaaag 88
             ||||||||||||||||||||
Sbjct: 86870 aaactcaactcagaaaaaag 86889
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>emb|AL512600.5| Human DNA sequence from clone RP11-452A14 on chromosome 6, complete
             sequence
          Length = 141172

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    ctcaactcagaaaaaaggtt 91
             ||||||||||||||||||||
Sbjct: 75139 ctcaactcagaaaaaaggtt 75158
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>emb|AL021878.2|HS257I20 Human DNA sequence from clone RP1-257I20 on chromosome 22q13.1-13.2
              Contains the 3' end of a novel gene, CYP2D7AP and CYP2D8P
              (cytochrome P450) pseudogenes,part of the TCF20 gene for
              transcription factor 20 (AR1, KIAA0292), the NDUFA6 gene
              for NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 6, a
              pseudogene similar to GTP-binding protein genes, ESTs,
              STSs, GSSs and a ca repeat polymorphism, complete sequence
          Length = 114846

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     aaactcaactcagaaaaaag 88
              ||||||||||||||||||||
Sbjct: 113274 aaactcaactcagaaaaaag 113293
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>gb|AC162906.3| Mus musculus BAC clone RP24-282L18 from chromosome 12, complete sequence
          Length = 167135

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 66     aggaaactcaactcagaaaaaagg 89
              |||||||||| |||||||||||||
Sbjct: 144407 aggaaactcacctcagaaaaaagg 144384
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>emb|CR762473.7| Zebrafish DNA sequence from clone DKEY-189I24 in linkage group 13,
             complete sequence
          Length = 78872

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    aaaaaaggttgatttttgtt 101
             ||||||||||||||||||||
Sbjct: 40006 aaaaaaggttgatttttgtt 40025
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>gb|AC073565.5| Mus musculus strain C57BL/6J chromosome 12 clone RP23-70F21, complete
              sequence
          Length = 180673

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 66     aggaaactcaactcagaaaaaagg 89
              |||||||||| |||||||||||||
Sbjct: 153598 aggaaactcacctcagaaaaaagg 153621
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>gb|AC021735.8| Homo sapiens chromosome 18, clone RP11-107G7, complete sequence
          Length = 170510

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    gaaactcaactcagaaaaaa 87
             ||||||||||||||||||||
Sbjct: 67920 gaaactcaactcagaaaaaa 67901
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>gb|AC158399.2| Mus musculus BAC clone RP23-246A2 from chromosome 14, complete sequence
          Length = 198948

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    gaaaaaaggttgatttttgt 100
             ||||||||||||||||||||
Sbjct: 21087 gaaaaaaggttgatttttgt 21106
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>gb|AC069257.28| Homo sapiens 3 BAC RP11-447L10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 188969

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 82     aaaaaaggttgatttttgttataa 105
              |||||||||| |||||||||||||
Sbjct: 155641 aaaaaaggtttatttttgttataa 155618
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>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region
               locus, strain C57BL/6
          Length = 2500000

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 66      aggaaactcaactcagaaaaaagg 89
               |||||||||| |||||||||||||
Sbjct: 1338227 aggaaactcacctcagaaaaaagg 1338250
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>emb|AL929334.12| Zebrafish DNA sequence from clone DKEY-24F15, complete sequence
          Length = 226833

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     aaaaaaggttgatttttgtt 101
              ||||||||||||||||||||
Sbjct: 155969 aaaaaaggttgatttttgtt 155950
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>gb|AC004227.1| Homo sapiens chromosome 5, P1 clone 356a8 (LBNL H32), complete sequence
          Length = 72941

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 83    aaaaaggttgatttttgttataa 105
             ||||||| |||||||||||||||
Sbjct: 50503 aaaaaggctgatttttgttataa 50481
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>gb|AC140389.3| Mus musculus BAC clone RP24-202H2 from chromosome 18, complete
            sequence
          Length = 169195

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 55   tcaacatacataggaaactcaac 77
            |||| ||||||||||||||||||
Sbjct: 3302 tcaagatacataggaaactcaac 3280
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>gb|AC122270.4| Mus musculus BAC clone RP23-220N16 from 17, complete sequence
          Length = 196395

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 66    aggaaactcaactcagaaaaaag 88
             |||||||||| ||||||||||||
Sbjct: 30242 aggaaactcatctcagaaaaaag 30220
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>emb|CR751228.19| Zebrafish DNA sequence from clone DKEY-168J9 in linkage group 22,
             complete sequence
          Length = 124694

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 76    actcagaaaaaaggttgat 94
             |||||||||||||||||||
Sbjct: 63524 actcagaaaaaaggttgat 63506
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>gb|AC098880.4| Mus musculus BAC clone RP23-121O1 from 17, complete sequence
          Length = 218299

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 66     aggaaactcaactcagaaaaaag 88
              |||||||||| ||||||||||||
Sbjct: 163618 aggaaactcatctcagaaaaaag 163596
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>gb|AC111131.8| Mus musculus, clone RP23-340N7, complete sequence
          Length = 202386

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 51    tgcatcaacatacataggaaact 73
             |||||||| ||||||||||||||
Sbjct: 76217 tgcatcaatatacataggaaact 76239
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>gb|AC102409.10| Mus musculus chromosome 18, clone RP24-365B20, complete sequence
          Length = 137137

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 67    ggaaactcaactcagaaaa 85
             |||||||||||||||||||
Sbjct: 82907 ggaaactcaactcagaaaa 82889
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>gb|AC158924.6| Mus musculus chromosome 18, clone RP23-109P21, complete sequence
          Length = 254968

