ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal22p17 |
|---|---|
| Clone Library Name | barley_pub |
>PSAH_HORVU (P20143) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) Length = 143 Score = 141 bits (356), Expect = 6e-34 Identities = 69/84 (82%), Positives = 69/84 (82%) Frame = +3 Query: 18 DDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXXXXXXXXVAYVSAS 197 DDIANTTGQWDLYGSDA SPYNGLQSKFFNTFAAPFTKR VAYVSAS Sbjct: 60 DDIANTTGQWDLYGSDAPSPYNGLQSKFFNTFAAPFTKRGLLLKFLLIGGGSLVAYVSAS 119 Query: 198 ASPDLLPIKKGPQLPPTPGPRGKI 269 ASPDLLPIKKGPQLPPTPGPRGKI Sbjct: 120 ASPDLLPIKKGPQLPPTPGPRGKI 143
>PSAH_ORYSA (P22181) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) (GOS5 protein) Length = 142 Score = 129 bits (324), Expect = 3e-30 Identities = 63/84 (75%), Positives = 64/84 (76%) Frame = +3 Query: 18 DDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXXXXXXXXVAYVSAS 197 +DI NTTGQWDLY SDA SPYN LQSKFF TFA PFTKR VAYVSAS Sbjct: 59 EDIGNTTGQWDLYASDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSAS 118 Query: 198 ASPDLLPIKKGPQLPPTPGPRGKI 269 ASPDLLPIKKGPQLPPTPGPRGKI Sbjct: 119 ASPDLLPIKKGPQLPPTPGPRGKI 142
>PSAH_MAIZE (O65101) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) Length = 142 Score = 128 bits (322), Expect = 5e-30 Identities = 63/84 (75%), Positives = 64/84 (76%) Frame = +3 Query: 18 DDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXXXXXXXXVAYVSAS 197 DDI NTTGQWDLYGSDA SPYN LQSKFF TFAAPFTKR +AYVSAS Sbjct: 59 DDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLLLGGGSLLAYVSAS 118 Query: 198 ASPDLLPIKKGPQLPPTPGPRGKI 269 ASPDLLPIKKGPQ PP PGPRGKI Sbjct: 119 ASPDLLPIKKGPQEPPQPGPRGKI 142
>PSAH_SPIOL (P22179) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) Length = 144 Score = 112 bits (280), Expect = 4e-25 Identities = 54/84 (64%), Positives = 60/84 (71%) Frame = +3 Query: 18 DDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXXXXXXXXVAYVSAS 197 +DIANTTGQWD+YGSDA SPYN LQSKFF TFAAPFTKR + YVSA+ Sbjct: 61 EDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSAN 120 Query: 198 ASPDLLPIKKGPQLPPTPGPRGKI 269 A D+LPI +GPQ PP GPRGKI Sbjct: 121 APQDVLPITRGPQQPPKLGPRGKI 144
>PSAH2_ARATH (Q9SUI6) Photosystem I reaction center subunit VI-2, chloroplast| precursor (PSI-H1) Length = 145 Score = 109 bits (273), Expect = 2e-24 Identities = 51/84 (60%), Positives = 61/84 (72%) Frame = +3 Query: 18 DDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXXXXXXXXVAYVSAS 197 +D+ NTTGQWD+YGSDA SPYN LQSKFF TFAAPFTKR + YVSA+ Sbjct: 62 EDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSAN 121 Query: 198 ASPDLLPIKKGPQLPPTPGPRGKI 269 ++ D+LPIK+GPQ PP GPRGK+ Sbjct: 122 STGDVLPIKRGPQEPPKLGPRGKL 145
>PSAH_BRARA (O04006) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) Length = 145 Score = 108 bits (271), Expect = 4e-24 Identities = 52/84 (61%), Positives = 60/84 (71%) Frame = +3 Query: 18 DDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXXXXXXXXVAYVSAS 197 +D+ NTTGQWDLYGSDA SPYN LQSKFF TFAAPFTKR + YVSAS Sbjct: 62 EDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSAS 121 Query: 198 ASPDLLPIKKGPQLPPTPGPRGKI 269 ++ D+LPIK+GPQ P GPRGK+ Sbjct: 122 STGDVLPIKRGPQEKPKLGPRGKL 145
>PSAH1_ARATH (Q9SUI7) Photosystem I reaction center subunit VI-1, chloroplast| precursor (PSI-H1) Length = 145 Score = 108 bits (269), Expect = 7e-24 Identities = 50/84 (59%), Positives = 61/84 (72%) Frame = +3 Query: 18 DDIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXXXXXXXXVAYVSAS 197 +D+ NTTGQWD+YGSDA SPYN LQSKFF TFAAPFTKR + YVSA+ Sbjct: 62 EDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSAT 121 Query: 198 ASPDLLPIKKGPQLPPTPGPRGKI 269 ++ ++LPIK+GPQ PP GPRGK+ Sbjct: 122 STGEVLPIKRGPQEPPKLGPRGKL 145
