ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal23d08 |
|---|---|
| Clone Library Name | barley_pub |
>YO092_YEAST (Q12010) Uncharacterized protein YOL092W| Length = 308 Score = 63.5 bits (153), Expect = 4e-10 Identities = 29/71 (40%), Positives = 46/71 (64%) Frame = +2 Query: 317 IAEVPQIITNYKQKSTEGLSIAFLMTWIVGDLFNLAGCFLEPATLPTQFYMALLYTITTV 496 I VPQI N+ +KS++GLS+ F++ W+ GD+FNL G ++ L T +A YT+ + Sbjct: 27 IVFVPQIYENFYRKSSDGLSLLFVVLWLAGDVFNLMGAVMQ-HLLSTMIILAAYYTVADI 85 Query: 497 ILTGQTIYYSH 529 IL GQ ++Y + Sbjct: 86 ILLGQCLWYDN 96 Score = 31.6 bits (70), Expect = 1.6 Identities = 12/30 (40%), Positives = 21/30 (70%) Frame = +2 Query: 320 AEVPQIITNYKQKSTEGLSIAFLMTWIVGD 409 + +PQI+ N+K+KS EG+S F + +G+ Sbjct: 226 SRIPQILLNFKRKSCEGISFLFFLFACLGN 255
>YBZ7_YEAST (P38279) Hypothetical 33.5 kDa protein in MRPS9-YSW1 intergenic| region Length = 296 Score = 61.6 bits (148), Expect = 1e-09 Identities = 27/66 (40%), Positives = 45/66 (68%) Frame = +2 Query: 326 VPQIITNYKQKSTEGLSIAFLMTWIVGDLFNLAGCFLEPATLPTQFYMALLYTITTVILT 505 VPQI N++++S EGLS+ F++ W++GD+FN+ G ++ LPT +A YT+ +IL Sbjct: 30 VPQIYENFRRQSAEGLSLLFIVLWLLGDIFNVMGAMMQ-NLLPTMIILAAYYTLADLILL 88 Query: 506 GQTIYY 523 Q ++Y Sbjct: 89 IQCMWY 94 Score = 33.1 bits (74), Expect = 0.55 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 12/62 (19%) Frame = +2 Query: 320 AEVPQIITNYKQKSTEGLSIAFLMTWIVGD------------LFNLAGCFLEPATLPTQF 463 + +PQI+ N+K+KS EG+S F + +G+ L AG L T+ QF Sbjct: 222 SRIPQIVLNFKRKSCEGVSFLFFLFACLGNTSFIISVLSASWLIGSAGTLLMDFTVFIQF 281 Query: 464 YM 469 ++ Sbjct: 282 FL 283
>STM1_SCHPO (Q10482) Seven transmembrane protein 1| Length = 271 Score = 47.4 bits (111), Expect = 3e-05 Identities = 22/66 (33%), Positives = 36/66 (54%) Frame = +2 Query: 326 VPQIITNYKQKSTEGLSIAFLMTWIVGDLFNLAGCFLEPATLPTQFYMALLYTITTVILT 505 +PQ++ NYK +S E +S FL+ W++GD FN+ G + T ++ Y ++ L Sbjct: 34 IPQLLENYKNQSGESISDLFLIIWLIGDFFNVLGSIYGNVS-STVLVLSFYYIVSDSTLL 92 Query: 506 GQTIYY 523 Q YY Sbjct: 93 MQIYYY 98 Score = 38.1 bits (87), Expect = 0.017 Identities = 20/43 (46%), Positives = 26/43 (60%) Frame = +2 Query: 320 AEVPQIITNYKQKSTEGLSIAFLMTWIVGDLFNLAGCFLEPAT 448 A +PQII N+K KSTEGLSI F + VG+ + PA+ Sbjct: 192 ARIPQIIKNHKAKSTEGLSIIFFVLASVGNTSYAFSILVFPAS 234
>YD03_SCHPO (Q10227) Hypothetical protein C2E12.03c in chromosome I| Length = 283 Score = 40.8 bits (94), Expect = 0.003 Identities = 15/29 (51%), Positives = 22/29 (75%) Frame = +2 Query: 326 VPQIITNYKQKSTEGLSIAFLMTWIVGDL 412 +PQII NY+ KSTEGL F+++W+V + Sbjct: 35 IPQIIKNYRAKSTEGLDTLFILSWVVASI 63
