ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baal23c13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_192200.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 678 Score = 232 bits (117), Expect = 5e-58 Identities = 240/281 (85%) Strand = Plus / Plus Query: 25 atctcctgcttcgccgctggctttgccggcaacctcttcgccttcgctctcttcctgtcc 84 ||||||||||| || ||||| |||| |||||| |||| || | |||||||||||||| Sbjct: 19 atctcctgctttgctgctggtcttgcaggcaacatctttgcgcttgctctcttcctgtcg 78 Query: 85 ccagtgccgaccttcaagaggatcctcaaggccaagtccacggagcagttcgacgggctc 144 |||||| |||| || ||||||||||| |||||||| || || |||| |||||||||||| Sbjct: 79 ccagtgacgacgtttaagaggatcctgaaggccaaatcgaccgagcgattcgacgggctc 138 Query: 145 ccttacctgctctccctgctcaactgcttcatctgcctctggtatggcctcccctgggtc 204 ||||||||| |||| ||||| || ||| |||||||||| |||||||| || ||||||||| Sbjct: 139 ccttacctgttctcgctgctgaattgcctcatctgcctgtggtatggacttccctgggtc 198 Query: 205 tccgacggccggctgctcgtcgccaccgtcaacggcaccggagccgcgttccagctcgcc 264 |||| ||| ||||||||||||| ||||||||||||| ||||| | ||||||||||||| Sbjct: 199 gccgatggcaggctgctcgtcgctaccgtcaacggcattggagcggtgttccagctcgcc 258 Query: 265 tacatttgtctcttcttcatctacgccgacagcagaaagac 305 |||||||| |||||| || ||||||| |||||||| ||||| Sbjct: 259 tacatttgcctcttcatcttctacgcggacagcaggaagac 299
>dbj|AK059965.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-F10, full insert sequence Length = 1161 Score = 232 bits (117), Expect = 5e-58 Identities = 240/281 (85%) Strand = Plus / Plus Query: 25 atctcctgcttcgccgctggctttgccggcaacctcttcgccttcgctctcttcctgtcc 84 ||||||||||| || ||||| |||| |||||| |||| || | |||||||||||||| Sbjct: 70 atctcctgctttgctgctggtcttgcaggcaacatctttgcgcttgctctcttcctgtcg 129 Query: 85 ccagtgccgaccttcaagaggatcctcaaggccaagtccacggagcagttcgacgggctc 144 |||||| |||| || ||||||||||| |||||||| || || |||| |||||||||||| Sbjct: 130 ccagtgacgacgtttaagaggatcctgaaggccaaatcgaccgagcgattcgacgggctc 189 Query: 145 ccttacctgctctccctgctcaactgcttcatctgcctctggtatggcctcccctgggtc 204 ||||||||| |||| ||||| || ||| |||||||||| |||||||| || ||||||||| Sbjct: 190 ccttacctgttctcgctgctgaattgcctcatctgcctgtggtatggacttccctgggtc 249 Query: 205 tccgacggccggctgctcgtcgccaccgtcaacggcaccggagccgcgttccagctcgcc 264 |||| ||| ||||||||||||| ||||||||||||| ||||| | ||||||||||||| Sbjct: 250 gccgatggcaggctgctcgtcgctaccgtcaacggcattggagcggtgttccagctcgcc 309 Query: 265 tacatttgtctcttcttcatctacgccgacagcagaaagac 305 |||||||| |||||| || ||||||| |||||||| ||||| Sbjct: 310 tacatttgcctcttcatcttctacgcggacagcaggaagac 350
>ref|NM_192593.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 957 Score = 206 bits (104), Expect = 3e-50 Identities = 185/212 (87%) Strand = Plus / Plus Query: 87 agtgccgaccttcaagaggatcctcaaggccaagtccacggagcagttcgacgggctccc 146 |||| |||| || ||||||||||| |||||||| || || |||| ||||| |||||||| Sbjct: 285 agtgacgacgtttaagaggatcctgaaggccaaatcgaccgagcgattcgatgggctccc 344 Query: 147 ttacctgctctccctgctcaactgcttcatctgcctctggtatggcctcccctgggtctc 206 ||||||| |||| ||||| |||||| |||||||||| |||||||| || ||||||||| | Sbjct: 345 ttacctgttctcgctgctgaactgcctcatctgcctgtggtatggacttccctgggtcgc 404 Query: 207 cgacggccggctgctcgtcgccaccgtcaacggcaccggagccgcgttccagctcgccta 266 | | ||| ||||||||||| |||||||||||||||||||||| | ||||||||||||||| Sbjct: 405 caatggcaggctgctcgtcaccaccgtcaacggcaccggagcggtgttccagctcgccta 464 Query: 267 catttgtctcttcttcatctacgccgacagca 298 ||||||||||||| || ||||||| ||||||| Sbjct: 465 catttgtctcttcatcttctacgcggacagca 496