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 55    tcaacatacataggaaactcaac 77
             |||| ||||||||||||||||||
Sbjct: 54993 tcaagatacataggaaactcaac 55015
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>emb|Z73967.1|HS315B17 Human DNA sequence from clone RP1-315B17 on chromosome Xq22.2-22.3,
             complete sequence
          Length = 53185

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 82    aaaaaaggttgatttttgt 100
             |||||||||||||||||||
Sbjct: 19817 aaaaaaggttgatttttgt 19835
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>emb|AL353691.12| Human DNA sequence from clone RP5-1174J21 on chromosome Xp11.3-21.2
             Contains part of the CASK gene for
             calcium/calmodulin-dependent serine protein kinase (MAGUK
             family) and a ribosomal protein S15a (RPS15A) pseudogene,
             complete sequence
          Length = 106605

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 69    aaactcaactcagaaaaaa 87
             |||||||||||||||||||
Sbjct: 84760 aaactcaactcagaaaaaa 84778
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>emb|AL136983.11| Human DNA sequence from clone RP11-247D3 on chromosome 1 Contains part
             of the ASTN gene for astrotactin, complete sequence
          Length = 39967

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 65    taggaaactcaactcagaa 83
             |||||||||||||||||||
Sbjct: 16287 taggaaactcaactcagaa 16305
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>gb|AC120241.5| Rattus norvegicus X BAC CH230-390I1 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 174991

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 48    aactgcatcaacatacata 66
             |||||||||||||||||||
Sbjct: 17410 aactgcatcaacatacata 17392
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>gb|AC163901.2| Mus musculus BAC clone RP23-269N21 from chromosome 17, complete sequence
          Length = 202092

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 64     ataggaaactcaactcagaaaaa 86
              |||||||||||| ||||||||||
Sbjct: 187215 ataggaaactcacctcagaaaaa 187193
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>gb|AC119414.51| Medicago truncatula clone mth2-23d7, complete sequence
          Length = 159149

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 93     atttttgttataagaatac 111
              |||||||||||||||||||
Sbjct: 110499 atttttgttataagaatac 110481
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>gb|AC013287.11| Homo sapiens chromosome 10 clone RP11-76F14, complete sequence
          Length = 174578

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 91     tgatttttgttataagaatacaa 113
              |||||||||| ||||||||||||
Sbjct: 114327 tgatttttgtcataagaatacaa 114349
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>gb|AC010975.9| Homo sapiens BAC clone RP11-191H23 from 2, complete sequence
          Length = 171249

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 100    ttataagaatacaagccaaatat 122
              ||||||||||| |||||||||||
Sbjct: 110598 ttataagaataaaagccaaatat 110576
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>gb|AC146977.22| Mus musculus chromosome 13, clone RP23-106I12, complete sequence
          Length = 200131

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 66     aggaaactcaactcagaaaaaag 88
              |||||||||| ||||||||||||
Sbjct: 197025 aggaaactcatctcagaaaaaag 197047
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>emb|BX005255.10| Mouse DNA sequence from clone RP23-228N14 on chromosome X, complete
             sequence
          Length = 230114

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 51    tgcatcaacatacataggaaact 73
             |||||||| ||||||||||||||
Sbjct: 60060 tgcatcaatatacataggaaact 60082
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>gb|AC151280.3| Mus musculus BAC clone RP24-79H13 from 17, complete sequence
          Length = 214433

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 64     ataggaaactcaactcagaaaaa 86
              |||||||||||| ||||||||||
Sbjct: 116244 ataggaaactcacctcagaaaaa 116266
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>gb|AC153814.4| Mus musculus chromosome 17, clone RP23-323F20, complete sequence
          Length = 222749

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 66    aggaaactcaactcagaaaaaag 88
             |||||||||| ||||||||||||
Sbjct: 20964 aggaaactcatctcagaaaaaag 20942
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>gb|AE015450.1| Mycoplasma gallisepticum strain R complete genome
          Length = 996422

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 85     aaaggttgatttttgttat 103
              |||||||||||||||||||
Sbjct: 474385 aaaggttgatttttgttat 474367
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>dbj|AP002954.1| Homo sapiens genomic DNA, chromosome 11q, clons:CTC-89C10, complete
             sequence
          Length = 197215

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 95    ttttgttataagaatacaagcca 117
             |||| ||||||||||||||||||
Sbjct: 53951 ttttattataagaatacaagcca 53973
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>dbj|AP000941.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-861M13, complete
              sequence
          Length = 199321

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 95     ttttgttataagaatacaagcca 117
              |||| ||||||||||||||||||
Sbjct: 150763 ttttattataagaatacaagcca 150785
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>emb|CT030657.5| Mouse DNA sequence from clone RP23-142A12 on chromosome 13, complete
              sequence
          Length = 201402

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 66     aggaaactcaactcagaaaaaag 88
              |||||||||| ||||||||||||
Sbjct: 132714 aggaaactcatctcagaaaaaag 132692



 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 66     aggaaactcaactcagaaaaaag 88
              |||||||||| ||||||||||||
Sbjct: 107290 aggaaactcatctcagaaaaaag 107312
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>gb|AC002210.1|AC002210 Homo sapiens (subclone 2_h1 from P1 H32) DNA sequence, complete
           sequence
          Length = 3915

 Score = 38.2 bits (19), Expect = 6.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 83  aaaaaggttgatttttgttataa 105
           ||||||| |||||||||||||||
Sbjct: 840 aaaaaggctgatttttgttataa 818


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,328,228
Number of Sequences: 3902068
Number of extensions: 1328228
Number of successful extensions: 96027
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95912
Number of HSP's gapped (non-prelim): 115
length of query: 134
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 113
effective length of database: 17,151,101,840
effective search space: 1938074507920
effective search space used: 1938074507920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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