>YMP0_YEAST (Q03687) Hypothetical 46.9 kDa protein in PLB1-HXT2 intergenic| region Length = 405 Score = 40.0 bits (92), Expect = 0.004 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Frame = +2 Query: 326 VPQIITNYKQKSTEGLSIAFLMTWIVGDLFNLAGCFLEPATLPTQFYMALLYTIT-TVIL 502 +PQI YK KS +G + L++W+ GD + + F + L+ ++ + Sbjct: 269 LPQIAILYKLKSVQGFKLILLVSWLCGDTLKITYLIFGAKNISALFVIFALFQMSLDFYI 328 Query: 503 TGQTIYYSHIY 535 GQ IYY + Y Sbjct: 329 GGQYIYYRYYY 339
>CTNS_DROME (Q9VCR7) Cystinosin homolog| Length = 397 Score = 33.9 bits (76), Expect = 0.32 Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%) Frame = +2 Query: 329 PQIITNYKQKSTEGLSIAFLMTWIVG-DLFNLAGCFL 436 PQI +NY++KS EGL+ FL IVG L+++ C L Sbjct: 149 PQIWSNYRRKSVEGLNFDFLALNIVGFTLYSMFNCGL 185 Score = 30.4 bits (67), Expect = 3.6 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 10/81 (12%) Frame = +2 Query: 317 IAEVPQIITNYKQKSTEGLSIAFLMTWIVGDLFNLAGCFLEPATL---------PTQFYM 469 I VPQ + NY++KST G SI ++ G ++ L PT+F + Sbjct: 284 IKYVPQALMNYRRKSTSGWSIGNILLDFTGGTLSMLQMILNAHNYDDWVSIFGDPTKFGL 343 Query: 470 ALLYTITTVILTGQ-TIYYSH 529 L + V Q ++Y H Sbjct: 344 GLFSVLFDVFFMLQHYVFYRH 364
>NU5M_PHYIN (P50366) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 664 Score = 30.8 bits (68), Expect = 2.7 Identities = 19/69 (27%), Positives = 33/69 (47%) Frame = +2 Query: 335 IITNYKQKSTEGLSIAFLMTWIVGDLFNLAGCFLEPATLPTQFYMALLYTITTVILTGQT 514 +I Y + E I ++ WI LFN CFL + T + ++ +I+T++ + Sbjct: 45 LIIIYNSITNEYEYIIYISNWINSGLFNCNWCFLFDSL--TMIMLVVVTSISTLVHLYSS 102 Query: 515 IYYSHIYHL 541 Y +H HL Sbjct: 103 QYMAHDPHL 111
>EP400_MOUSE (Q8CHI8) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa| SWI2/SNF2-related protein) (Domino homolog) (mDomino) Length = 3072 Score = 30.4 bits (67), Expect = 3.6 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Frame = -1 Query: 315 PQLRTLASPRPKA--TPSFVLHRQYFR*TLAHSAQCGADGQLGGGVPLKIPI*VCAQPRV 142 PQL T+ +PRP A T + V + Q R T ++Q A GQ+ P + + P V Sbjct: 2772 PQLTTVTAPRPGALLTGTTVTNLQVARLTRVPTSQLQAQGQMQTQTPQPAQVALAKPPVV 2831 Query: 141 VRPVA 127 P A Sbjct: 2832 SVPAA 2836
>EP400_HUMAN (Q96L91) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa| SWI2/SNF2-related protein) (Domino homolog) (hDomino) (CAG repeat protein 32) (Trinucleotide repeat-containing gene 12 protein) Length = 3160 Score = 30.4 bits (67), Expect = 3.6 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Frame = -1 Query: 315 PQLRTLASPRPKA--TPSFVLHRQYFR*TLAHSAQCGADGQLGGGVPLKIPI*VCAQPRV 142 PQL T+ +PRP A T + V + Q R T ++Q A GQ+ P + + P V Sbjct: 2861 PQLTTVTAPRPGALLTGTTVANLQVARLTRVPTSQLQAQGQMQTQAPQPAQVALAKPPVV 2920 Query: 141 VRPVA 127 P A Sbjct: 2921 SVPAA 2925