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 204 bits (103), Expect = 1e-49 Identities = 175/199 (87%) Strand = Plus / Plus Query: 100 aagaggatcctcaaggccaagtccacggagcagttcgacgggctcccttacctgctctcc 159 ||||||||||| |||||||| || || |||| ||||| ||||||||||||||| |||| Sbjct: 23167752 aagaggatcctgaaggccaaatcgaccgagcgattcgatgggctcccttacctgttctcg 23167811 Query: 160 ctgctcaactgcttcatctgcctctggtatggcctcccctgggtctccgacggccggctg 219 ||||| |||||| |||||||||| |||||||| || ||||||||| || | ||| ||||| Sbjct: 23167812 ctgctgaactgcctcatctgcctgtggtatggacttccctgggtcgccaatggcaggctg 23167871 Query: 220 ctcgtcgccaccgtcaacggcaccggagccgcgttccagctcgcctacatttgtctcttc 279 |||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct: 23167872 ctcgtcaccaccgtcaacggcaccggagcggtgttccagctcgcctacatttgtctcttc 23167931 Query: 280 ttcatctacgccgacagca 298 || ||||||| ||||||| Sbjct: 23167932 atcttctacgcggacagca 23167950 Score = 194 bits (98), Expect = 1e-46 Identities = 179/206 (86%) Strand = Plus / Plus Query: 100 aagaggatcctcaaggccaagtccacggagcagttcgacgggctcccttacctgctctcc 159 ||||||||||| |||||||| || || |||| ||||||||||||||||||||| |||| Sbjct: 28969175 aagaggatcctgaaggccaaatcgaccgagcgattcgacgggctcccttacctgttctcg 28969234 Query: 160 ctgctcaactgcttcatctgcctctggtatggcctcccctgggtctccgacggccggctg 219 ||||| || ||| |||||||||| |||||||| || ||||||||| |||| ||| ||||| Sbjct: 28969235 ctgctgaattgcctcatctgcctgtggtatggacttccctgggtcgccgatggcaggctg 28969294 Query: 220 ctcgtcgccaccgtcaacggcaccggagccgcgttccagctcgcctacatttgtctcttc 279 |||||||| ||||||||||||| ||||| | ||||||||||||||||||||| |||||| Sbjct: 28969295 ctcgtcgctaccgtcaacggcattggagcggtgttccagctcgcctacatttgcctcttc 28969354 Query: 280 ttcatctacgccgacagcagaaagac 305 || ||||||| |||||||| ||||| Sbjct: 28969355 atcttctacgcggacagcaggaagac 28969380 Score = 67.9 bits (34), Expect = 2e-08 Identities = 88/106 (83%) Strand = Plus / Plus Query: 163 ctcaactgcttcatctgcctctggtatggcctcccctgggtctccgacggccggctgctc 222 ||||||||| ||||||| |||||||| |||||||||| |||||| ||||| | ||| Sbjct: 19956443 ctcaactgcctcatctgtctctggtacggcctccccttcgtctcctacggcgtcgtcctc 19956502 Query: 223 gtcgccaccgtcaacggcaccggagccgcgttccagctcgcctaca 268 ||||||||||||||| || ||| ||| |||||||||||||||| Sbjct: 19956503 gtcgccaccgtcaactccatcggcgccctcttccagctcgcctaca 19956548
>dbj|AP003048.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0710A02 Length = 157201 Score = 204 bits (103), Expect = 1e-49 Identities = 175/199 (87%) Strand = Plus / Plus Query: 100 aagaggatcctcaaggccaagtccacggagcagttcgacgggctcccttacctgctctcc 159 ||||||||||| |||||||| || || |||| ||||| ||||||||||||||| |||| Sbjct: 99911 aagaggatcctgaaggccaaatcgaccgagcgattcgatgggctcccttacctgttctcg 99970 Query: 160 ctgctcaactgcttcatctgcctctggtatggcctcccctgggtctccgacggccggctg 219 ||||| |||||| |||||||||| |||||||| || ||||||||| || | ||| ||||| Sbjct: 99971 ctgctgaactgcctcatctgcctgtggtatggacttccctgggtcgccaatggcaggctg 100030 Query: 220 ctcgtcgccaccgtcaacggcaccggagccgcgttccagctcgcctacatttgtctcttc 279 |||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct: 100031 ctcgtcaccaccgtcaacggcaccggagcggtgttccagctcgcctacatttgtctcttc 100090 Query: 280 ttcatctacgccgacagca 298 || ||||||| ||||||| Sbjct: 100091 atcttctacgcggacagca 100109