>PSAH_PEA (P20121) Photosystem I reaction center subunit VI (PSI-H)| (Light-harvesting complex I 11 kDa protein) (Fragment) Length = 36 Score = 48.1 bits (113), Expect = 9e-06 Identities = 20/25 (80%), Positives = 22/25 (88%) Frame = +3 Query: 18 DDIANTTGQWDLYGSDAASPYNGLQ 92 +DI NTTGQWDLYGSDA SPY+ LQ Sbjct: 12 EDIGNTTGQWDLYGSDAPSPYSXLQ 36
>PSAH_CHLRE (P13352) Photosystem I reaction center subunit VI, chloroplast| precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) (P28 protein) Length = 130 Score = 47.4 bits (111), Expect = 2e-05 Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 1/83 (1%) Frame = +3 Query: 21 DIANTTGQWDLYGSDAASPYNGLQSKFFNTFAAPFTKRXXXXXXXXXXXXXXVAYVSASA 200 D+ NTTG WD+YG D Y Q+KFF ++R + Sbjct: 43 DMENTTGSWDMYGVDEKKRYPDNQAKFFTQATDIISRRESLRALVALSGIAAIVTYGLKG 102 Query: 201 SPDL-LPIKKGPQLPPTPGPRGK 266 + D LPI KGPQ T G GK Sbjct: 103 AKDADLPITKGPQ---TTGENGK 122
>DAPA_RICTY (Q9AKE4) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 294 Score = 32.0 bits (71), Expect = 0.65 Identities = 10/37 (27%), Positives = 21/37 (56%) Frame = +2 Query: 260 RQDLNLILASPRLVLVYHGSRLISWIGIGSPVSMSFC 370 ++D N++ + +VL +H +I WI + S ++ C Sbjct: 180 KEDFNILTGNDEVVLAFHAQGVIGWISVTSNIAPKIC 216
>DAPA_RICPR (O05969) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 294 Score = 30.0 bits (66), Expect = 2.5 Identities = 9/35 (25%), Positives = 19/35 (54%) Frame = +2 Query: 266 DLNLILASPRLVLVYHGSRLISWIGIGSPVSMSFC 370 D N++ + +VL +H ++ WI + S ++ C Sbjct: 182 DFNILTGNDEVVLAFHAQGVVGWISVTSNIAPKLC 216
>YBGQ_ECOLI (P75750) Hypothetical outer membrane usher protein ybgQ precursor| Length = 815 Score = 29.6 bits (65), Expect = 3.2 Identities = 11/30 (36%), Positives = 20/30 (66%) Frame = +3 Query: 30 NTTGQWDLYGSDAASPYNGLQSKFFNTFAA 119 ++ G+WD+ G+ AAS Y+ + S + +F A Sbjct: 614 SSAGEWDISGTYAASDYSSVSSSWSGSFTA 643
>VE5_HPV33 (P06426) Probable protein E5| Length = 75 Score = 29.3 bits (64), Expect = 4.2 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = +2 Query: 323 LISWIGIGSPVSMSFC*YLMLYL 391 L+ W+ +GSP+ + FC L LYL Sbjct: 37 LLLWVFVGSPLKIFFCYLLFLYL 59
>PARP2_MOUSE (O88554) Poly [ADP-ribose] polymerase 2 (EC 2.4.2.30) (PARP-2)| (NAD(+) ADP-ribosyltransferase 2) (Poly[ADP-ribose] synthetase 2) (pADPRT-2) (mPARP-2) Length = 559 Score = 28.9 bits (63), Expect = 5.5 Identities = 10/18 (55%), Positives = 15/18 (83%) Frame = +2 Query: 290 PRLVLVYHGSRLISWIGI 343 P +L++HGSRL +W+GI Sbjct: 397 PNRMLLWHGSRLSNWVGI 414
>DAPF_RALSO (Q8Y344) Diaminopimelate epimerase (EC 5.1.1.7) (DAP epimerase)| Length = 292 Score = 28.9 bits (63), Expect = 5.5 Identities = 19/46 (41%), Positives = 23/46 (50%) Frame = +2 Query: 227 GAPAAAHPGTTRQDLNLILASPRLVLVYHGSRLISWIGIGSPVSMS 364 GA AAA G R +L SP V + G I+W G G PV M+ Sbjct: 229 GACAAAVAGIRRG----LLDSPVKVTTHGGDLTIAWAGEGEPVMMT 270
>MEF2D_XENLA (Q03413) Myocyte-specific enhancer factor 2D homolog (Serum| response factor-like protein 1) (SL-1) Length = 498 Score = 28.5 bits (62), Expect = 7.2 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 8/37 (21%) Frame = +3 Query: 183 YVSASASPDLLPIKKGPQL--------PPTPGPRGKI 269 Y+SA ASP LLP+ G L PP+P ++ Sbjct: 225 YISARASPGLLPVSNGNSLGKVIQAKSPPSPNQNSQL 261 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,743,036 Number of Sequences: 219361 Number of extensions: 1032831 Number of successful extensions: 3650 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3475 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3649 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