>GLTB_ECOLI (P09831) Glutamate synthase [NADPH] large chain precursor (EC| 1.4.1.13) (Glutamate synthase alpha subunit) (NADPH-GOGAT) (GLTS alpha chain) Length = 1517 Score = 30.0 bits (66), Expect = 4.6 Identities = 14/47 (29%), Positives = 28/47 (59%) Frame = -1 Query: 330 GTSAIPQLRTLASPRPKATPSFVLHRQYFR*TLAHSAQCGADGQLGG 190 GT+ + +++ +AS R TP+++++ + +A A+ G GQL G Sbjct: 931 GTNKVSRIKQVASGRFGVTPAYLVNADVIQIKVAQGAKPGEGGQLPG 977
>MPU1_ARATH (Q9LTI3) Mannose-P-dolichol utilization defect 1 protein homolog| Length = 239 Score = 30.0 bits (66), Expect = 4.6 Identities = 18/67 (26%), Positives = 32/67 (47%) Frame = +2 Query: 323 EVPQIITNYKQKSTEGLSIAFLMTWIVGDLFNLAGCFLEPATLPTQFYMALLYTITTVIL 502 ++PQI+ KS +GLS+ ++G +LA C + LP + L + + ++ Sbjct: 46 KLPQIMKIVDNKSVKGLSVVAFELEVIGYTISLAYCLNK--DLPFSAFGELAFLLIQALI 103 Query: 503 TGQTIYY 523 IYY Sbjct: 104 LVACIYY 110
>CYHR_CANMA (P32071) Cycloheximide resistance protein| Length = 552 Score = 30.0 bits (66), Expect = 4.6 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +2 Query: 434 LEPATLPTQFYMALLYTITTVILTGQTIYYSHIYHLKVKKTG 559 LEP Y+AL+Y+I +I I Y+ I+H + + G Sbjct: 337 LEPVVFLIDIYIALVYSIMYLIFESVPIVYAGIHHFTLVEMG 378
>TOP2_LEICH (O61078) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1236 Score = 29.3 bits (64), Expect = 7.9 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Frame = -3 Query: 559 PSFLYFKMVDVAIVYCLSSENHSCDGI*QCHVKLCW-QSSRFQETASKVKQIPNY 398 P F++ +MV A+V + H DG+ K+ W R ASKV Q+ Y Sbjct: 666 PEFVHKEMVHFALVGNARAIPHCVDGLKPSQRKILWAMLRRHNSEASKVAQLSGY 720
>Y110_METJA (Q57574) Hypothetical protein MJ0110| Length = 93 Score = 29.3 bits (64), Expect = 7.9 Identities = 11/29 (37%), Positives = 20/29 (68%) Frame = +2 Query: 320 AEVPQIITNYKQKSTEGLSIAFLMTWIVG 406 A +PQ+I + K+K +S+AF++T+ G Sbjct: 23 ASLPQLIKSLKEKDMSNISLAFVITFTTG 51 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,739,963 Number of Sequences: 219361 Number of extensions: 1346315 Number of successful extensions: 2863 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2787 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2862 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4585734400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