>dbj|AP003378.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0047E11 Length = 148109 Score = 194 bits (98), Expect = 1e-46 Identities = 179/206 (86%) Strand = Plus / Plus Query: 100 aagaggatcctcaaggccaagtccacggagcagttcgacgggctcccttacctgctctcc 159 ||||||||||| |||||||| || || |||| ||||||||||||||||||||| |||| Sbjct: 13533 aagaggatcctgaaggccaaatcgaccgagcgattcgacgggctcccttacctgttctcg 13592 Query: 160 ctgctcaactgcttcatctgcctctggtatggcctcccctgggtctccgacggccggctg 219 ||||| || ||| |||||||||| |||||||| || ||||||||| |||| ||| ||||| Sbjct: 13593 ctgctgaattgcctcatctgcctgtggtatggacttccctgggtcgccgatggcaggctg 13652 Query: 220 ctcgtcgccaccgtcaacggcaccggagccgcgttccagctcgcctacatttgtctcttc 279 |||||||| ||||||||||||| ||||| | ||||||||||||||||||||| |||||| Sbjct: 13653 ctcgtcgctaccgtcaacggcattggagcggtgttccagctcgcctacatttgcctcttc 13712 Query: 280 ttcatctacgccgacagcagaaagac 305 || ||||||| |||||||| ||||| Sbjct: 13713 atcttctacgcggacagcaggaagac 13738
>dbj|AP003254.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0454A11 Length = 152240 Score = 194 bits (98), Expect = 1e-46 Identities = 179/206 (86%) Strand = Plus / Plus Query: 100 aagaggatcctcaaggccaagtccacggagcagttcgacgggctcccttacctgctctcc 159 ||||||||||| |||||||| || || |||| ||||||||||||||||||||| |||| Sbjct: 81798 aagaggatcctgaaggccaaatcgaccgagcgattcgacgggctcccttacctgttctcg 81857 Query: 160 ctgctcaactgcttcatctgcctctggtatggcctcccctgggtctccgacggccggctg 219 ||||| || ||| |||||||||| |||||||| || ||||||||| |||| ||| ||||| Sbjct: 81858 ctgctgaattgcctcatctgcctgtggtatggacttccctgggtcgccgatggcaggctg 81917 Query: 220 ctcgtcgccaccgtcaacggcaccggagccgcgttccagctcgcctacatttgtctcttc 279 |||||||| ||||||||||||| ||||| | ||||||||||||||||||||| |||||| Sbjct: 81918 ctcgtcgctaccgtcaacggcattggagcggtgttccagctcgcctacatttgcctcttc 81977 Query: 280 ttcatctacgccgacagcagaaagac 305 || ||||||| |||||||| ||||| Sbjct: 81978 atcttctacgcggacagcaggaagac 82003
>dbj|AP004361.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0062A24 Length = 148362 Score = 67.9 bits (34), Expect = 2e-08 Identities = 88/106 (83%) Strand = Plus / Plus Query: 163 ctcaactgcttcatctgcctctggtatggcctcccctgggtctccgacggccggctgctc 222 ||||||||| ||||||| |||||||| |||||||||| |||||| ||||| | ||| Sbjct: 59352 ctcaactgcctcatctgtctctggtacggcctccccttcgtctcctacggcgtcgtcctc 59411 Query: 223 gtcgccaccgtcaacggcaccggagccgcgttccagctcgcctaca 268 ||||||||||||||| || ||| ||| |||||||||||||||| Sbjct: 59412 gtcgccaccgtcaactccatcggcgccctcttccagctcgcctaca 59457
>dbj|AK104255.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-D11, full insert sequence Length = 1168 Score = 67.9 bits (34), Expect = 2e-08 Identities = 88/106 (83%) Strand = Plus / Plus Query: 163 ctcaactgcttcatctgcctctggtatggcctcccctgggtctccgacggccggctgctc 222 ||||||||| ||||||| |||||||| |||||||||| |||||| ||||| | ||| Sbjct: 345 ctcaactgcctcatctgtctctggtacggcctccccttcgtctcctacggcgtcgtcctc 404 Query: 223 gtcgccaccgtcaacggcaccggagccgcgttccagctcgcctaca 268 ||||||||||||||| || ||| ||| |||||||||||||||| Sbjct: 405 gtcgccaccgtcaactccatcggcgccctcttccagctcgcctaca 450
>dbj|AK104143.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-G10, full insert sequence Length = 1096 Score = 67.9 bits (34), Expect = 2e-08 Identities = 88/106 (83%) Strand = Plus / Plus Query: 163 ctcaactgcttcatctgcctctggtatggcctcccctgggtctccgacggccggctgctc 222 ||||||||| ||||||| |||||||| |||||||||| |||||| ||||| | ||| Sbjct: 349 ctcaactgcctcatctgtctctggtacggcctccccttcgtctcctacggcgtcgtcctc 408 Query: 223 gtcgccaccgtcaacggcaccggagccgcgttccagctcgcctaca 268 ||||||||||||||| || ||| ||| |||||||||||||||| Sbjct: 409 gtcgccaccgtcaactccatcggcgccctcttccagctcgcctaca 454
>dbj|AK066226.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013057K13, full insert sequence Length = 1213 Score = 67.9 bits (34), Expect = 2e-08 Identities = 88/106 (83%) Strand = Plus / Plus Query: 163 ctcaactgcttcatctgcctctggtatggcctcccctgggtctccgacggccggctgctc 222 ||||||||| ||||||| |||||||| |||||||||| |||||| ||||| | ||| Sbjct: 350 ctcaactgcctcatctgtctctggtacggcctccccttcgtctcctacggcgtcgtcctc 409 Query: 223 gtcgccaccgtcaacggcaccggagccgcgttccagctcgcctaca 268 ||||||||||||||| || ||| ||| |||||||||||||||| Sbjct: 410 gtcgccaccgtcaactccatcggcgccctcttccagctcgcctaca 455
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 44.1 bits (22), Expect = 0.27 Identities = 25/26 (96%) Strand = Plus / Minus Query: 30 ctgcttcgccgctggctttgccggca 55 |||||||||||||||| ||||||||| Sbjct: 3407243 ctgcttcgccgctggccttgccggca 3407218
>gb|BC079953.1| Xenopus tropicalis MGC79723 protein, mRNA (cDNA clone MGC:79723 IMAGE:6982013), complete cds Length = 891 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 54 caacctcttcgccttcgctctcttcctgt 82 |||||||||| ||||||||||||||||| Sbjct: 564 caacctcttcttcttcgctctcttcctgt 536
>emb|CT025482.2| Xenopus tropicalis finished cDNA, clone TGas028j07 Length = 825 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 54 caacctcttcgccttcgctctcttcctgt 82 |||||||||| ||||||||||||||||| Sbjct: 529 caacctcttcttcttcgctctcttcctgt 501
>gb|AC048334.21| Homo sapiens 3 BAC RP11-572C15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 215719 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 cttcgccttcgctctcttcct 80 ||||||||||||||||||||| Sbjct: 65499 cttcgccttcgctctcttcct 65479
>ref|NM_001007512.1| Xenopus tropicalis MGC79723 protein (MGC79723), mRNA Length = 891 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 54 caacctcttcgccttcgctctcttcctgt 82 |||||||||| ||||||||||||||||| Sbjct: 564 caacctcttcttcttcgctctcttcctgt 536
>gb|AY909538.1| Siniperca chuatsi clone C352 NAC alpha mRNA, partial cds Length = 102 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 54 caacctcttcgccttcgctctcttcctgt 82 |||||||||| ||||||||||||||||| Sbjct: 29 caacctcttcttcttcgctctcttcctgt 1
>ref|XM_465111.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1377 Score = 40.1 bits (20), Expect = 4.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 73 ctcttcctgtccccagtgccgaccttca 100 |||||||| |||||||||||||| |||| Sbjct: 274 ctcttcctctccccagtgccgacgttca 301
>ref|XM_507468.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0010K08.10 mRNA Length = 1383 Score = 40.1 bits (20), Expect = 4.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 73 ctcttcctgtccccagtgccgaccttca 100 |||||||| |||||||||||||| |||| Sbjct: 274 ctcttcctctccccagtgccgacgttca 301
>ref|XM_507467.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0010K08.10 mRNA Length = 1384 Score = 40.1 bits (20), Expect = 4.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 73 ctcttcctgtccccagtgccgaccttca 100 |||||||| |||||||||||||| |||| Sbjct: 275 ctcttcctctccccagtgccgacgttca 302
>ref|XM_506777.2| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0010K08.10 mRNA Length = 1485 Score = 40.1 bits (20), Expect = 4.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 73 ctcttcctgtccccagtgccgaccttca 100 |||||||| |||||||||||||| |||| Sbjct: 271 ctcttcctctccccagtgccgacgttca 298
>gb|AE013185.1| Thermoanaerobacter tengcongensis MB4, section 212 of 244 of the complete genome Length = 10029 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 tttgtctcttcttcatctac 288 |||||||||||||||||||| Sbjct: 5857 tttgtctcttcttcatctac 5876
>ref|XM_383808.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03632.1) partial mRNA Length = 996 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 cgtcgccaccgtcaacggca 241 |||||||||||||||||||| Sbjct: 66 cgtcgccaccgtcaacggca 85
>gb|AC132148.3| Mus musculus BAC clone RP23-6N21 from chromosome 19, complete sequence Length = 191402 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tcttcctgtccccagtgccg 93 |||||||||||||||||||| Sbjct: 117650 tcttcctgtccccagtgccg 117631
>gb|AC121904.2| Mus musculus BAC clone RP24-175O7 from 7, complete sequence Length = 162770 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 tcccttacctgctctccctgctca 166 |||||| ||||||||||||||||| Sbjct: 2113 tcccttccctgctctccctgctca 2136
>gb|AF398948.1| Phytophthora cinnamomi polygalacturonase (Pg9) gene, complete cds Length = 1807 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 ctcgtcgccaccgtcaacgg 239 |||||||||||||||||||| Sbjct: 211 ctcgtcgccaccgtcaacgg 230
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 219 gctcgtcgccaccgtcaacggcac 242 ||||||||||||| |||||||||| Sbjct: 4267985 gctcgtcgccaccctcaacggcac 4267962
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 cctctccctctacgagatct 28 |||||||||||||||||||| Sbjct: 4461045 cctctccctctacgagatct 4461026
>gb|AC154358.2| Mus musculus BAC clone RP23-173M16 from chromosome 13, complete sequence Length = 193594 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 143 tcccttacctgctctccctgctca 166 |||||| ||||||||||||||||| Sbjct: 76272 tcccttccctgctctccctgctca 76249
>dbj|AK081233.1| Mus musculus adult male corpus striatum cDNA, RIKEN full-length enriched library, clone:C030017G13 product:unclassifiable, full insert sequence Length = 2331 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 ctcaactgcttcatctgcct 182 |||||||||||||||||||| Sbjct: 258 ctcaactgcttcatctgcct 277
>emb|AL772302.20| Mouse DNA sequence from clone RP23-450F9 on chromosome 4, complete sequence Length = 202175 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 cctacatttgtctcttcttc 282 |||||||||||||||||||| Sbjct: 139087 cctacatttgtctcttcttc 139106
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 205 tccgacggccggctgctcgtcgcc 228 ||||||||||||||||||| |||| Sbjct: 1731017 tccgacggccggctgctcgccgcc 1730994
>dbj|AK104467.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C10, full insert sequence Length = 1383 Score = 40.1 bits (20), Expect = 4.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 73 ctcttcctgtccccagtgccgaccttca 100 |||||||| |||||||||||||| |||| Sbjct: 274 ctcttcctctccccagtgccgacgttca 301
>dbj|AK104411.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-G12, full insert sequence Length = 1377 Score = 40.1 bits (20), Expect = 4.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 73 ctcttcctgtccccagtgccgaccttca 100 |||||||| |||||||||||||| |||| Sbjct: 274 ctcttcctctccccagtgccgacgttca 301
>dbj|AK100174.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027A16, full insert sequence Length = 1484 Score = 40.1 bits (20), Expect = 4.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 73 ctcttcctgtccccagtgccgaccttca 100 |||||||| |||||||||||||| |||| Sbjct: 270 ctcttcctctccccagtgccgacgttca 297
>dbj|AK071676.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108F17, full insert sequence Length = 1384 Score = 40.1 bits (20), Expect = 4.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 73 ctcttcctgtccccagtgccgaccttca 100 |||||||| |||||||||||||| |||| Sbjct: 275 ctcttcctctccccagtgccgacgttca 302
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 gacggccggctgctcgtcgc 227 |||||||||||||||||||| Sbjct: 3001952 gacggccggctgctcgtcgc 3001933
>gb|AC147138.3| Mus musculus BAC clone RP24-230H23 from 7, complete sequence Length = 189381 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 143 tcccttacctgctctccctgctca 166 |||||| ||||||||||||||||| Sbjct: 24148 tcccttccctgctctccctgctca 24125
>gb|AC112263.4| Mus musculus BAC clone RP23-403P24 from 5, complete sequence Length = 189091 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 ctcaactgcttcatctgcct 182 |||||||||||||||||||| Sbjct: 156145 ctcaactgcttcatctgcct 156126
>emb|AL672194.1| Mouse DNA sequence from clone RP23-73P3 on chromosome 13, complete sequence Length = 173598 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 143 tcccttacctgctctccctgctca 166 |||||| ||||||||||||||||| Sbjct: 155677 tcccttccctgctctccctgctca 155654 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,939,993 Number of Sequences: 3902068 Number of extensions: 2939993 Number of successful extensions: 138396 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 137931 Number of HSP's gapped (non-prelim): 465 length of query: 319 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 297 effective length of database: 17,147,199,772 effective search space: 5092718332284 effective search space used: 5092718332284 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
